ISPssp4

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Psychrobacter sp.
Psychrobacter sp. DAB_AL32B
Psychrobacter sp. DAB_AL32B pP32BP2
DNA section
IS Length : 1302 bp

Ends


IR Length : 19/28

IRL : GGGGGTTTCCTAAAAACTGTGTAACTGCTTATAATCCACTAACCGGAGAA
IRR : GAGACCATCCCGAATTCTGTGTAACTGCCATTTAGATTAAATGCTTACTA

Insertion site


Left flankDirect repeatRight flankDR Length
GTGGGAATTATAGATAGTAAACCGTCTTAAAAAAGATGCTTTACCATCTACAATTCTC8

DNA sequence

GGGGGTTTCCTAAAAACTGTGTAACTGCTTATAATCCACTAACCGGAGAATAAGCAATGACTACTCAATCTGACATTAAAAAACTGGCCGAGCAAATGGC
TAGTAGCATGAAAAGCTTTGATGACATCAAAGACTTCCAAAAGCAACTCATGCAATCCTTTATCGATACCGCTCTTGAAGCTGAGATGGAAGACCATCTT
GGCTATCCTAAGCATGAAAAGGCGGATAAGCCAAACAAGCGCAATGGGCACACTAAAAAGACCGTCCGCAGTGACACAGGCGATCTTGAGATCTCCACTC
CAAGAGACCGCGGTGGCAGCTTTGAGCCTATATTAGTGAGCAAGCATCAAACTCGCATCACTGGCCTTGATGATAAAATCATATTCTTTTACGCCAAGGG
CCAAACCACCACTGAGATCGTCGAAACCATTAAAGAGCTTTACGATGTCGACATATCAAGCACACTGGTTTCAAGAGTTACTGACAACATCTTAGAGGAC
ATCACCGCTTGGCAGAACCGGCCATTGAGCAGTGTTTATCCTATTGTCTATTTGGACTGCATTGTCGTGAAGATACGTCAAGACAAGCAGATCATCAACA
AAGCCATTTACTTAGCCTTAGGCGTTAACCTTAACGGTAAAAAAGAGCTGCTTGGCATGTGGCTACCAGAAAATGAGGGCGCTAAGTTCTGGCTGGGCGT
TCTCACTGAACTACAAAATCGCGGGGTGCAAGATATTCTCATTGCCTGTGTCGATGGCCTAAAAGGCTTTCCTGATGCCATTAACACCGTTTATCCCAAT
GCTCAGGTTCAGCTGTGTATCGTACACATGGTGCGCTATTCGATGAAGTTTGTACCGTGGACGGATAAGAAGGCCGTAGCGGCTGATTTAAAGGCCATCT
ATGGTGCTGATACGCTTGAGGTAGCAGAGGCCAATCTTGAGCACTTTGATGAGACTTGGGGCGATAAGTATCCGCATGTGGTCAGGTCTTGGCGCAATAA
CTGGGAGGGCTTAACGGTGTTCTTCGAGTATCCTAAAGACATCAGAAAAGCGATTTATACTACTAATGCGATAGAGTCGCTAAACAGCGTCATTCGTACG
GCGGTGAATAAGCGTAAGGTGTTCCCGTCTGATCAGGCGGCATTCAAGGTGGTTTATCTGGCAACCCAGCAGGCATCCAAAAAGTGGTCGATGCCCATCC
GTAACTGGACGTCTGCTTTAAATCGCTTTATGATTATGTTTGATGACCGTATTAGTAAGCATTTAATCTAAATGGCAGTTACACAGAATTCGGGATGGTC
TC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1215 bp404 aa571271+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTTQSDIKKLAEQMASSMKSFDDIKDFQKQLMQSFIDTALEAEMEDHLGYPKHEKADKPNKRNGHTKKTVRSDTGDLEISTPRDRGGSFEPILVSKHQTR
ITGLDDKIIFFYAKGQTTTEIVETIKELYDVDISSTLVSRVTDNILEDITAWQNRPLSSVYPIVYLDCIVVKIRQDKQIINKAIYLALGVNLNGKKELLG
MWLPENEGAKFWLGVLTELQNRGVQDILIACVDGLKGFPDAINTVYPNAQVQLCIVHMVRYSMKFVPWTDKKAVAADLKAIYGADTLEVAEANLEHFDET
WGDKYPHVVRSWRNNWEGLTVFFEYPKDIRKAIYTTNAIESLNSVIRTAVNKRKVFPSDQAAFKVVYLATQQASKKWSMPIRNWTSALNRFMIMFDDRIS
KHLI

 

Blast result :
Comments
ISPssp4 is 77% aa similar to ISAba42.
References