ISAlw24
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Acinetobacter lwoffii | Acinetobacter lwoffii Acinetobacter lwoffii M2a |
DNA section
IS Length : 1197 bp
Ends
IR Length : 21/26
IRL : TGTATTAGTTCAGACTTGATCGGACATTCTTCTTGAAAAAGAGAAAGTTA
IRR : TGTACTAGCTCAAACCTGATCTGACAGTTACCCATTTTTTATTGTGCCTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TACAGGCGTATGGCTTAAGC | GGAATAGAGATAAAAAGAAA | 0 |
DNA sequence
TGTATTAGTTCAGACTTGATCGGACATTCTTCTTGAAAAAGAGAAAGTTACCCGTTTTGATAAAGGTGTCGAAATCTTAATCAAACAAAGGTAACTTTCT
TATGTTGCATACTAACAATCAAATTATCAAACACAAAGTAGGCTTACTCAATTTAGCCGAAGAACTTCAGAACGTTTCTAGAGCATGCAAAGTGATGGGT
GTCTCTAGAGATACTTTCTATCGCTATCAGGAGTTAGTACAGTCTGGTGACATTGATGCATTGATCAATAAGTCCCGTCGAGTGCCTAATCTAAAAAACC
GTGTAGATGATGCTACAGAGCTAGCGGTCATTGATTTCGCAATTCAATATCCAGCTTATGGTCAGCATCGTACCAGTAACGAATTGCGCAAGAAGGGTGT
ATTTGTTTCAGGGAGTGGTGTTCGCTCTATTTGGCTCCGCCATGATTTGGAGAACTTTAAGAAGCGTTTAAAAGCTCTCGAAGCTAAAGTGGCGCAGGAT
GGTATCGAACTAAATGATCATCAGATTGCTGCACTTGAGCGTAAGCATGAAGATGATGTGGCATGTGGTGAAATAGAAACAGCTCATCCAGGCTATTTAG
GTGCGCAAGATACCTTTTATGTCGGGAATCTCAAGGGTGTTGGACGGATCTACCAGCAAACATTTATCGATACTTATAGCAAGGTCGTTCATTGCAAGCT
CTATACAACCAAAACACCAATTACAGCGGCTGATTTACTCAATGATCGTGTATTACCTTTCTATCAATCCCAGGATTTACCAATGCTTCGCATTCTTACA
GACAGAGGAACCGAGTATTGCGGGAAGGTGGAACAACATGACTATGAGTTGTATCTAGCCCTCAATGACATTGATCACACGAAGACAAAAGCAGCTTCAC
CACAAACGAATGGGATCTGTGAACGCTTCCATAAAACAATACTGCAGGAGTTTTATCAAATTACATTTAGGAAAAAGCTTTATAGCACACTAGAAGAGTT
GCAGACGGATCTAGACGACTGGCTGAAATTCTATAATACTGAACGGACTCATCAAGGAAAAATGTGCTGTGGTCGTACACCATTTGAAACTTTACTTGAT
GGAAAACAAATTTGGGCTGAGAAGAATTTAGCTCAAATTTAACCTGACAGGCACAATAAAAAATGGGTAACTGTCAGATCAGGTTTGAGCTAGTACA
TATGTTGCATACTAACAATCAAATTATCAAACACAAAGTAGGCTTACTCAATTTAGCCGAAGAACTTCAGAACGTTTCTAGAGCATGCAAAGTGATGGGT
GTCTCTAGAGATACTTTCTATCGCTATCAGGAGTTAGTACAGTCTGGTGACATTGATGCATTGATCAATAAGTCCCGTCGAGTGCCTAATCTAAAAAACC
GTGTAGATGATGCTACAGAGCTAGCGGTCATTGATTTCGCAATTCAATATCCAGCTTATGGTCAGCATCGTACCAGTAACGAATTGCGCAAGAAGGGTGT
ATTTGTTTCAGGGAGTGGTGTTCGCTCTATTTGGCTCCGCCATGATTTGGAGAACTTTAAGAAGCGTTTAAAAGCTCTCGAAGCTAAAGTGGCGCAGGAT
GGTATCGAACTAAATGATCATCAGATTGCTGCACTTGAGCGTAAGCATGAAGATGATGTGGCATGTGGTGAAATAGAAACAGCTCATCCAGGCTATTTAG
