ISPye29
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP020442.2 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 Paracoccus yeei strain TT13 Paracoccus mutanolyticus RSP-02 Select seq CP024422.1 |
DNA section
IS Length : 1449 bp
Ends
IR Length : 16/17
IRL : GGGGCTGTAGAAGAAGTGCCATCCCTCTGATTCACTATGCCTATTGGTGG
IRR : GGGGCTGTTGAAGAAGTCGTTTCATGCTGCTGCTGGGATCTGGGGCGGGG
Comments : Ends based on alignment of multiple copies of ISPye29 and similarity of IRs to IRs from ISMno17
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
gcccggaaaaagctcccccg | ggggggagctttttcagcga | 0 | |
ggtcagcaaacggttcgtat | aaggggactgtttgcccgac | 0 | |
gcgcccggaaaacggtcccc | gagctttttcagcgagaaag | 0 | |
tcgctgaaaaagctccaccg | ggggggatcgttttccgggc | 0 |
DNA sequence
GGGGCTGTAGAAGAAGTGCCATCCCTCTGATTCACTATGCCTATTGGTGGATAAGAGGTTACAATGCTGGGTCGGAAGGAACGCGGGCAGCTGGAGCTTT
TCATCACCGGGTCACTTCGGAGCCTGATCCCTGACGACCATGTGCTGGTGAGGGTTGATCAGGTTCTCGATCTCGAGTGGCTGCGTGCTGAAGTGGGTGC
TCTCTCTTGCGCCGACAACGGCCGCCCTGGCATCGACCCCGAGGTTGCTGTGCGCCTGATGCTGGCCGGCTTTCTTCTCGGGATCGTCCATGACCGGCGC
CTGATGAGGGAAGCGCAAGTCAATCTCGCGATCCGCTGGTTCGTCGGTCACGCCTTGCACGAGGCGCTGCCGGATCACTCCTCGCTGACGCGCATCCGTC
AGCGTTGGGGCGAGGACGTCTTCCGCCGGATCTTCACGCGAGTCGTGCGCCAGTGCCAGCAAGCCGGGATGGTTTCAGCCGAGGCCGTCCACATCGACGC
AAGCCTGATCCGGGCGAATGTCAGTATGGATGCGCCGGTGACGCGCCATCTGGATGCGGTCGAGGCAGCCCACGACACAGCCGAGGCCGACCACACGGCG
CGGGACGCGCGCAGGAGCGGCAGGTTCAAGACGCTCTGCCGCACGGATCCGGACGCCACCATGGCGACATCCTCCAGTGCCCCGCTGCGCCCGGCCTGCA
AGCAGCACACGGCGGTTGATGACCTGGCAGGCGTCGTCGTCGATGTAGAGATCGTGACCGGCGAGGAGCATGACACGGGCCGGATCGACGAGCGCCTCGA
CGCCATCGAAGTGACCCTCGGGGTTACCCCGGGCCGGATCACGGCGGACACGATTTATGGGGTGGGACGGGTCTTCGCCGCCCTTGAGGACCGCCAGATC
GAAGCCGTCATCCCGCCTCTTCGCGCGCCCCGCCGCAAAGGGGCGCAGGGATTGCCCACCGAGCGGTTCAAGTATGATCCTCAAGACAACGTGGCCCGAT
GTCCGGCGAAGAAGCGGCTGACCCCTCGCAACAGCACCAAATCCGGAAAGTGGTATCGTGCGGACCGGCGCGATTGCACACGCTGTCCCCTCAAGGCGCA
ATGCCTGCCCCGGGGCGCCACATCTCGCCGGGTGCATATCGTAACCAAGCATGCGGCCATCCTGCGCGCCCGGCGCAAACGCGCGGCATCGGGTGACGAT
GAACACGCGATCCATACGCGCCACCGTTGGCGGGTCGAAGGCGCGCACGGCACGGCCAAGACGCTCCACGGACTTGCCAGGACCATCCGCAGAGGGCTCG
AAAACATGAAGATCCAGGCCCTCCTGACGGCCGTGGCAATGAACCTCAAGAAGCTGGCGGCAGCCCTGCAGTTCATCAGGTCAATCATTGAAAATCGGAC
CCCGCCCCAGATCCCAGCAGCAGCATGAAACGACTTCTTCAACAGCCCC
TCATCACCGGGTCACTTCGGAGCCTGATCCCTGACGACCATGTGCTGGTGAGGGTTGATCAGGTTCTCGATCTCGAGTGGCTGCGTGCTGAAGTGGGTGC
TCTCTCTTGCGCCGACAACGGCCGCCCTGGCATCGACCCCGAGGTTGCTGTGCGCCTGATGCTGGCCGGCTTTCTTCTCGGGATCGTCCATGACCGGCGC
