ISPsko2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas koreensis
Pseudomonas koreensis strain P19E3
DNA section
IS Length : 1596 bp

Ends


IR Length : 15/19

IRL : CAGACTGTGTGAAAACCTAGCAGTCTGAGAGCAAGCTGAAGACAATGCCT
IRR : CAGAGCGTGTGAAAACGCACTGACGCCAGAAAAATCCAACGCCCCGACTG

Insertion site


Left flankDirect repeatRight flankDR Length
ACAAAAAAGCCCGGCTCACTGCCGGGCTTTTTCCA5

DNA sequence

CAGACTGTGTGAAAACCTAGCAGTCTGAGAGCAAGCTGAAGACAATGCCTCCATCAGTCGATGGGGGCATTGTCGTTTATGGGCTACATCCAGGGCGAAG
GTCGTCAGCAAAGCAGCCTATTTCCTCCCACATTGGAGGAGCTGGTGCCGGAGGATCACCTGGTACGGGTGATCGAGGCCTATGTCGCCCGCCTGGATCT
GCAGGCTCTGGGTTTCAGCAAGGCTGAACCACTCAAGACTGGACGTCCTGGCTATGATCCAGCGGATCTACTCAAGCTTTATCTGTACGGTTACTTCCAG
CGCATCCGCTCCTCCCGGCGCCTGGAAGCCGAGTGCCAACGCAATGTCGAGGTGATGTGGCTGCTGGGCCGATTGGCACCGGACTTCAAGACCATTGCTG
ATTTTCGCAAGGACAACAGCGCTGCTTTTCAGGCGACCTGCCGCACCTTCGTCCAGTTCTGTCGCCAGGTGGGGCTGATCAGCGGGCAACTCGTGGCCAT
CGATGGCAGCAAGTTTCAGGCGGTAGCGTCGCAACGCAAGCATCTGAGTCTGACGAAGCTCAAGCGTCAACAAGGCAAGCTGGAGGCGCAGATCGCCCGT
TATCTGGCCGAACTGGACGAGGCTGACCGCAGTGAGGCCGCTGAAGTGGTTGATCGCAGTGCGGTCAAGGCTGCGCTGCAGCAGCTGGAGAGCCGACATG
CCGATAACCTGACAGCCCAGGCGTTGATGGAGGTACAGGGGGTGGAGCAGTTCGTCGTGGGTGAGAGCGAGGCGCGCATGATGCGTACCCACCAGGGGGC
TCGCGTGGCTTATAACGTGCAAAGCGCGGTAGATGGCGAGCATGGGCTGATCCTGCATCATGCCGTCACTCAGGACGGCAGTGATAACCAGCAACTGGAA
CCGATGGCCAAGGCCGCCCAGGCGATCCTAGAACAGGAAGAGCTGACGGTTACAGCCGATGCGGGCTACTCCAATGGTGAGCAGTTTCAAGCGTGTGATG
ATGCTGGGATTACGGCCTATGTGCCGGAGAATCGAGGCATAAATAACAAGGGCGGCGACACGCCGCTATTCGATCGCAGCGCCTTCAGCTACGACGTAGA
AAACGACCAGTACCAATGCCCTGCAAGCCAATGGTTACCGCTCAAGCAGGTAAACGGCCTACAGCGCATTTATGCTGTACGCGGCGACTGCACGGCTTGT
CCATTGAAATCACGCTGCACCAAGGCTAAACGTCGACACGTGACTCGGCATGTCCATGAGGCCGCATTCGAGCGCATGCATCAGCGGATGCAGGTGCATC
CAGAGATGATGGTCAGGCGCAGCTCCATCGTCGAACATCCCTTCGGCAACCTGAAGCAATGGATTTTGGGTAATGGTCGCTTCCTGCTCCGACAACTGCA
GGGCGCTCGGACGGAAATGGCCCTGGCGGTCAACGCCTACAACCTGAAGCGTGCCATCAATGTGATGGGTGCCCGTCGGTTGATCGAGCTGTTGGGGTAA
ATCCCGCTTTCCATTTCCAAGCATCAAAAACACCAACGCCCCGAACCAGTCGGGGCGTTGGATTTTTCTGGCGTCAGTGCGTTTTCACACGCTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1422 bp473 aa791500+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGYIQGEGRQQSSLFPPTLEELVPEDHLVRVIEAYVARLDLQALGFSKAEPLKTGRPGYDPADLLKLYLYGYFQRIRSSRRLEAECQRNVEVMWLLGRLA
PDFKTIADFRKDNSAAFQATCRTFVQFCRQVGLISGQLVAIDGSKFQAVASQRKHLSLTKLKRQQGKLEAQIARYLAELDEADRSEAAEVVDRSAVKAAL
QQLESRHADNLTAQALMEVQGVEQFVVGESEARMMRTHQGARVAYNVQSAVDGEHGLILHHAVTQDGSDNQQLEPMAKAAQAILEQEELTVTADAGYSNG
EQFQACDDAGITAYVPENRGINNKGGDTPLFDRSAFSYDVENDQYQCPASQWLPLKQVNGLQRIYAVRGDCTACPLKSRCTKAKRRHVTRHVHEAAFERM
HQRMQVHPEMMVRRSSIVEHPFGNLKQWILGNGRFLLRQLQGARTEMALAVNAYNLKRAINVMGARRLIELLG

 

Blast result :
Comments
ISPsko2 is 83% aa similar to ISPpu20.
References
1] Xiaoyuan Jiang (2019) Direct submission.