ISAlw19
- Family IS982
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Acinetobacter lwoffii | Acinetobacter lwoffii Acinetobacter lwoffii M2a Acinetobacter sp. ACNIH1 |
DNA section
IS Length : 980 bp
Ends
IR Length : 13
IRL : acctgagttcgatataaaaaaagagtagaaaaaaagccctgtttttgtaa
IRR : acctgagttcgatgaaatccacttaaccttttagcatattttggaaagtt
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ctcaaatattttaatcttca | tatttata | gaatagtcctttaaaggagc | 8 |
DNA sequence
ACCTGAGTTCGATATAAAAAAAGAGTAGAAAAAAAGCCCTGTTTTTGTAACATATTGGTTCTCAAGACAAAATGTTATAAAACAAGGCTTCTCAATGGAT
CATATTACCGAATTATTTTGTATTTTGGATGATTTCTGCAAAAAATTTAATGAATCTTTAGAGAAAGCTTTAATTTCTAATCAAAAAACCAGGTTGAAAA
AGTCAGCTTTAAGCTTGTCTGAAGCAATGACCATTGTCATTTTATTTCATCAATCCGGTTTTAGATTCTTCAAATATTTTTATTGCCAAATGATCGTTCC
ATTCTGGAAATCTGCTTTTCCTAAACTGCTTAGCTACAACCGATTTATTGAAATCATGCCCCGTTGTTTGCAAGCTCTGAGTAGTTTCTTCCATCAGGTG
AAAGGAAAAGATACGGGAATCAGTATCATTGACTCCACTAAATTGGTAGTTTGCCATAATCTTCGGATTAAAAGGCATCGTGTATTTAAAGGCTTGGCCG
GTCGTGGAAAAAGTAGTACGGGTTGGTTTTATGGTTTTAAATTACATCTCGTTATCAATAATTTAGGTGAAATTATTAATCTCAAGCTGACATCGGGAAA
TGTTCATGATGTTGCTATATTAGAATCTTTAACTCAAGAATTAAAAGGAATCCTACTCGGAGACAAAGGCTATTTGAGCAAAGCAAAAGCCGAAGCTTTA
GCAGCAAGAGGACTGAAAATATTGACCCCATCACGTCGGAATATGAAAAATAAACCCATCCAAACTGAAGAAGAAAAACAATTACTTTGCAGAAGAGGAT
TGATCGAAACAGTGAATGATCAATTAAAAAATTTACATCAACTTGAACATTCACGTCATCGTTCGGTAAATAACTTCATGGTGAATATCATGGCTGCTGT
AGTGGCTTATTGTTTGAACCCCAATAAGCCAACTTTCCAAAATATGCTAAAAGGTTAAGTGGATTTCATCGAACTCAGGT
CATATTACCGAATTATTTTGTATTTTGGATGATTTCTGCAAAAAATTTAATGAATCTTTAGAGAAAGCTTTAATTTCTAATCAAAAAACCAGGTTGAAAA
AGTCAGCTTTAAGCTTGTCTGAAGCAATGACCATTGTCATTTTATTTCATCAATCCGGTTTTAGATTCTTCAAATATTTTTATTGCCAAATGATCGTTCC
ATTCTGGAAATCTGCTTTTCCTAAACTGCTTAGCTACAACCGATTTATTGAAATCATGCCCCGTTGTTTGCAAGCTCTGAGTAGTTTCTTCCATCAGGTG
AAAGGAAAAGATACGGGAATCAGTATCATTGACTCCACTAAATTGGTAGTTTGCCATAATCTTCGGATTAAAAGGCATCGTGTATTTAAAGGCTTGGCCG
GTCGTGGAAAAAGTAGTACGGGTTGGTTTTATGGTTTTAAATTACATCTCGTTATCAATAATTTAGGTGAAATTATTAATCTCAAGCTGACATCGGGAAA
TGTTCATGATGTTGCTATATTAGAATCTTTAACTCAAGAATTAAAAGGAATCCTACTCGGAGACAAAGGCTATTTGAGCAAAGCAAAAGCCGAAGCTTTA
GCAGCAAGAGGACTGAAAATATTGACCCCATCACGTCGGAATATGAAAAATAAACCCATCCAAACTGAAGAAGAAAAACAATTACTTTGCAGAAGAGGAT
TGATCGAAACAGTGAATGATCAATTAAAAAATTTACATCAACTTGAACATTCACGTCATCGTTCGGTAAATAACTTCATGGTGAATATCATGGCTGCTGT
AGTGGCTTATTGTTTGAACCCCAATAAGCCAACTTTCCAAAATATGCTAAAAGGTTAAGTGGATTTCATCGAACTCAGGT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 864 bp | 287 aa | 95 | 958 | + | No |
Chemistry : DDE
ORF sequence :
MDHITELFCILDDFCKKFNESLEKALISNQKTRLKKSALSLSEAMTIVILFHQSGFRFFKYFYCQMIVPFWKSAFPKLLSYNRFIEIMPRCLQALSSFFH
QVKGKDTGISIIDSTKLVVCHNLRIKRHRVFKGLAGRGKSSTGWFYGFKLHLVINNLGEIINLKLTSGNVHDVAILESLTQELKGILLGDKGYLSKAKAE
ALAARGLKILTPSRRNMKNKPIQTEEEKQLLCRRGLIETVNDQLKNLHQLEHSRHRSVNNFMVNIMAAVVAYCLNPNKPTFQNMLKG
QVKGKDTGISIIDSTKLVVCHNLRIKRHRVFKGLAGRGKSSTGWFYGFKLHLVINNLGEIINLKLTSGNVHDVAILESLTQELKGILLGDKGYLSKAKAE
ALAARGLKILTPSRRNMKNKPIQTEEEKQLLCRRGLIETVNDQLKNLHQLEHSRHRSVNNFMVNIMAAVVAYCLNPNKPTFQNMLKG
Blast result :
Comments
ISAlw19 is 71% aa similar to ISVsa6.
Acinetobacter sp. ACNIH1 chromosome and its plasmid pACI-df08 contain 6 and 1 ISAlw19 copies, respectively, differing in 2-3 bp positions from ISAlw19 identified in A. lwoffii M2a.
Acinetobacter sp. ACNIH1 chromosome and its plasmid pACI-df08 contain 6 and 1 ISAlw19 copies, respectively, differing in 2-3 bp positions from ISAlw19 identified in A. lwoffii M2a.
References