ISPssp4
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Psychrobacter sp. | Psychrobacter sp. DAB_AL32B Psychrobacter sp. DAB_AL32B pP32BP2 |
DNA section
IS Length : 1302 bp
Ends
IR Length : 19/28
IRL : GGGGGTTTCCTAAAAACTGTGTAACTGCTTATAATCCACTAACCGGAGAA
IRR : GAGACCATCCCGAATTCTGTGTAACTGCCATTTAGATTAAATGCTTACTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGGGAATTATAGATAGTAAACCGT | CTTAAAAA | AGATGCTTTACCATCTACAATTCTC | 8 |
DNA sequence
GGGGGTTTCCTAAAAACTGTGTAACTGCTTATAATCCACTAACCGGAGAATAAGCAATGACTACTCAATCTGACATTAAAAAACTGGCCGAGCAAATGGC
TAGTAGCATGAAAAGCTTTGATGACATCAAAGACTTCCAAAAGCAACTCATGCAATCCTTTATCGATACCGCTCTTGAAGCTGAGATGGAAGACCATCTT
GGCTATCCTAAGCATGAAAAGGCGGATAAGCCAAACAAGCGCAATGGGCACACTAAAAAGACCGTCCGCAGTGACACAGGCGATCTTGAGATCTCCACTC
CAAGAGACCGCGGTGGCAGCTTTGAGCCTATATTAGTGAGCAAGCATCAAACTCGCATCACTGGCCTTGATGATAAAATCATATTCTTTTACGCCAAGGG
CCAAACCACCACTGAGATCGTCGAAACCATTAAAGAGCTTTACGATGTCGACATATCAAGCACACTGGTTTCAAGAGTTACTGACAACATCTTAGAGGAC
ATCACCGCTTGGCAGAACCGGCCATTGAGCAGTGTTTATCCTATTGTCTATTTGGACTGCATTGTCGTGAAGATACGTCAAGACAAGCAGATCATCAACA
AAGCCATTTACTTAGCCTTAGGCGTTAACCTTAACGGTAAAAAAGAGCTGCTTGGCATGTGGCTACCAGAAAATGAGGGCGCTAAGTTCTGGCTGGGCGT
TCTCACTGAACTACAAAATCGCGGGGTGCAAGATATTCTCATTGCCTGTGTCGATGGCCTAAAAGGCTTTCCTGATGCCATTAACACCGTTTATCCCAAT
GCTCAGGTTCAGCTGTGTATCGTACACATGGTGCGCTATTCGATGAAGTTTGTACCGTGGACGGATAAGAAGGCCGTAGCGGCTGATTTAAAGGCCATCT
ATGGTGCTGATACGCTTGAGGTAGCAGAGGCCAATCTTGAGCACTTTGATGAGACTTGGGGCGATAAGTATCCGCATGTGGTCAGGTCTTGGCGCAATAA
CTGGGAGGGCTTAACGGTGTTCTTCGAGTATCCTAAAGACATCAGAAAAGCGATTTATACTACTAATGCGATAGAGTCGCTAAACAGCGTCATTCGTACG
GCGGTGAATAAGCGTAAGGTGTTCCCGTCTGATCAGGCGGCATTCAAGGTGGTTTATCTGGCAACCCAGCAGGCATCCAAAAAGTGGTCGATGCCCATCC
GTAACTGGACGTCTGCTTTAAATCGCTTTATGATTATGTTTGATGACCGTATTAGTAAGCATTTAATCTAAATGGCAGTTACACAGAATTCGGGATGGTC
TC
TAGTAGCATGAAAAGCTTTGATGACATCAAAGACTTCCAAAAGCAACTCATGCAATCCTTTATCGATACCGCTCTTGAAGCTGAGATGGAAGACCATCTT
GGCTATCCTAAGCATGAAAAGGCGGATAAGCCAAACAAGCGCAATGGGCACACTAAAAAGACCGTCCGCAGTGACACAGGCGATCTTGAGATCTCCACTC
