ISPa100

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP032257 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa AR_0111
Enterobacter cloacae AR_038
DNA section
IS Length : 1280 bp

Ends


IR Length : 21/22

IRL : GGGCACCTCTAAAAACCCCCGTCCTACCCTGACCTACCGCCCAAACAGTT
IRR : GGGCACCTCTAAAAACCGCCGTTTTCAGCAGCGTGCCGACTGAGGCAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GTGTTGCAGCACCGGCGTATGTGGCGTTGAAGTAGA4

DNA sequence

GGGCACCTCTAAAAACCCCCGTCCTACCCTGACCTACCGCCCAAACAGTTAGACAATCCTCCGATGAGCACACCTCCCGACCGCAGCGCCGTCAAGTTCG
ACCTGTTTGCCGATGCCGCGCGCAAGCGCAAGATCGAAGCGCTGGGCGATCCGCTGCAGCTCATTGCCCGGCACATTGACTTTGACCACCTCACGCAGGT
CATCGATGACCTGCTGCCCCGGGGAGACGGACGCAAGGGCGGACGCCCGCCGTACCCCACATCCGTCATGGTGCGCATCCTGGTCTTGAAGTACCTGAAC
CAACTGAGCGACGAGCAGGTGGAATACCAACTACTCGACCGCATGAGCTACCAGCGCTTTTGCTTGCTGGAGGACAGCGCCACCATCCCCGACCGCAATA
CCGTCTGGCATTACCAGCAGCGCCTGGGCGCCGATGGTGTGACGGCCTTGTTCCAGGCGGTCGATGGCCAGTTGCTGGGCCACGGGTTCATTGCACGCTG
CGGGCAGATCATCGACGCCACCCTGGTGCCCGCGCCCATCCAGCACTTCACCAAGGATGAGAAAGAGCAGTTGGCCCAGGGCAAGACCCCCGAGGACTGG
AGCGATGCCAAGCGCCGGCAAAAAGACCTGGACGCCACCCATACCAAGAAACACGGCAAGAGTTACCACGGCTACAAGCTGAGCATCAATGTAGACGTCA
AGCACAAGTTCATCCGCAAGATCGCCACCGGCACGGCCAGCGAGCACGACAGCAGGCACTTCGATGAGGTGCTCGACGAGCACAACACCAGCCGGGATGT
CTATGCCGACAAGGGCTACCCGAGCGCACGGCGCAGCGAAATGCTCCAGGTGCTGGGCTGGCGGGAGCATATCCAGCGCAAGGCCCAGAAGAGCAAGCCC
CTGAGCGCATGCCAGAAGAAGCGCAACACGCGCATTGCCAGGATCCGTGCCCGAGTGGAGCACCCCTTTGCCCAAATGCGCCACATGGGCGGCAAGCTCA
TTCGCACCATCGGCCAGGTGCGCGCTGCGGTGGCCATGACCATGATGGCGGCCTGCTACAACCTCAAGCGCCTGGCCAGGTTCCTCGAAGATGGGGTGGA
TGCGTTCTACAAGGGCGGGCCATCAAAGAGCGAGGTGCGCCTGCAGGGGATCAATGCGTGAGAAATGGGGCGGAAAACGCCCTGGAACATGCCATATTTG
CTTAAAAAATGGGCAGAACTGAAATGCTCGGTCTGCCTCAGTCGGCACGCTGCTGAAAACGGCGGTTTTTAGAGGTGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1098 bp365 aa641161+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTPPDRSAVKFDLFADAARKRKIEALGDPLQLIARHIDFDHLTQVIDDLLPRGDGRKGGRPPYPTSVMVRILVLKYLNQLSDEQVEYQLLDRMSYQRFC
LLEDSATIPDRNTVWHYQQRLGADGVTALFQAVDGQLLGHGFIARCGQIIDATLVPAPIQHFTKDEKEQLAQGKTPEDWSDAKRRQKDLDATHTKKHGKS
YHGYKLSINVDVKHKFIRKIATGTASEHDSRHFDEVLDEHNTSRDVYADKGYPSARRSEMLQVLGWREHIQRKAQKSKPLSACQKKRNTRIARIRARVEH
PFAQMRHMGGKLIRTIGQVRAAVAMTMMAACYNLKRLARFLEDGVDAFYKGGPSKSEVRLQGINA

 

Blast result :
Comments
ISPa100 is 75% aa similar to ISAzo41.
References
1] Pawel Urbanowicz (2019) Direct submission.