ISTeha6

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LC516473 ND Tetragenococcus halophilus
Tetragenococcus halophilus NBRC 12172
Tetragenococcus halophilus YA5
DNA section
IS Length : 1675 bp

Ends


IR Length : 17

IRL : CCTGAATGATTTATAAATTTTTCCCAGGATCATTCAATCCTTGGCATGTG
IRR : CCTGAATGATTTATAAAAATTTGTGGATAACGCATTCGACTGTTCAACGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTGTTTTGCCTATGAAAAATAAACTATTCTTTAAAAGTAAATG0
TTTTACGAAAAACACTTTATAATTGCAAAAAACAC5

DNA sequence

CCTGAATGATTTATAAATTTTTCCCAGGATCATTCAATCCTTGGCATGTGCTTTTTTCTAAAGGTTGAGTTGCTTCACCTTCTGGGTGTACAAAAAGAAC
GCACTTCGTGTTATTGTAAAGTCAACGAAACATAACAATAAGGAGTGCGTTCTTATGTCTTTCACTTTACAACAAAATTCTCTTACATTCAATAAGCAAA
AAGCCATCTTGATCGCCAATGACGGTGGCACCTTAACCAATGACGCGGGGCTCGTCTTACTTTCGGAGTTTCTAAATCAAATTCGTTTTGATTCCCTGTT
AGCGCAATACGTTCATATTCCAGAGTATCGTGCCTTCGCCCAACATGAATGGCTGGATGTCGTAAAACAATGGCTATATCAATTGATCGCTGGTTATTCT
CGAGACCGAGACGCCAACACCTTACAATATGATCGCCTTTTTAAGGAAGCATTGAAACAAGAACGCCTTAGTTCGCAATTTATGATGTCTACTTTGCTTC
ATACCTTGACAGAAGAAAATGTTAATCAACTATTACAAGTGGCGAAAAAACTTGGCGATTTAGGCATGGACCAGCAAAACAGCCAACAACTCGTGCTTGA
TCTGGATTCCACCTGTTGTCCCACTTACGGAAAGCAAGAAGCAGGGGAATATATTTACCACTATGGCCTCAATGGGTATCATTCATTTGTGGCATTTGAA
GGTTTAACCGGATTGGCATTAGATGTTCGCCATCGTCATGGCAAATCTTATACCTCCACCCACGCCGAAGATTATCTCGTAGAAATGTTGGCGCATTACC
AACAACGTTCGAGTGATCCCACAATGCTTGTACGCGGGGATAGTGGCTTTGCCAAACCGGAAATTTATAAACAATGTGAGTGTCGAGGCGCCCATTATGT
GATTAAATTGAAAAATAACGTACGGTTGATTCATTATGCGCAACATCTTGTCCAATATACCAACGGTACGGACTACACAAAGTCCGAACATCAATATTTT
AAGATGGCTTATCAAGCAGATTCTTGGGACCGATCTCGAACAGTAGCCATCAAGGCTACTCGAAAAGCCGAAACTTTACTTTTTTCCGAATTTCAATTTG
TGGTGACCGATTTCGCTCATCTTTCGCCCCAAACCATTTTTCAGCTCTATCAAAAACGAGGGAATATGGAAAACTTCATTAAAGAAATGAAGACCGGATT
TTTCGCTGATAAAACGGACAGTCCTTCCTTTTTAGCGAATAAGGTTCGCTTAGCCCTAAGTTTTATCGCCTATAATATCATCCACTTGATGAAACAGCTG
ACTTTTCCGCAAGAGAAAAAGACGACGGTGATTGACACGATCCGTTTTCAACTATTTCATATTGCTGGAAAAGTCACAGAACACGCGCGTCAAGTGCAAA
TTCACTTATCAAGTACGAATGTTTACAACACGCTTTTTTGGGAAGTCCTTACACGAATTCAGCGATTGAATCTCTAGTTTACTTTTCCCCTTTTCCTCTT
GATAAAAAAGGCTTGGCTTTCATTCTCTAGGAAGAATTTTATCTTTTTTTAGCGTCGTTCGATCATCCCTTTCTATTCTTTATTCAAAAGCGGCGATAAA
AAGGGAAAATAACATAAAAGTCACCTCGTTGAACAGTCGAATGCGTTATCCACAAATTTTTATAAATCATTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1323 bp440 aa1551477+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSFTLQQNSLTFNKQKAILIANDGGTLTNDAGLVLLSEFLNQIRFDSLLAQYVHIPEYRAFAQHEWLDVVKQWLYQLIAGYSRDRDANTLQYDRLFKEAL
KQERLSSQFMMSTLLHTLTEENVNQLLQVAKKLGDLGMDQQNSQQLVLDLDSTCCPTYGKQEAGEYIYHYGLNGYHSFVAFEGLTGLALDVRHRHGKSYT
STHAEDYLVEMLAHYQQRSSDPTMLVRGDSGFAKPEIYKQCECRGAHYVIKLKNNVRLIHYAQHLVQYTNGTDYTKSEHQYFKMAYQADSWDRSRTVAIK
ATRKAETLLFSEFQFVVTDFAHLSPQTIFQLYQKRGNMENFIKEMKTGFFADKTDSPSFLANKVRLALSFIAYNIIHLMKQLTFPQEKKTTVIDTIRFQL
FHIAGKVTEHARQVQIHLSSTNVYNTLFWEVLTRIQRLNL

 

Blast result :
Comments
ISTeha6 is 63% aa similar to IS1678.
References
1] Shirakawa,D. and Watanabe,J. (2019) Direct submission.
2] Shirakawa, D., Wakinaka, T., & Watanabe, J. (2020). Bioscience, Biotechnology, and Biochemistry, 84(8), 1724-1735.