ISH12
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002607 | ND | Halobacterium sp. | Halobacterium sp. NRC-1 plasmid pNRC200 Halobacterium sp. NRC-1 |
DNA section
IS Length : 1895 bp
Ends
Left end : CTTGATTCAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGTGTTCCGACGCTCAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTAAG II struct. : No
Right end : CAGATGACGCTCGGAGAGGTCGGGTCGGAACCCACTGCCGGTAGTTAACCGGTATTCCCATGCAAGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCGTTTCACGCT | CTAT | TGTTGGGTATTA | TCAC |
DNA sequence
CTTGATTCAGCGAGAGAATCCCGCCCTTCCCGTGAGTGACGAGTGTTCCGACGCTCAGTCGGAACCGAGGAGCGAACAGGGCGGGAGTGAATCGCGTAAG
CTCTGTGCAACAAACCACTCGGTTTCTCCCTGCTGAATACCCCACGTCACAAGAGTTATCTGAATTGGGTGTCTCGTATCTGCTAAGGCCAAATGGAGTA
TCATCTGCAAACCGGGTCGCACACAGTGTACGCGCTTCAGTACCACTTCGTGACTGTCACGAAGTACCGGGCCGATATTCTCACGTATGAGCGGCTGGAG
CGTGTGGCTGAAATCGCCCACGATATTGCAGACGACTTCGAGGCCGACATCAAGAACGTGGACGGTGGTACCGACCACGTTCACATCCTGTTTCAGACCA
AACCAACCACAGACCTCACGAAGTTCATCAACTCACTCAAAGGTGTCACGTCCCGACGGATACGGTCGGAGTTTCCCGAAGTAACACAGACGCTCGAAGA
TGCGTTCTGGCAACCGGGATACTTCCTCGCCACGACCGGCCAAGTGAGCATTGACACGCTGATGGACTACGTGGACGACCAGTAGCATGACCGCGACAAC
CACAAAAACGCTGGAAGCTACACTCGCCCCGCCGACAGCCCACAAAGAGCGGAAACTGTGTGACCTGCTCGAAACCTACCGTGAGGGGCTACACGAAGCG
TTCGACGCCGGGTGTGACACGATGACCGCCACCAGCGACGTGGTGACGCCCTACGACCTCCCGTATCAGGCGAAAGCAGCTCTCTGCAACTACGTCCCAC
AACTGCACGACACCTACAACGCACAGGAGTTAGACGACGACCACCCGGTTCGGCTTACCAACCAAGCCGCCGAGTTCGACCACTCGGCGGCGCGTGACTA
CGAGTTCACATGGTGGGCACCGCAACCCGGTCGCGGGACGAATTTCTGGATACCGCTTCGTATCAACCCCGAACAAGACGGTCTGTGGCACGACCTCGTA
CACGGTGAGGCGTCGGCAGGCCAACTCCGCCTGCAACGCCACCGCACGTCGTGGACGCTCCACGTCACTGTCGAGTTCCCGGTCGAACAACCGGACTATG
AGCCGACCGACGAGGATGTGACGCCAGTCGGCTTTGATATTGGCGAAGCGCACCTGCTCGCGGGCTGTGCCTGCAAGCAGGGCACTCCGACTGACCCACT
GCTCATCAACGGCGGCCGCGCTCGTCACCTCCGCAAAGAGATGTTCACAACGCTGAAGCGACTGCAAGAGCGTGACGCCGCCCAGTGGCGGATTGACGAG
CGATTCGACCACTACCAGAACGCACTCACAGACATCATCGAAAAGGCGTCTCGGCAAGCAATCGAGTACGCCTGCCGATTCGAGAAGCCTGTGGTCGTTC
TGGAAGACCTCTCGTACATCCGCGAAGACCTCGACTACGGCGAATGGATGAACCGACGCCTCCACGCATGGGCGTTCGCTCGCTTGCAGGAGCGTATCGA
