ISAba52

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Acinetobacter baumannii
Acinetobacter baumannii strain J9
Acinetobacter baumannii strain 34AB plasmid p34AB
DNA section
IS Length : 820 bp

Ends


IR Length : 17

IRL : GGCACTGTTGCAAATAGGCTGACATGATAAGCTAAATATCTTATTTATTT
IRR : GGCACTGTTGCAAATAGAGATTTGAGTCGATGATGTTCCCTTTAAAAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
TATGATAAATCCATGAAGTG0

DNA sequence

GGCACTGTTGCAAATAGGCTGACATGATAAGCTAAATATCTTATTTATTTCGAGATACAGCAGATGAATCCCTTCCACGGTCGGCACTTTCAAGGTGAAA
TCATTCTTTGGGCTGTTCGTTGGTATTGTAAATATGGCATCAGCTATCGTGAACTTCAGGAAATGCTGGCCGAACGTGGAGTGAATGTTGATCACACCAC
AATTTATCGCTGGGTTCAGCGTTATGCTCCAGAAATGGAAAAACGTTTACGTTGGTATTGGCGTAATCCTACAGATCGACATTTATGGCATCTGGATGAA
ACTTACGTAAAAGTGAATGGCAAATGGGCATATCTATACCGTGCAGTTGACCAACGTGGCCATACTCTTGATTTCTATCTTTCTGCTAGACGAAATACCC
ATTCAGCTTATTGTTTTCTTGGAAAAATTTTAAATAATGTGAAGAAGTGGCAAATTCCACAAGTGATCAACACGGATAAAGCACCCACATATGGACGTGC
TTTATCACGGTTAAAACGGGAAGGTAAATGTCCACCAGACCTTGAGCACAGGCAGATTAAGTATAAAAATAACGTGATTGAATGTGATCATGGCAAGCTA
AAGCGGATCATCAGGGCCACATTAGGATTCAAATCTATGAAGACGGCTTATGCCACAATTAAAGGTATTGAAGTCATGCGTGCACTACGTAAAGGACAAG
CATCGTCATTTTATTATGGTCAGCCTCAGGGTGAAGTGTGTCTAATCAACAGGGTTTTCGGTCTCTAAGTACTTTTTAAAGGGAACATCATCGACTCAAA
TCTCTATTTGCAACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
705 bp234 aa64768+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNPFHGRHFQGEIILWAVRWYCKYGISYRELQEMLAERGVNVDHTTIYRWVQRYAPEMEKRLRWYWRNPTDRHLWHLDETYVKVNGKWAYLYRAVDQRGH
TLDFYLSARRNTHSAYCFLGKILNNVKKWQIPQVINTDKAPTYGRALSRLKREGKCPPDLEHRQIKYKNNVIECDHGKLKRIIRATLGFKSMKTAYATIK
GIEVMRALRKGQASSFYYGQPQGEVCLINRVFGL

 

Blast result :
Comments
ISAba52 is 98% aa similar to IS1006.
References
1] Hamidian M and Hall RM. Direct submission