ISPsko2
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas koreensis | Pseudomonas koreensis strain P19E3 |
DNA section
IS Length : 1596 bp
Ends
IR Length : 15/19
IRL : CAGACTGTGTGAAAACCTAGCAGTCTGAGAGCAAGCTGAAGACAATGCCT
IRR : CAGAGCGTGTGAAAACGCACTGACGCCAGAAAAATCCAACGCCCCGACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAAAAAAGCCCGGC | TCACT | GCCGGGCTTTTTCCA | 5 |
DNA sequence
CAGACTGTGTGAAAACCTAGCAGTCTGAGAGCAAGCTGAAGACAATGCCTCCATCAGTCGATGGGGGCATTGTCGTTTATGGGCTACATCCAGGGCGAAG
GTCGTCAGCAAAGCAGCCTATTTCCTCCCACATTGGAGGAGCTGGTGCCGGAGGATCACCTGGTACGGGTGATCGAGGCCTATGTCGCCCGCCTGGATCT
GCAGGCTCTGGGTTTCAGCAAGGCTGAACCACTCAAGACTGGACGTCCTGGCTATGATCCAGCGGATCTACTCAAGCTTTATCTGTACGGTTACTTCCAG
CGCATCCGCTCCTCCCGGCGCCTGGAAGCCGAGTGCCAACGCAATGTCGAGGTGATGTGGCTGCTGGGCCGATTGGCACCGGACTTCAAGACCATTGCTG
ATTTTCGCAAGGACAACAGCGCTGCTTTTCAGGCGACCTGCCGCACCTTCGTCCAGTTCTGTCGCCAGGTGGGGCTGATCAGCGGGCAACTCGTGGCCAT
CGATGGCAGCAAGTTTCAGGCGGTAGCGTCGCAACGCAAGCATCTGAGTCTGACGAAGCTCAAGCGTCAACAAGGCAAGCTGGAGGCGCAGATCGCCCGT
TATCTGGCCGAACTGGACGAGGCTGACCGCAGTGAGGCCGCTGAAGTGGTTGATCGCAGTGCGGTCAAGGCTGCGCTGCAGCAGCTGGAGAGCCGACATG
CCGATAACCTGACAGCCCAGGCGTTGATGGAGGTACAGGGGGTGGAGCAGTTCGTCGTGGGTGAGAGCGAGGCGCGCATGATGCGTACCCACCAGGGGGC
TCGCGTGGCTTATAACGTGCAAAGCGCGGTAGATGGCGAGCATGGGCTGATCCTGCATCATGCCGTCACTCAGGACGGCAGTGATAACCAGCAACTGGAA
CCGATGGCCAAGGCCGCCCAGGCGATCCTAGAACAGGAAGAGCTGACGGTTACAGCCGATGCGGGCTACTCCAATGGTGAGCAGTTTCAAGCGTGTGATG
ATGCTGGGATTACGGCCTATGTGCCGGAGAATCGAGGCATAAATAACAAGGGCGGCGACACGCCGCTATTCGATCGCAGCGCCTTCAGCTACGACGTAGA
AAACGACCAGTACCAATGCCCTGCAAGCCAATGGTTACCGCTCAAGCAGGTAAACGGCCTACAGCGCATTTATGCTGTACGCGGCGACTGCACGGCTTGT
CCATTGAAATCACGCTGCACCAAGGCTAAACGTCGACACGTGACTCGGCATGTCCATGAGGCCGCATTCGAGCGCATGCATCAGCGGATGCAGGTGCATC
CAGAGATGATGGTCAGGCGCAGCTCCATCGTCGAACATCCCTTCGGCAACCTGAAGCAATGGATTTTGGGTAATGGTCGCTTCCTGCTCCGACAACTGCA
GGGCGCTCGGACGGAAATGGCCCTGGCGGTCAACGCCTACAACCTGAAGCGTGCCATCAATGTGATGGGTGCCCGTCGGTTGATCGAGCTGTTGGGGTAA
ATCCCGCTTTCCATTTCCAAGCATCAAAAACACCAACGCCCCGAACCAGTCGGGGCGTTGGATTTTTCTGGCGTCAGTGCGTTTTCACACGCTCTG
GTCGTCAGCAAAGCAGCCTATTTCCTCCCACATTGGAGGAGCTGGTGCCGGAGGATCACCTGGTACGGGTGATCGAGGCCTATGTCGCCCGCCTGGATCT
GCAGGCTCTGGGTTTCAGCAAGGCTGAACCACTCAAGACTGGACGTCCTGGCTATGATCCAGCGGATCTACTCAAGCTTTATCTGTACGGTTACTTCCAG
CGCATCCGCTCCTCCCGGCGCCTGGAAGCCGAGTGCCAACGCAATGTCGAGGTGATGTGGCTGCTGGGCCGATTGGCACCGGACTTCAAGACCATTGCTG