GGACAAAGCACGAGAGGCTGGCATCCCGGTCGAATACATTCGCCCGGAGTACACGAGCCAGACGTGCCACGAGTGCGGCCACATCGGGTATCGGGACGGC
GATGAGTTCCGGTGTCAGAACGACGAGTGTTGGGTATCGGAGTACCACGCAGACATCAACGCGGCGGTCAACATCGCTGACCGCCACGACCCGTGGGGTG
AGAGCCTGCCGCTGAAACCGGCGGGCGATGACATCTCACGGGATGGGAGCGCCTGTGACAGCGCCGCGACCCCCACCGAGCAGAGCCAACCACGGCAGAT
GACGCTCGGAGAGGTCGGGTCGGAACCCACTGCCGGTAGTTAACCGGTATTCCCATGCAAGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
CTCTGTGCAACAAACCACTCGGTTTCTCCCTGCTGAATACCCCACGTCACAAGAGTTATCTGAATTGGGTGTCTCGTATCTGCTAAGGCCAAATGGAGTA
TCATCTGCAAACCGGGTCGCACACAGTGTACGCGCTTCAGTACCACTTCGTGACTGTCACGAAGTACCGGGCCGATATTCTCACGTATGAGCGGCTGGAG
CGTGTGGCTGAAATCGCCCACGATATTGCAGACGACTTCGAGGCCGACATCAAGAACGTGGACGGTGGTACCGACCACGTTCACATCCTGTTTCAGACCA
AACCAACCACAGACCTCACGAAGTTCATCAACTCACTCAAAGGTGTCACGTCCCGACGGATACGGTCGGAGTTTCCCGAAGTAACACAGACGCTCGAAGA
TGCGTTCTGGCAACCGGGATACTTCCTCGCCACGACCGGCCAAGTGAGCATTGACACGCTGATGGACTACGTGGACGACCAGTAGCATGACCGCGACAAC
CACAAAAACGCTGGAAGCTACACTCGCCCCGCCGACAGCCCACAAAGAGCGGAAACTGTGTGACCTGCTCGAAACCTACCGTGAGGGGCTACACGAAGCG
TTCGACGCCGGGTGTGACACGATGACCGCCACCAGCGACGTGGTGACGCCCTACGACCTCCCGTATCAGGCGAAAGCAGCTCTCTGCAACTACGTCCCAC
AACTGCACGACACCTACAACGCACAGGAGTTAGACGACGACCACCCGGTTCGGCTTACCAACCAAGCCGCCGAGTTCGACCACTCGGCGGCGCGTGACTA
CGAGTTCACATGGTGGGCACCGCAACCCGGTCGCGGGACGAATTTCTGGATACCGCTTCGTATCAACCCCGAACAAGACGGTCTGTGGCACGACCTCGTA
CACGGTGAGGCGTCGGCAGGCCAACTCCGCCTGCAACGCCACCGCACGTCGTGGACGCTCCACGTCACTGTCGAGTTCCCGGTCGAACAACCGGACTATG
AGCCGACCGACGAGGATGTGACGCCAGTCGGCTTTGATATTGGCGAAGCGCACCTGCTCGCGGGCTGTGCCTGCAAGCAGGGCACTCCGACTGACCCACT
GCTCATCAACGGCGGCCGCGCTCGTCACCTCCGCAAAGAGATGTTCACAACGCTGAAGCGACTGCAAGAGCGTGACGCCGCCCAGTGGCGGATTGACGAG
CGATTCGACCACTACCAGAACGCACTCACAGACATCATCGAAAAGGCGTCTCGGCAAGCAATCGAGTACGCCTGCCGATTCGAGAAGCCTGTGGTCGTTC
TGGAAGACCTCTCGTACATCCGCGAAGACCTCGACTACGGCGAATGGATGAACCGACGCCTCCACGCATGGGCGTTCGCTCGCTTGCAGGAGCGTATCGA
GGACAAAGCACGAGAGGCTGGCATCCCGGTCGAATACATTCGCCCGGAGTACACGAGCCAGACGTGCCACGAGTGCGGCCACATCGGGTATCGGGACGGC
GATGAGTTCCGGTGTCAGAACGACGAGTGTTGGGTATCGGAGTACCACGCAGACATCAACGCGGCGGTCAACATCGCTGACCGCCACGACCCGTGGGGTG
AGAGCCTGCCGCTGAAACCGGCGGGCGATGACATCTCACGGGATGGGAGCGCCTGTGACAGCGCCGCGACCCCCACCGAGCAGAGCCAACCACGGCAGAT
