ISTeha6
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LC516473 | ND | Tetragenococcus halophilus | Tetragenococcus halophilus NBRC 12172 Tetragenococcus halophilus YA5 |
DNA section
IS Length : 1675 bp
Ends
IR Length : 17
IRL : CCTGAATGATTTATAAATTTTTCCCAGGATCATTCAATCCTTGGCATGTG
IRR : CCTGAATGATTTATAAAAATTTGTGGATAACGCATTCGACTGTTCAACGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTGTTTTGCCTATGAAAAA | TAAACTATTCTTTAAAAGTAAATG | 0 | |
TTTTACGAAAAACAC | TTTAT | AATTGCAAAAAACAC | 5 |
DNA sequence
CCTGAATGATTTATAAATTTTTCCCAGGATCATTCAATCCTTGGCATGTGCTTTTTTCTAAAGGTTGAGTTGCTTCACCTTCTGGGTGTACAAAAAGAAC
GCACTTCGTGTTATTGTAAAGTCAACGAAACATAACAATAAGGAGTGCGTTCTTATGTCTTTCACTTTACAACAAAATTCTCTTACATTCAATAAGCAAA
AAGCCATCTTGATCGCCAATGACGGTGGCACCTTAACCAATGACGCGGGGCTCGTCTTACTTTCGGAGTTTCTAAATCAAATTCGTTTTGATTCCCTGTT
AGCGCAATACGTTCATATTCCAGAGTATCGTGCCTTCGCCCAACATGAATGGCTGGATGTCGTAAAACAATGGCTATATCAATTGATCGCTGGTTATTCT
CGAGACCGAGACGCCAACACCTTACAATATGATCGCCTTTTTAAGGAAGCATTGAAACAAGAACGCCTTAGTTCGCAATTTATGATGTCTACTTTGCTTC
ATACCTTGACAGAAGAAAATGTTAATCAACTATTACAAGTGGCGAAAAAACTTGGCGATTTAGGCATGGACCAGCAAAACAGCCAACAACTCGTGCTTGA
TCTGGATTCCACCTGTTGTCCCACTTACGGAAAGCAAGAAGCAGGGGAATATATTTACCACTATGGCCTCAATGGGTATCATTCATTTGTGGCATTTGAA
GGTTTAACCGGATTGGCATTAGATGTTCGCCATCGTCATGGCAAATCTTATACCTCCACCCACGCCGAAGATTATCTCGTAGAAATGTTGGCGCATTACC
AACAACGTTCGAGTGATCCCACAATGCTTGTACGCGGGGATAGTGGCTTTGCCAAACCGGAAATTTATAAACAATGTGAGTGTCGAGGCGCCCATTATGT
GATTAAATTGAAAAATAACGTACGGTTGATTCATTATGCGCAACATCTTGTCCAATATACCAACGGTACGGACTACACAAAGTCCGAACATCAATATTTT
AAGATGGCTTATCAAGCAGATTCTTGGGACCGATCTCGAACAGTAGCCATCAAGGCTACTCGAAAAGCCGAAACTTTACTTTTTTCCGAATTTCAATTTG
TGGTGACCGATTTCGCTCATCTTTCGCCCCAAACCATTTTTCAGCTCTATCAAAAACGAGGGAATATGGAAAACTTCATTAAAGAAATGAAGACCGGATT
TTTCGCTGATAAAACGGACAGTCCTTCCTTTTTAGCGAATAAGGTTCGCTTAGCCCTAAGTTTTATCGCCTATAATATCATCCACTTGATGAAACAGCTG
ACTTTTCCGCAAGAGAAAAAGACGACGGTGATTGACACGATCCGTTTTCAACTATTTCATATTGCTGGAAAAGTCACAGAACACGCGCGTCAAGTGCAAA
TTCACTTATCAAGTACGAATGTTTACAACACGCTTTTTTGGGAAGTCCTTACACGAATTCAGCGATTGAATCTCTAGTTTACTTTTCCCCTTTTCCTCTT
GATAAAAAAGGCTTGGCTTTCATTCTCTAGGAAGAATTTTATCTTTTTTTAGCGTCGTTCGATCATCCCTTTCTATTCTTTATTCAAAAGCGGCGATAAA
AAGGGAAAATAACATAAAAGTCACCTCGTTGAACAGTCGAATGCGTTATCCACAAATTTTTATAAATCATTCAGG
GCACTTCGTGTTATTGTAAAGTCAACGAAACATAACAATAAGGAGTGCGTTCTTATGTCTTTCACTTTACAACAAAATTCTCTTACATTCAATAAGCAAA
AAGCCATCTTGATCGCCAATGACGGTGGCACCTTAACCAATGACGCGGGGCTCGTCTTACTTTCGGAGTTTCTAAATCAAATTCGTTTTGATTCCCTGTT
AGCGCAATACGTTCATATTCCAGAGTATCGTGCCTTCGCCCAACATGAATGGCTGGATGTCGTAAAACAATGGCTATATCAATTGATCGCTGGTTATTCT
