ISAba53

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP027704 ND Acinetobacter baumannii
Acinetobacter baumannii DS002
DNA section
IS Length : 1039 bp

Ends


IR Length : 16/18

IRL : GGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTT
IRR : GGCTTTGTTGCATAAAGCCTTTGAAGGTAAAGTTTTCCTAAGTTGCTAAA

Insertion site


Left flankDirect repeatRight flankDR Length
CGATTGCATTACATTTTAATGTAGTTAGTTACAAAAGAAA0

DNA sequence

GGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTGAGATGAATAAGCCTACACCTAAAATCTACCGTACAACCAATTGGCCCA
CATACAACCGAGCTCTCATTAATCGTGGGAATATTGCCATTTGGTTTGATCCCAAAACACAATGGTATGCTCAACCAAAAAGCCAACATGGTCGAAATCA
AACTTATTCCGATACAGCCATCCAATGCTGCTTAATGATTAAATCCATATTTCGTCTTTCTCTACGCATGGTCACTGGCTTTGTACAAAGCCTGATTAAA
CTTTGCGGATTAGATTGGACAGCGCCAGACTATACGACGCTTTGCAGAAGACAAAAACATATTGATATTGCGATTAGCTACCAAAAAAGTAGCAATGGTC
TACATCTACTCGTAGATTCAACTGGTTTAAAGTTTTTGGGCGAAGGTGAATGGAAACGGAAGAAACATCAGCCTGAATATCGTCGACAATGGCGTAAGCT
TCACATTGGTATAGATGCTGAAACGCTGCAAATACGTGCAGTTCAGCTCACAACGAATAATATCAGTGATTCACAGGTGCTCGGTGATTTACTTGGTCAA
ATACCACTTGATGAGCGAGTAGATTCTGTCTATACCGATGGAGCCTATGACACTAAATGCTGCAGACGAGTGATCTCAGATCGTCAAGCATATGCGGTGA
TTCCGCCAAGAAAAAATGCGAAACCGTGGAAAGATACAAAAGTTCATTCGCAAGAGAGAAATGAATTACTAAAAACAGTTAAGCGTCTAGGAAGAGCCCT
TTGGAAAAAGTGGTCTGGTTATCATCGGCGAAGTTTGGTCGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAACTCTACTCAAGGAATTTTGAC
AGCCAAGTGAATGAGATCCATGCACGTGTAGCCGTATTAAATAAATTTACAGAATTAGGCAGACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTT
AGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa55987+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNKPTPKIYRTTNWPTYNRALINRGNIAIWFDPKTQWYAQPKSQHGRNQTYSDTAIQCCLMIKSIFRLSLRMVTGFVQSLIKLCGLDWTAPDYTTLCRRQ
KHIDIAISYQKSSNGLHLLVDSTGLKFLGEGEWKRKKHQPEYRRQWRKLHIGIDAETLQIRAVQLTTNNISDSQVLGDLLGQIPLDERVDSVYTDGAYDT
KCCRRVISDRQAYAVIPPRKNAKPWKDTKVHSQERNELLKTVKRLGRALWKKWSGYHRRSLVETKMHCIKLLGDKLYSRNFDSQVNEIHARVAVLNKFTE
LGRPHTQVVT

 

Blast result :
Comments
ISAba53 is 95% aa similar to ISAha3.
References
1] Hamidian M. Direct submission
2] Yakkala,H., Samantarrai,D. and Siddavattam,D. (2018) Direct GenBank submission.