ISAlw7
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Acinetobacter lwoffii | Acinetobacter lwoffii Acinetobacter lwoffii M2a |
DNA section
IS Length : 1267 bp
Ends
IR Length : 17/19
IRL : CACTGCTGTCCCATAGTTTGATTTAAATAAAAAACCTGAGTCCAAATCGT
IRR : CACTGCTGTCCCACAATTTTTACAAGAGGAAGCTCATTTAAGCTTCCTCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| gtccccctttaaaaaagggg | gGatttcctc | tcctattaaggacacggtta | 10 |
DNA sequence
CACTGCTGTCCCATAGTTTGATTTAAATAAAAAACCTGAGTCCAAATCGTTAAAATATGAGTGCAAACAAACACTTTAACGACCAGGATTCAGGTTTTGT
CACATCAGAATACCGTATTTCATCAGCTTATTAAACCCGTCGTGCGACAGGATTTTGAGCAACTTGCTAAAGTACACCATGTTGGACAGAAATTTAGAGC
GGCTTCAAGATGGGATCAGTTTATTGCCATCTTGATGTCTCAACTTTCCTGCAGGCAAAGTCTGAGAGATATTCAATCCAATCTGGAGTGCCAACAGGAC
AAACTGAGTCATTTCGGAGCAAAGTCTATTCCCCGAAGTACACTGGCACGAATCAATGAGCAGCAGCCTGCTGCCTTGTATCAACAGCTCTTTTACAAGT
TGCTTAAATACTATGAACACTCAAAAGTAGCCCATAAATTTCGCTTTAAGAATCCATTATATTCCCTGGATGCCAGTCATATTGACCTGTCGCTTTCCTT
ATGTGAATGGGCCAAAGTTCACGACTCAAAAGCCAGCATGAAACTCAGCATAGGATTGAATCACAGCAATGATATTCCTGAGTTTATTGCAGTTGAAAAT
GGTAAAGAAAATGACATGTTACAAGGCCGAAAATTCCAGTTTCCCGCTGGCAGCATTGTGGTCTTTGATAAAGGCTATGTCGATTATCAATGGTATGCGA
ATCTAAGCGCTCAAAACGTTAGCTTTGTGACACGTTTTAGACCTAAATCGGTGTATCAGGTGATCCAGCAACATCCCGTGCTTGAATCCAAAGGCATTCT
AAAAGATGAAACCATTCAGCTAAATAGCGCACATGCCCTAAAAAGAAAAGCCCCCGTATTAAGAAGAATTGAATATAGAGATCAGCAAAGTGGCAAGCAC
TTTAGCTTTCTCAGCAATAACTTTCATCTAGCTGCCTCTACCATTGCAGCGATTTACAAAGACCGCTGGAAAGTTGAATTGTTCTTTAAAGCGATTAAAC
AGAACCTGAAATTAAAAGCCTTTTTAGGCCGAAGCAAGAACGCCATTCAGACGCAAATCTGGATTGCGATGATCGCCTATTTACTGGTAAGTTTCGCTCA
ACATTTAGGGAAAAAAGGCTGGACAGTTCAGCGCTTACTCAGAATAATTCAAGTGAATTTATTTGAAATAAAAACCTTAAAAGCGTTATTTTCACCCGAT
AAAGTCCCCATCAAACAAGAGGAAGCTTAAATGAGCTTCCTCTTGTAAAAATTGTGGGACAGCAGTG
CACATCAGAATACCGTATTTCATCAGCTTATTAAACCCGTCGTGCGACAGGATTTTGAGCAACTTGCTAAAGTACACCATGTTGGACAGAAATTTAGAGC
GGCTTCAAGATGGGATCAGTTTATTGCCATCTTGATGTCTCAACTTTCCTGCAGGCAAAGTCTGAGAGATATTCAATCCAATCTGGAGTGCCAACAGGAC