ATTTTCGCAAGGACAACAGCGCTGCTTTTCAGGCGACCTGCCGCACCTTCGTCCAGTTCTGTCGCCAGGTGGGGCTGATCAGCGGGCAACTCGTGGCCAT
CGATGGCAGCAAGTTTCAGGCGGTAGCGTCGCAACGCAAGCATCTGAGTCTGACGAAGCTCAAGCGTCAACAAGGCAAGCTGGAGGCGCAGATCGCCCGT
TATCTGGCCGAACTGGACGAGGCTGACCGCAGTGAGGCCGCTGAAGTGGTTGATCGCAGTGCGGTCAAGGCTGCGCTGCAGCAGCTGGAGAGCCGACATG
CCGATAACCTGACAGCCCAGGCGTTGATGGAGGTACAGGGGGTGGAGCAGTTCGTCGTGGGTGAGAGCGAGGCGCGCATGATGCGTACCCACCAGGGGGC
TCGCGTGGCTTATAACGTGCAAAGCGCGGTAGATGGCGAGCATGGGCTGATCCTGCATCATGCCGTCACTCAGGACGGCAGTGATAACCAGCAACTGGAA
CCGATGGCCAAGGCCGCCCAGGCGATCCTAGAACAGGAAGAGCTGACGGTTACAGCCGATGCGGGCTACTCCAATGGTGAGCAGTTTCAAGCGTGTGATG
ATGCTGGGATTACGGCCTATGTGCCGGAGAATCGAGGCATAAATAACAAGGGCGGCGACACGCCGCTATTCGATCGCAGCGCCTTCAGCTACGACGTAGA
AAACGACCAGTACCAATGCCCTGCAAGCCAATGGTTACCGCTCAAGCAGGTAAACGGCCTACAGCGCATTTATGCTGTACGCGGCGACTGCACGGCTTGT
CCATTGAAATCACGCTGCACCAAGGCTAAACGTCGACACGTGACTCGGCATGTCCATGAGGCCGCATTCGAGCGCATGCATCAGCGGATGCAGGTGCATC
CAGAGATGATGGTCAGGCGCAGCTCCATCGTCGAACATCCCTTCGGCAACCTGAAGCAATGGATTTTGGGTAATGGTCGCTTCCTGCTCCGACAACTGCA
GGGCGCTCGGACGGAAATGGCCCTGGCGGTCAACGCCTACAACCTGAAGCGTGCCATCAATGTGATGGGTGCCCGTCGGTTGATCGAGCTGTTGGGGTAA
ATCCCGCTTTCCATTTCCAAGCATCAAAAACACCAACGCCCCGAACCAGTCGGGGCGTTGGATTTTTCTGGCGTCAGTGCGTTTTCACACGCTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1422 bp | 473 aa | 79 | 1500 | + | No |
Chemistry : DDE
ORF sequence :
MGYIQGEGRQQSSLFPPTLEELVPEDHLVRVIEAYVARLDLQALGFSKAEPLKTGRPGYDPADLLKLYLYGYFQRIRSSRRLEAECQRNVEVMWLLGRLA
PDFKTIADFRKDNSAAFQATCRTFVQFCRQVGLISGQLVAIDGSKFQAVASQRKHLSLTKLKRQQGKLEAQIARYLAELDEADRSEAAEVVDRSAVKAAL
QQLESRHADNLTAQALMEVQGVEQFVVGESEARMMRTHQGARVAYNVQSAVDGEHGLILHHAVTQDGSDNQQLEPMAKAAQAILEQEELTVTADAGYSNG
EQFQACDDAGITAYVPENRGINNKGGDTPLFDRSAFSYDVENDQYQCPASQWLPLKQVNGLQRIYAVRGDCTACPLKSRCTKAKRRHVTRHVHEAAFERM
HQRMQVHPEMMVRRSSIVEHPFGNLKQWILGNGRFLLRQLQGARTEMALAVNAYNLKRAINVMGARRLIELLG
PDFKTIADFRKDNSAAFQATCRTFVQFCRQVGLISGQLVAIDGSKFQAVASQRKHLSLTKLKRQQGKLEAQIARYLAELDEADRSEAAEVVDRSAVKAAL
QQLESRHADNLTAQALMEVQGVEQFVVGESEARMMRTHQGARVAYNVQSAVDGEHGLILHHAVTQDGSDNQQLEPMAKAAQAILEQEELTVTADAGYSNG
EQFQACDDAGITAYVPENRGINNKGGDTPLFDRSAFSYDVENDQYQCPASQWLPLKQVNGLQRIYAVRGDCTACPLKSRCTKAKRRHVTRHVHEAAFERM
HQRMQVHPEMMVRRSSIVEHPFGNLKQWILGNGRFLLRQLQGARTEMALAVNAYNLKRAINVMGARRLIELLG
Blast result :
Comments
ISPsko2 is 83% aa similar to ISPpu20.
References
1] Xiaoyuan Jiang (2019) Direct submission.