CGAGACCGAGACGCCAACACCTTACAATATGATCGCCTTTTTAAGGAAGCATTGAAACAAGAACGCCTTAGTTCGCAATTTATGATGTCTACTTTGCTTC
ATACCTTGACAGAAGAAAATGTTAATCAACTATTACAAGTGGCGAAAAAACTTGGCGATTTAGGCATGGACCAGCAAAACAGCCAACAACTCGTGCTTGA
TCTGGATTCCACCTGTTGTCCCACTTACGGAAAGCAAGAAGCAGGGGAATATATTTACCACTATGGCCTCAATGGGTATCATTCATTTGTGGCATTTGAA
GGTTTAACCGGATTGGCATTAGATGTTCGCCATCGTCATGGCAAATCTTATACCTCCACCCACGCCGAAGATTATCTCGTAGAAATGTTGGCGCATTACC
AACAACGTTCGAGTGATCCCACAATGCTTGTACGCGGGGATAGTGGCTTTGCCAAACCGGAAATTTATAAACAATGTGAGTGTCGAGGCGCCCATTATGT
GATTAAATTGAAAAATAACGTACGGTTGATTCATTATGCGCAACATCTTGTCCAATATACCAACGGTACGGACTACACAAAGTCCGAACATCAATATTTT
AAGATGGCTTATCAAGCAGATTCTTGGGACCGATCTCGAACAGTAGCCATCAAGGCTACTCGAAAAGCCGAAACTTTACTTTTTTCCGAATTTCAATTTG
TGGTGACCGATTTCGCTCATCTTTCGCCCCAAACCATTTTTCAGCTCTATCAAAAACGAGGGAATATGGAAAACTTCATTAAAGAAATGAAGACCGGATT
TTTCGCTGATAAAACGGACAGTCCTTCCTTTTTAGCGAATAAGGTTCGCTTAGCCCTAAGTTTTATCGCCTATAATATCATCCACTTGATGAAACAGCTG
ACTTTTCCGCAAGAGAAAAAGACGACGGTGATTGACACGATCCGTTTTCAACTATTTCATATTGCTGGAAAAGTCACAGAACACGCGCGTCAAGTGCAAA
TTCACTTATCAAGTACGAATGTTTACAACACGCTTTTTTGGGAAGTCCTTACACGAATTCAGCGATTGAATCTCTAGTTTACTTTTCCCCTTTTCCTCTT
GATAAAAAAGGCTTGGCTTTCATTCTCTAGGAAGAATTTTATCTTTTTTTAGCGTCGTTCGATCATCCCTTTCTATTCTTTATTCAAAAGCGGCGATAAA
AAGGGAAAATAACATAAAAGTCACCTCGTTGAACAGTCGAATGCGTTATCCACAAATTTTTATAAATCATTCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1323 bp | 440 aa | 155 | 1477 | + | No |
Chemistry : DDE
ORF sequence :
MSFTLQQNSLTFNKQKAILIANDGGTLTNDAGLVLLSEFLNQIRFDSLLAQYVHIPEYRAFAQHEWLDVVKQWLYQLIAGYSRDRDANTLQYDRLFKEAL
KQERLSSQFMMSTLLHTLTEENVNQLLQVAKKLGDLGMDQQNSQQLVLDLDSTCCPTYGKQEAGEYIYHYGLNGYHSFVAFEGLTGLALDVRHRHGKSYT
STHAEDYLVEMLAHYQQRSSDPTMLVRGDSGFAKPEIYKQCECRGAHYVIKLKNNVRLIHYAQHLVQYTNGTDYTKSEHQYFKMAYQADSWDRSRTVAIK
ATRKAETLLFSEFQFVVTDFAHLSPQTIFQLYQKRGNMENFIKEMKTGFFADKTDSPSFLANKVRLALSFIAYNIIHLMKQLTFPQEKKTTVIDTIRFQL
FHIAGKVTEHARQVQIHLSSTNVYNTLFWEVLTRIQRLNL
KQERLSSQFMMSTLLHTLTEENVNQLLQVAKKLGDLGMDQQNSQQLVLDLDSTCCPTYGKQEAGEYIYHYGLNGYHSFVAFEGLTGLALDVRHRHGKSYT
STHAEDYLVEMLAHYQQRSSDPTMLVRGDSGFAKPEIYKQCECRGAHYVIKLKNNVRLIHYAQHLVQYTNGTDYTKSEHQYFKMAYQADSWDRSRTVAIK
ATRKAETLLFSEFQFVVTDFAHLSPQTIFQLYQKRGNMENFIKEMKTGFFADKTDSPSFLANKVRLALSFIAYNIIHLMKQLTFPQEKKTTVIDTIRFQL
FHIAGKVTEHARQVQIHLSSTNVYNTLFWEVLTRIQRLNL
Blast result :
Comments
ISTeha6 is 63% aa similar to IS1678.
References
1] Shirakawa,D. and Watanabe,J. (2019) Direct submission.
2] Shirakawa, D., Wakinaka, T., & Watanabe, J. (2020). Bioscience, Biotechnology, and Biochemistry, 84(8), 1724-1735.
2] Shirakawa, D., Wakinaka, T., & Watanabe, J. (2020). Bioscience, Biotechnology, and Biochemistry, 84(8), 1724-1735.