ISNaoc9
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP003929 | ND | Natronococcus occultus | Natronococcus occultus SP4 |
DNA section
IS Length : 745 bp
Ends
IR Length : 15/15
IRL : GGCACTGTCTAGTTGAGCCAGTTTGAGAAACGAGCAGGTCGTTGAGTGAA
IRR : GGCACTGTCTAGTTCTGCACCTCCTCGATCGGCGTCTTTCCGTCGAGAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTATCTCTGTA | AATATTTGCTAT | 0 | |
| ATACTCCTGATA | ATACATTCTTGA | 0 |
DNA sequence
GGCACTGTCTAGTTGAGCCAGTTTGAGAAACGAGCAGGTCGTTGAGTGAATTGGTTAGGATGCTCGCAAACCTGCTCAGCGAGAGCTACGACGCGGATTT
AGAAGAATCTTGGGAGAACGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCCGTCCGCCTTCATCAGACCGGTTGTTCACTTCGGGAGACAACAACGATT
CTCGCTGAATTAGGCGTTGAACGCTCTCACGGAGCGGTCTGGAACTGGGTACATCGGCTGGCTGACAGCGGGTGCGACCCGCCTGAGGCGCAGCCGAAGC
GGGTCGCGATTGACGAGACCGCTGTCAAGATCAATGGCGAGTGGTCTTGGCTGTACGCTGCAATAGACACCGAAACGAAGCTGATTCTCGATGTCGCGTT
GTTTGGTCGGCACGGAACCGATCCGGCAGCTGCGTTTCTGCATCGACTTAACGAGAAATACGATCTCTCCGACACCGTATTTCTCGTCGATCAATTCGGC
TATCGGACTGCCCTTGCTCGATTAGGGTTAAGCGGTCGGGTCAACTATACCGAGCGAAACCTCATCGAAAAGTGGTTTCACACCCTCAAAGTGCGCATCG
ACCGCTTCCATAACTCGTGGGTGGGCAGTCGGGCGAGTGCATACGAATGGTTTGAACAATTCATGCACTACTACAACCGCCAGAGACCGCACCAAGCTCT
CGACGGAAAGACGCCGATCGAGGAGGTGCAGAACTAGACAGTGCC
AGAAGAATCTTGGGAGAACGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCCGTCCGCCTTCATCAGACCGGTTGTTCACTTCGGGAGACAACAACGATT
CTCGCTGAATTAGGCGTTGAACGCTCTCACGGAGCGGTCTGGAACTGGGTACATCGGCTGGCTGACAGCGGGTGCGACCCGCCTGAGGCGCAGCCGAAGC
GGGTCGCGATTGACGAGACCGCTGTCAAGATCAATGGCGAGTGGTCTTGGCTGTACGCTGCAATAGACACCGAAACGAAGCTGATTCTCGATGTCGCGTT
GTTTGGTCGGCACGGAACCGATCCGGCAGCTGCGTTTCTGCATCGACTTAACGAGAAATACGATCTCTCCGACACCGTATTTCTCGTCGATCAATTCGGC
TATCGGACTGCCCTTGCTCGATTAGGGTTAAGCGGTCGGGTCAACTATACCGAGCGAAACCTCATCGAAAAGTGGTTTCACACCCTCAAAGTGCGCATCG
ACCGCTTCCATAACTCGTGGGTGGGCAGTCGGGCGAGTGCATACGAATGGTTTGAACAATTCATGCACTACTACAACCGCCAGAGACCGCACCAAGCTCT
CGACGGAAAGACGCCGATCGAGGAGGTGCAGAACTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 678 bp | 225 aa | 60 | 737 | + | No |
Chemistry : DDE
ORF sequence :
MLANLLSESYDADLEESWENERTATPVRAFAVRLHQTGCSLRETTTILAELGVERSHGAVWNWVHRLADSGCDPPEAQPKRVAIDETAVKINGEWSWLYA
AIDTETKLILDVALFGRHGTDPAAAFLHRLNEKYDLSDTVFLVDQFGYRTALARLGLSGRVNYTERNLIEKWFHTLKVRIDRFHNSWVGSRASAYEWFEQ
FMHYYNRQRPHQALDGKTPIEEVQN
AIDTETKLILDVALFGRHGTDPAAAFLHRLNEKYDLSDTVFLVDQFGYRTALARLGLSGRVNYTERNLIEKWFHTLKVRIDRFHNSWVGSRASAYEWFEQ
FMHYYNRQRPHQALDGKTPIEEVQN
Blast result :
Comments
ISNaoc9 is 91% aa similar to ISNamo13.
References
1] Pfeiffer, F. (2015) Direct submission
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P. and Klenk,H.-P. (2012) Direct submission GenBank.
2] Eisen,J., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J., Klenk,H.-P. and Klenk,H.-P. (2012) Direct submission GenBank.