CTGATGAGGGAAGCGCAAGTCAATCTCGCGATCCGCTGGTTCGTCGGTCACGCCTTGCACGAGGCGCTGCCGGATCACTCCTCGCTGACGCGCATCCGTC
AGCGTTGGGGCGAGGACGTCTTCCGCCGGATCTTCACGCGAGTCGTGCGCCAGTGCCAGCAAGCCGGGATGGTTTCAGCCGAGGCCGTCCACATCGACGC
AAGCCTGATCCGGGCGAATGTCAGTATGGATGCGCCGGTGACGCGCCATCTGGATGCGGTCGAGGCAGCCCACGACACAGCCGAGGCCGACCACACGGCG
CGGGACGCGCGCAGGAGCGGCAGGTTCAAGACGCTCTGCCGCACGGATCCGGACGCCACCATGGCGACATCCTCCAGTGCCCCGCTGCGCCCGGCCTGCA
AGCAGCACACGGCGGTTGATGACCTGGCAGGCGTCGTCGTCGATGTAGAGATCGTGACCGGCGAGGAGCATGACACGGGCCGGATCGACGAGCGCCTCGA
CGCCATCGAAGTGACCCTCGGGGTTACCCCGGGCCGGATCACGGCGGACACGATTTATGGGGTGGGACGGGTCTTCGCCGCCCTTGAGGACCGCCAGATC
GAAGCCGTCATCCCGCCTCTTCGCGCGCCCCGCCGCAAAGGGGCGCAGGGATTGCCCACCGAGCGGTTCAAGTATGATCCTCAAGACAACGTGGCCCGAT
GTCCGGCGAAGAAGCGGCTGACCCCTCGCAACAGCACCAAATCCGGAAAGTGGTATCGTGCGGACCGGCGCGATTGCACACGCTGTCCCCTCAAGGCGCA
ATGCCTGCCCCGGGGCGCCACATCTCGCCGGGTGCATATCGTAACCAAGCATGCGGCCATCCTGCGCGCCCGGCGCAAACGCGCGGCATCGGGTGACGAT
GAACACGCGATCCATACGCGCCACCGTTGGCGGGTCGAAGGCGCGCACGGCACGGCCAAGACGCTCCACGGACTTGCCAGGACCATCCGCAGAGGGCTCG
AAAACATGAAGATCCAGGCCCTCCTGACGGCCGTGGCAATGAACCTCAAGAAGCTGGCGGCAGCCCTGCAGTTCATCAGGTCAATCATTGAAAATCGGAC
CCCGCCCCAGATCCCAGCAGCAGCATGAAACGACTTCTTCAACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1365 bp | 454 aa | 64 | 1428 | + | No |
Chemistry : DDE
ORF sequence :
MLGRKERGQLELFITGSLRSLIPDDHVLVRVDQVLDLEWLRAEVGALSCADNGRPGIDPEVAVRLMLAGFLLGIVHDRRLMREAQVNLAIRWFVGHALHE
ALPDHSSLTRIRQRWGEDVFRRIFTRVVRQCQQAGMVSAEAVHIDASLIRANVSMDAPVTRHLDAVEAAHDTAEADHTARDARRSGRFKTLCRTDPDATM
ATSSSAPLRPACKQHTAVDDLAGVVVDVEIVTGEEHDTGRIDERLDAIEVTLGVTPGRITADTIYGVGRVFAALEDRQIEAVIPPLRAPRRKGAQGLPTE
RFKYDPQDNVARCPAKKRLTPRNSTKSGKWYRADRRDCTRCPLKAQCLPRGATSRRVHIVTKHAAILRARRKRAASGDDEHAIHTRHRWRVEGAHGTAKT
LHGLARTIRRGLENMKIQALLTAVAMNLKKLAAALQFIRSIIENRTPPQIPAAA
ALPDHSSLTRIRQRWGEDVFRRIFTRVVRQCQQAGMVSAEAVHIDASLIRANVSMDAPVTRHLDAVEAAHDTAEADHTARDARRSGRFKTLCRTDPDATM
ATSSSAPLRPACKQHTAVDDLAGVVVDVEIVTGEEHDTGRIDERLDAIEVTLGVTPGRITADTIYGVGRVFAALEDRQIEAVIPPLRAPRRKGAQGLPTE
RFKYDPQDNVARCPAKKRLTPRNSTKSGKWYRADRRDCTRCPLKAQCLPRGATSRRVHIVTKHAAILRARRKRAASGDDEHAIHTRHRWRVEGAHGTAKT
LHGLARTIRRGLENMKIQALLTAVAMNLKKLAAALQFIRSIIENRTPPQIPAAA
Blast result :
Comments
ISPye29 is 70% aa similar to ISMno17.
ISPye29 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strains FDAARGOS_252 and TT13.
ISPye29 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strains FDAARGOS_252 and TT13.
References