ISPa100
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP032257 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa AR_0111 Enterobacter cloacae AR_038 |
DNA section
IS Length : 1280 bp
Ends
IR Length : 21/22
IRL : GGGCACCTCTAAAAACCCCCGTCCTACCCTGACCTACCGCCCAAACAGTT
IRR : GGGCACCTCTAAAAACCGCCGTTTTCAGCAGCGTGCCGACTGAGGCAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGTTGCAGCACCGGC | GTAT | GTGGCGTTGAAGTAGA | 4 |
DNA sequence
GGGCACCTCTAAAAACCCCCGTCCTACCCTGACCTACCGCCCAAACAGTTAGACAATCCTCCGATGAGCACACCTCCCGACCGCAGCGCCGTCAAGTTCG
ACCTGTTTGCCGATGCCGCGCGCAAGCGCAAGATCGAAGCGCTGGGCGATCCGCTGCAGCTCATTGCCCGGCACATTGACTTTGACCACCTCACGCAGGT
CATCGATGACCTGCTGCCCCGGGGAGACGGACGCAAGGGCGGACGCCCGCCGTACCCCACATCCGTCATGGTGCGCATCCTGGTCTTGAAGTACCTGAAC
CAACTGAGCGACGAGCAGGTGGAATACCAACTACTCGACCGCATGAGCTACCAGCGCTTTTGCTTGCTGGAGGACAGCGCCACCATCCCCGACCGCAATA
CCGTCTGGCATTACCAGCAGCGCCTGGGCGCCGATGGTGTGACGGCCTTGTTCCAGGCGGTCGATGGCCAGTTGCTGGGCCACGGGTTCATTGCACGCTG
CGGGCAGATCATCGACGCCACCCTGGTGCCCGCGCCCATCCAGCACTTCACCAAGGATGAGAAAGAGCAGTTGGCCCAGGGCAAGACCCCCGAGGACTGG
AGCGATGCCAAGCGCCGGCAAAAAGACCTGGACGCCACCCATACCAAGAAACACGGCAAGAGTTACCACGGCTACAAGCTGAGCATCAATGTAGACGTCA
AGCACAAGTTCATCCGCAAGATCGCCACCGGCACGGCCAGCGAGCACGACAGCAGGCACTTCGATGAGGTGCTCGACGAGCACAACACCAGCCGGGATGT
CTATGCCGACAAGGGCTACCCGAGCGCACGGCGCAGCGAAATGCTCCAGGTGCTGGGCTGGCGGGAGCATATCCAGCGCAAGGCCCAGAAGAGCAAGCCC
CTGAGCGCATGCCAGAAGAAGCGCAACACGCGCATTGCCAGGATCCGTGCCCGAGTGGAGCACCCCTTTGCCCAAATGCGCCACATGGGCGGCAAGCTCA
TTCGCACCATCGGCCAGGTGCGCGCTGCGGTGGCCATGACCATGATGGCGGCCTGCTACAACCTCAAGCGCCTGGCCAGGTTCCTCGAAGATGGGGTGGA
TGCGTTCTACAAGGGCGGGCCATCAAAGAGCGAGGTGCGCCTGCAGGGGATCAATGCGTGAGAAATGGGGCGGAAAACGCCCTGGAACATGCCATATTTG
CTTAAAAAATGGGCAGAACTGAAATGCTCGGTCTGCCTCAGTCGGCACGCTGCTGAAAACGGCGGTTTTTAGAGGTGCCC
ACCTGTTTGCCGATGCCGCGCGCAAGCGCAAGATCGAAGCGCTGGGCGATCCGCTGCAGCTCATTGCCCGGCACATTGACTTTGACCACCTCACGCAGGT
CATCGATGACCTGCTGCCCCGGGGAGACGGACGCAAGGGCGGACGCCCGCCGTACCCCACATCCGTCATGGTGCGCATCCTGGTCTTGAAGTACCTGAAC