CAAGAGACCGCGGTGGCAGCTTTGAGCCTATATTAGTGAGCAAGCATCAAACTCGCATCACTGGCCTTGATGATAAAATCATATTCTTTTACGCCAAGGG
CCAAACCACCACTGAGATCGTCGAAACCATTAAAGAGCTTTACGATGTCGACATATCAAGCACACTGGTTTCAAGAGTTACTGACAACATCTTAGAGGAC
ATCACCGCTTGGCAGAACCGGCCATTGAGCAGTGTTTATCCTATTGTCTATTTGGACTGCATTGTCGTGAAGATACGTCAAGACAAGCAGATCATCAACA
AAGCCATTTACTTAGCCTTAGGCGTTAACCTTAACGGTAAAAAAGAGCTGCTTGGCATGTGGCTACCAGAAAATGAGGGCGCTAAGTTCTGGCTGGGCGT
TCTCACTGAACTACAAAATCGCGGGGTGCAAGATATTCTCATTGCCTGTGTCGATGGCCTAAAAGGCTTTCCTGATGCCATTAACACCGTTTATCCCAAT
GCTCAGGTTCAGCTGTGTATCGTACACATGGTGCGCTATTCGATGAAGTTTGTACCGTGGACGGATAAGAAGGCCGTAGCGGCTGATTTAAAGGCCATCT
ATGGTGCTGATACGCTTGAGGTAGCAGAGGCCAATCTTGAGCACTTTGATGAGACTTGGGGCGATAAGTATCCGCATGTGGTCAGGTCTTGGCGCAATAA
CTGGGAGGGCTTAACGGTGTTCTTCGAGTATCCTAAAGACATCAGAAAAGCGATTTATACTACTAATGCGATAGAGTCGCTAAACAGCGTCATTCGTACG
GCGGTGAATAAGCGTAAGGTGTTCCCGTCTGATCAGGCGGCATTCAAGGTGGTTTATCTGGCAACCCAGCAGGCATCCAAAAAGTGGTCGATGCCCATCC
GTAACTGGACGTCTGCTTTAAATCGCTTTATGATTATGTTTGATGACCGTATTAGTAAGCATTTAATCTAAATGGCAGTTACACAGAATTCGGGATGGTC
TC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1215 bp | 404 aa | 57 | 1271 | + | No |
Chemistry : DDE
ORF sequence :
MTTQSDIKKLAEQMASSMKSFDDIKDFQKQLMQSFIDTALEAEMEDHLGYPKHEKADKPNKRNGHTKKTVRSDTGDLEISTPRDRGGSFEPILVSKHQTR
ITGLDDKIIFFYAKGQTTTEIVETIKELYDVDISSTLVSRVTDNILEDITAWQNRPLSSVYPIVYLDCIVVKIRQDKQIINKAIYLALGVNLNGKKELLG
MWLPENEGAKFWLGVLTELQNRGVQDILIACVDGLKGFPDAINTVYPNAQVQLCIVHMVRYSMKFVPWTDKKAVAADLKAIYGADTLEVAEANLEHFDET
WGDKYPHVVRSWRNNWEGLTVFFEYPKDIRKAIYTTNAIESLNSVIRTAVNKRKVFPSDQAAFKVVYLATQQASKKWSMPIRNWTSALNRFMIMFDDRIS
KHLI
ITGLDDKIIFFYAKGQTTTEIVETIKELYDVDISSTLVSRVTDNILEDITAWQNRPLSSVYPIVYLDCIVVKIRQDKQIINKAIYLALGVNLNGKKELLG
MWLPENEGAKFWLGVLTELQNRGVQDILIACVDGLKGFPDAINTVYPNAQVQLCIVHMVRYSMKFVPWTDKKAVAADLKAIYGADTLEVAEANLEHFDET
WGDKYPHVVRSWRNNWEGLTVFFEYPKDIRKAIYTTNAIESLNSVIRTAVNKRKVFPSDQAAFKVVYLATQQASKKWSMPIRNWTSALNRFMIMFDDRIS
KHLI
Blast result :
Comments
ISPssp4 is 77% aa similar to ISAba42.
References