AAACTGAGTCATTTCGGAGCAAAGTCTATTCCCCGAAGTACACTGGCACGAATCAATGAGCAGCAGCCTGCTGCCTTGTATCAACAGCTCTTTTACAAGT
TGCTTAAATACTATGAACACTCAAAAGTAGCCCATAAATTTCGCTTTAAGAATCCATTATATTCCCTGGATGCCAGTCATATTGACCTGTCGCTTTCCTT
ATGTGAATGGGCCAAAGTTCACGACTCAAAAGCCAGCATGAAACTCAGCATAGGATTGAATCACAGCAATGATATTCCTGAGTTTATTGCAGTTGAAAAT
GGTAAAGAAAATGACATGTTACAAGGCCGAAAATTCCAGTTTCCCGCTGGCAGCATTGTGGTCTTTGATAAAGGCTATGTCGATTATCAATGGTATGCGA
ATCTAAGCGCTCAAAACGTTAGCTTTGTGACACGTTTTAGACCTAAATCGGTGTATCAGGTGATCCAGCAACATCCCGTGCTTGAATCCAAAGGCATTCT
AAAAGATGAAACCATTCAGCTAAATAGCGCACATGCCCTAAAAAGAAAAGCCCCCGTATTAAGAAGAATTGAATATAGAGATCAGCAAAGTGGCAAGCAC
TTTAGCTTTCTCAGCAATAACTTTCATCTAGCTGCCTCTACCATTGCAGCGATTTACAAAGACCGCTGGAAAGTTGAATTGTTCTTTAAAGCGATTAAAC
AGAACCTGAAATTAAAAGCCTTTTTAGGCCGAAGCAAGAACGCCATTCAGACGCAAATCTGGATTGCGATGATCGCCTATTTACTGGTAAGTTTCGCTCA
ACATTTAGGGAAAAAAGGCTGGACAGTTCAGCGCTTACTCAGAATAATTCAAGTGAATTTATTTGAAATAAAAACCTTAAAAGCGTTATTTTCACCCGAT
AAAGTCCCCATCAAACAAGAGGAAGCTTAAATGAGCTTCCTCTTGTAAAAATTGTGGGACAGCAGTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1134 bp | 377 aa | 97 | 1230 | + | No |
Chemistry : DDE
ORF sequence :
MSHQNTVFHQLIKPVVRQDFEQLAKVHHVGQKFRAASRWDQFIAILMSQLSCRQSLRDIQSNLECQQDKLSHFGAKSIPRSTLARINEQQPAALYQQLFY
KLLKYYEHSKVAHKFRFKNPLYSLDASHIDLSLSLCEWAKVHDSKASMKLSIGLNHSNDIPEFIAVENGKENDMLQGRKFQFPAGSIVVFDKGYVDYQWY
ANLSAQNVSFVTRFRPKSVYQVIQQHPVLESKGILKDETIQLNSAHALKRKAPVLRRIEYRDQQSGKHFSFLSNNFHLAASTIAAIYKDRWKVELFFKAI
KQNLKLKAFLGRSKNAIQTQIWIAMIAYLLVSFAQHLGKKGWTVQRLLRIIQVNLFEIKTLKALFSPDKVPIKQEEA*
KLLKYYEHSKVAHKFRFKNPLYSLDASHIDLSLSLCEWAKVHDSKASMKLSIGLNHSNDIPEFIAVENGKENDMLQGRKFQFPAGSIVVFDKGYVDYQWY
ANLSAQNVSFVTRFRPKSVYQVIQQHPVLESKGILKDETIQLNSAHALKRKAPVLRRIEYRDQQSGKHFSFLSNNFHLAASTIAAIYKDRWKVELFFKAI
KQNLKLKAFLGRSKNAIQTQIWIAMIAYLLVSFAQHLGKKGWTVQRLLRIIQVNLFEIKTLKALFSPDKVPIKQEEA*
Blast result :
Comments
ISAlw7 is 98% aa similar to ISAbe18.
References