CAACTGAGCGACGAGCAGGTGGAATACCAACTACTCGACCGCATGAGCTACCAGCGCTTTTGCTTGCTGGAGGACAGCGCCACCATCCCCGACCGCAATA
CCGTCTGGCATTACCAGCAGCGCCTGGGCGCCGATGGTGTGACGGCCTTGTTCCAGGCGGTCGATGGCCAGTTGCTGGGCCACGGGTTCATTGCACGCTG
CGGGCAGATCATCGACGCCACCCTGGTGCCCGCGCCCATCCAGCACTTCACCAAGGATGAGAAAGAGCAGTTGGCCCAGGGCAAGACCCCCGAGGACTGG
AGCGATGCCAAGCGCCGGCAAAAAGACCTGGACGCCACCCATACCAAGAAACACGGCAAGAGTTACCACGGCTACAAGCTGAGCATCAATGTAGACGTCA
AGCACAAGTTCATCCGCAAGATCGCCACCGGCACGGCCAGCGAGCACGACAGCAGGCACTTCGATGAGGTGCTCGACGAGCACAACACCAGCCGGGATGT
CTATGCCGACAAGGGCTACCCGAGCGCACGGCGCAGCGAAATGCTCCAGGTGCTGGGCTGGCGGGAGCATATCCAGCGCAAGGCCCAGAAGAGCAAGCCC
CTGAGCGCATGCCAGAAGAAGCGCAACACGCGCATTGCCAGGATCCGTGCCCGAGTGGAGCACCCCTTTGCCCAAATGCGCCACATGGGCGGCAAGCTCA
TTCGCACCATCGGCCAGGTGCGCGCTGCGGTGGCCATGACCATGATGGCGGCCTGCTACAACCTCAAGCGCCTGGCCAGGTTCCTCGAAGATGGGGTGGA
TGCGTTCTACAAGGGCGGGCCATCAAAGAGCGAGGTGCGCCTGCAGGGGATCAATGCGTGAGAAATGGGGCGGAAAACGCCCTGGAACATGCCATATTTG
CTTAAAAAATGGGCAGAACTGAAATGCTCGGTCTGCCTCAGTCGGCACGCTGCTGAAAACGGCGGTTTTTAGAGGTGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1098 bp | 365 aa | 64 | 1161 | + | No |
Chemistry : DDE
ORF sequence :
MSTPPDRSAVKFDLFADAARKRKIEALGDPLQLIARHIDFDHLTQVIDDLLPRGDGRKGGRPPYPTSVMVRILVLKYLNQLSDEQVEYQLLDRMSYQRFC
LLEDSATIPDRNTVWHYQQRLGADGVTALFQAVDGQLLGHGFIARCGQIIDATLVPAPIQHFTKDEKEQLAQGKTPEDWSDAKRRQKDLDATHTKKHGKS
YHGYKLSINVDVKHKFIRKIATGTASEHDSRHFDEVLDEHNTSRDVYADKGYPSARRSEMLQVLGWREHIQRKAQKSKPLSACQKKRNTRIARIRARVEH
PFAQMRHMGGKLIRTIGQVRAAVAMTMMAACYNLKRLARFLEDGVDAFYKGGPSKSEVRLQGINA
LLEDSATIPDRNTVWHYQQRLGADGVTALFQAVDGQLLGHGFIARCGQIIDATLVPAPIQHFTKDEKEQLAQGKTPEDWSDAKRRQKDLDATHTKKHGKS
YHGYKLSINVDVKHKFIRKIATGTASEHDSRHFDEVLDEHNTSRDVYADKGYPSARRSEMLQVLGWREHIQRKAQKSKPLSACQKKRNTRIARIRARVEH
PFAQMRHMGGKLIRTIGQVRAAVAMTMMAACYNLKRLARFLEDGVDAFYKGGPSKSEVRLQGINA
Blast result :
Comments
ISPa100 is 75% aa similar to ISAzo41.
References
1] Pawel Urbanowicz (2019) Direct submission.