ISPye29

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP020442.2 ND Paracoccus yeei
Paracoccus yeei
Paracoccus yeei FDAARGOS_252
Paracoccus yeei strain TT13
Paracoccus mutanolyticus RSP-02
Select seq CP024422.1
DNA section
IS Length : 1449 bp

Ends


IR Length : 16/17

IRL : GGGGCTGTAGAAGAAGTGCCATCCCTCTGATTCACTATGCCTATTGGTGG
IRR : GGGGCTGTTGAAGAAGTCGTTTCATGCTGCTGCTGGGATCTGGGGCGGGG

Comments : Ends based on alignment of multiple copies of ISPye29 and similarity of IRs to IRs from ISMno17

Insertion site


Left flankDirect repeatRight flankDR Length
gcccggaaaaagctcccccgggggggagctttttcagcga0
ggtcagcaaacggttcgtataaggggactgtttgcccgac0
gcgcccggaaaacggtccccgagctttttcagcgagaaag0
tcgctgaaaaagctccaccgggggggatcgttttccgggc0

DNA sequence

GGGGCTGTAGAAGAAGTGCCATCCCTCTGATTCACTATGCCTATTGGTGGATAAGAGGTTACAATGCTGGGTCGGAAGGAACGCGGGCAGCTGGAGCTTT
TCATCACCGGGTCACTTCGGAGCCTGATCCCTGACGACCATGTGCTGGTGAGGGTTGATCAGGTTCTCGATCTCGAGTGGCTGCGTGCTGAAGTGGGTGC
TCTCTCTTGCGCCGACAACGGCCGCCCTGGCATCGACCCCGAGGTTGCTGTGCGCCTGATGCTGGCCGGCTTTCTTCTCGGGATCGTCCATGACCGGCGC
CTGATGAGGGAAGCGCAAGTCAATCTCGCGATCCGCTGGTTCGTCGGTCACGCCTTGCACGAGGCGCTGCCGGATCACTCCTCGCTGACGCGCATCCGTC
AGCGTTGGGGCGAGGACGTCTTCCGCCGGATCTTCACGCGAGTCGTGCGCCAGTGCCAGCAAGCCGGGATGGTTTCAGCCGAGGCCGTCCACATCGACGC
AAGCCTGATCCGGGCGAATGTCAGTATGGATGCGCCGGTGACGCGCCATCTGGATGCGGTCGAGGCAGCCCACGACACAGCCGAGGCCGACCACACGGCG
CGGGACGCGCGCAGGAGCGGCAGGTTCAAGACGCTCTGCCGCACGGATCCGGACGCCACCATGGCGACATCCTCCAGTGCCCCGCTGCGCCCGGCCTGCA
AGCAGCACACGGCGGTTGATGACCTGGCAGGCGTCGTCGTCGATGTAGAGATCGTGACCGGCGAGGAGCATGACACGGGCCGGATCGACGAGCGCCTCGA
CGCCATCGAAGTGACCCTCGGGGTTACCCCGGGCCGGATCACGGCGGACACGATTTATGGGGTGGGACGGGTCTTCGCCGCCCTTGAGGACCGCCAGATC
GAAGCCGTCATCCCGCCTCTTCGCGCGCCCCGCCGCAAAGGGGCGCAGGGATTGCCCACCGAGCGGTTCAAGTATGATCCTCAAGACAACGTGGCCCGAT
GTCCGGCGAAGAAGCGGCTGACCCCTCGCAACAGCACCAAATCCGGAAAGTGGTATCGTGCGGACCGGCGCGATTGCACACGCTGTCCCCTCAAGGCGCA
ATGCCTGCCCCGGGGCGCCACATCTCGCCGGGTGCATATCGTAACCAAGCATGCGGCCATCCTGCGCGCCCGGCGCAAACGCGCGGCATCGGGTGACGAT
GAACACGCGATCCATACGCGCCACCGTTGGCGGGTCGAAGGCGCGCACGGCACGGCCAAGACGCTCCACGGACTTGCCAGGACCATCCGCAGAGGGCTCG
AAAACATGAAGATCCAGGCCCTCCTGACGGCCGTGGCAATGAACCTCAAGAAGCTGGCGGCAGCCCTGCAGTTCATCAGGTCAATCATTGAAAATCGGAC
CCCGCCCCAGATCCCAGCAGCAGCATGAAACGACTTCTTCAACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1365 bp454 aa641428+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLGRKERGQLELFITGSLRSLIPDDHVLVRVDQVLDLEWLRAEVGALSCADNGRPGIDPEVAVRLMLAGFLLGIVHDRRLMREAQVNLAIRWFVGHALHE
ALPDHSSLTRIRQRWGEDVFRRIFTRVVRQCQQAGMVSAEAVHIDASLIRANVSMDAPVTRHLDAVEAAHDTAEADHTARDARRSGRFKTLCRTDPDATM
ATSSSAPLRPACKQHTAVDDLAGVVVDVEIVTGEEHDTGRIDERLDAIEVTLGVTPGRITADTIYGVGRVFAALEDRQIEAVIPPLRAPRRKGAQGLPTE
RFKYDPQDNVARCPAKKRLTPRNSTKSGKWYRADRRDCTRCPLKAQCLPRGATSRRVHIVTKHAAILRARRKRAASGDDEHAIHTRHRWRVEGAHGTAKT
LHGLARTIRRGLENMKIQALLTAVAMNLKKLAAALQFIRSIIENRTPPQIPAAA

 

Blast result :
Comments
ISPye29 is 70% aa similar to ISMno17.
ISPye29 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strains FDAARGOS_252 and TT13.
References