GACGCTCGGAGAGGTCGGGTCGGAACCCACTGCCGGTAGTTAACCGGTATTCCCATGCAAGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
393 bp | 130 aa | 193 | 585 | + | No |
Chemistry : Y1
ORF sequence :
MEYHLQTGSHTVYALQYHFVTVTKYRADILTYERLERVAEIAHDIADDFEADIKNVDGGTDHVHILFQTKPTTDLDATKFINSLKGVTSRRIRSEFPEVT
QTLEDAFWQPGYFLATTGQVSIDTLMDYVDDQDA
QTLEDAFWQPGYFLATTGQVSIDTLMDYVDDQDA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 587 | 1843 | + | No |
AG : TnpB
ORF sequence :
MTATTTKTLEATLAPPTAHKERKLCDLLETYREGLHEAFDAGCDTMTATSDVVTPYDLPYQAKAALCNYVPQLHDTYNAQELDDDHPVRLTNQAAEFDHS
AARDYEFTWWAPQPGRGTNFWIPLRINPEQDGLWHDLVHGEASAGQLRLQRHRTSWTLHVTVEFPVEQPDYEPTDEDVTPVGFDIGEAHLLAGCACKQGT
PTDPLLINGGRARHLRKEMFTTLKRLQERDAAQWRIDERFDHYQNALTDIIEKASRQAIEYACRFEKPVVVLEDLSYIREDLDYGEWMNRRLHAWAFARL
QERIEDKAREAGIPVEYIRPEYTSQTCHECGHIGYRDGDEFRCQNDECWVSEYHADINAAVNIADRHDPWGESLPLKPAGDDISRDGSACDSAATPTEQS
QPRQMTLGEVGSEPTAGS
AARDYEFTWWAPQPGRGTNFWIPLRINPEQDGLWHDLVHGEASAGQLRLQRHRTSWTLHVTVEFPVEQPDYEPTDEDVTPVGFDIGEAHLLAGCACKQGT
PTDPLLINGGRARHLRKEMFTTLKRLQERDAAQWRIDERFDHYQNALTDIIEKASRQAIEYACRFEKPVVVLEDLSYIREDLDYGEWMNRRLHAWAFARL
QERIEDKAREAGIPVEYIRPEYTSQTCHECGHIGYRDGDEFRCQNDECWVSEYHADINAAVNIADRHDPWGESLPLKPAGDDISRDGSACDSAATPTEQS
QPRQMTLGEVGSEPTAGS
Blast result :
Comments
ISH12 is 94% (TnpA) and 97% (TnpB) aa similar to ISNph5.
Comparing to ISNph5, there is an insertion of 48 pb in the left end of the IS.
File updated : March 25 2015.
Comparing to ISNph5, there is an insertion of 48 pb in the left end of the IS.
File updated : March 25 2015.
References
1] Ng,W.V., Kennedy,S.P., Mahairas,G.G., Berquist,B., Pan,M., Shukla,H.D., Lasky,S.R., Baliga,N., Thorsson,V., Sbrogna,J., Swartzell,S., Weir,D., Hall,J., Dahl,T.A., Welti,R., Goo,Y.A., Leithauser,B., Keller,K., Cruz,R., Danson,M.J., Hough,D.W., Maddocks,D.G., Jablonski,P.E., Krebs,M.P., Angevine,C.M., Dale,H., Isenbarger,T.A., Peck,R.F., Pohlschrod,M., Spudich,J.L., Jung,K.-H., Alam,M., Freitas,T., Hou,S., Daniels,C.J., Dennis,P.P., Omer,A.D., Ebhardt,H., Lowe,T.M., Liang,P., Riley,M., Hood,L. and DasSarma,S.(2000) Proc. Natl. Acad. Sci. USA 24 (97), 12176-12181.