GTGCGCAAGATACCTTTTATGTCGGGAATCTCAAGGGTGTTGGACGGATCTACCAGCAAACATTTATCGATACTTATAGCAAGGTCGTTCATTGCAAGCT
CTATACAACCAAAACACCAATTACAGCGGCTGATTTACTCAATGATCGTGTATTACCTTTCTATCAATCCCAGGATTTACCAATGCTTCGCATTCTTACA
GACAGAGGAACCGAGTATTGCGGGAAGGTGGAACAACATGACTATGAGTTGTATCTAGCCCTCAATGACATTGATCACACGAAGACAAAAGCAGCTTCAC
CACAAACGAATGGGATCTGTGAACGCTTCCATAAAACAATACTGCAGGAGTTTTATCAAATTACATTTAGGAAAAAGCTTTATAGCACACTAGAAGAGTT
GCAGACGGATCTAGACGACTGGCTGAAATTCTATAATACTGAACGGACTCATCAAGGAAAAATGTGCTGTGGTCGTACACCATTTGAAACTTTACTTGAT
GGAAAACAAATTTGGGCTGAGAAGAATTTAGCTCAAATTTAACCTGACAGGCACAATAAAAAATGGGTAACTGTCAGATCAGGTTTGAGCTAGTACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1041 bp | 346 aa | 102 | 1142 | + | No |
Chemistry : DDE
ORF sequence :
MLHTNNQIIKHKVGLLNLAEELQNVSRACKVMGVSRDTFYRYQELVQSGDIDALINKSRRVPNLKNRVDDATELAVIDFAIQYPAYGQHRTSNELRKKGV
FVSGSGVRSIWLRHDLENFKKRLKALEAKVAQDGIELNDHQIAALERKHEDDVACGEIETAHPGYLGAQDTFYVGNLKGVGRIYQQTFIDTYSKVVHCKL
YTTKTPITAADLLNDRVLPFYQSQDLPMLRILTDRGTEYCGKVEQHDYELYLALNDIDHTKTKAASPQTNGICERFHKTILQEFYQITFRKKLYSTLEEL
QTDLDDWLKFYNTERTHQGKMCCGRTPFETLLDGKQIWAEKNLAQI
FVSGSGVRSIWLRHDLENFKKRLKALEAKVAQDGIELNDHQIAALERKHEDDVACGEIETAHPGYLGAQDTFYVGNLKGVGRIYQQTFIDTYSKVVHCKL
YTTKTPITAADLLNDRVLPFYQSQDLPMLRILTDRGTEYCGKVEQHDYELYLALNDIDHTKTKAASPQTNGICERFHKTILQEFYQITFRKKLYSTLEEL
QTDLDDWLKFYNTERTHQGKMCCGRTPFETLLDGKQIWAEKNLAQI
Blast result :Comments : ISAlw24 is 84% aa similar to ISSod13. This sequence is disrupted by an isoISAba125 insertion, which have generated a 3-bp duplication . The sequence was reconstituted in silico by the deletion of the IS element and one copy of the duplication.
Comments
ISAlw24 is 92% aa similar to ISSod13.
ISAlw24 is integrated in an isoISAba44 copy in strain M2a. The closest relative (92% similar) of ISAlw24 occurs in three copies in Acinetobacter johnsonii strain IC001 chromosome (CP022298.1).
ISAlw24 is integrated in an isoISAba44 copy in strain M2a. The closest relative (92% similar) of ISAlw24 occurs in three copies in Acinetobacter johnsonii strain IC001 chromosome (CP022298.1).
References