ISBdi5
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Bradyrhizobium diazoefficiens | Bradyrhizobium diazoefficiens SEMIA 5080 Bradyrhizobium diazoefficiens Bradyrhizobium diazoefficiens USDA 122 Bradyrhizobium ottawaense OO99 |
DNA section
IS Length : 1240 bp
Ends
IR Length : 19/28
IRL : TGTAGAAGTTTCGACTTAATCTGACGGCAAGGTTTGAACTGGCAGGGAAT
IRR : TGTAAAAGAAGGGACTTGAGCTGACAGCGAGTGCTTTGTCGCGGCAGGTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTCATGGTC | AAGTTTTCCG | 0 |
DNA sequence
TGTAGAAGTTTCGACTTAATCTGACGGCAAGGTTTGAACTGGCAGGGAATGGAGCTGCGGGCGAGCAGGAGCGCTCACCCAAAGGGCGCTCCCGCGCAGC
CCGCGGCGTCTCACAGGGAGACGTTACCATGACCCAGGAACAGAAGTCATTCGCGCGAAAGTCGGCATGCTGGAATTGGCCAAGCAGCTCGGCAACGTCA
GCCAGGCTTGCCGGATGATGGGCTATAGCCGCGACAGCTTCTACCGGTTCAAGGAACTGTACGACAAGGGCGGCGAGCTGGCGCTGATTGAGATCAGCCG
CAAGAAACCGGTCCTGAAGAACCGTGTCGCGCCGGAGGTCGAGGCAGCCGTCGTTGAGCTGGGGATCGACCAGCCGGCCTGGGGTCAGGTGCGGGTCAGC
AATGAGCTCAGGAGCCGCGGCCTGTCGATCTCCCCGTTCGGCGTGCGGGCGGTGTGGCTGCGTCACGACCTCGCCAACGTCAAGAAGCGGCTGACGGCGC
TGGAGGCCAAGATGGCCCAGGACGGCCTGGTGCTGACCGAGGCCCAGCTCGTTGCGTTGGAAAGGGCCAAGTCCGAGAAGGAGGCGCACGGCGAGTTCGA
GAGCGAGTGCCCCGGCTATTGCGGTGCGCAGGACACCTTCTATGTCGGCAACATGAAGGGGGTCGGGCGGATCTATCAGCAGACCTTCATTGACACCTAC
AGTAAGGTGGCGTTCGCCAAGCTGTATGATCGCAAGACGCCGATCACGGCGGCCGAACTGTTGAATGATCGCGTGGTGCCGTTTTTCGATGCGCGGGGCA
TCCCGCTAAACCGGATCCTGACCGACCGCGGCACCGAGTATTGCGGCAATCCGGAGCATCACGAATATGAGCTCTACCTCGCCGTCGAAGACATCGATCA
CACCCGCACCAAGACGAGGAGCCCACAGACCAACGGCATTGTCGAGCGCTTCCACCGCACCGTGCTCGAGGAGTTCTATCGCGTCGTGTTCCGCAAGAAG
ATCTATCCGAGCATCACTGCCTTGCAGAGCGATCTCGATGAGTGGATCGCTGCCTACAATGAGGTGCGCCCACATCAGGGGCGCTGGTGCTACGGCAAGA
CGCCGATGCAAACTTTGCGTGACGCAAGTGCTCTGTCGAGAGAAAAATTGTTGCCGGCTGCGTGGGGTCGCACATGAAACCTTTGTCGGACACCTGCCGC
GACAAAGCACTCGCTGTCAGCTCAAGTCCCTTCTTTTACA
CCGCGGCGTCTCACAGGGAGACGTTACCATGACCCAGGAACAGAAGTCATTCGCGCGAAAGTCGGCATGCTGGAATTGGCCAAGCAGCTCGGCAACGTCA
GCCAGGCTTGCCGGATGATGGGCTATAGCCGCGACAGCTTCTACCGGTTCAAGGAACTGTACGACAAGGGCGGCGAGCTGGCGCTGATTGAGATCAGCCG
CAAGAAACCGGTCCTGAAGAACCGTGTCGCGCCGGAGGTCGAGGCAGCCGTCGTTGAGCTGGGGATCGACCAGCCGGCCTGGGGTCAGGTGCGGGTCAGC
AATGAGCTCAGGAGCCGCGGCCTGTCGATCTCCCCGTTCGGCGTGCGGGCGGTGTGGCTGCGTCACGACCTCGCCAACGTCAAGAAGCGGCTGACGGCGC
TGGAGGCCAAGATGGCCCAGGACGGCCTGGTGCTGACCGAGGCCCAGCTCGTTGCGTTGGAAAGGGCCAAGTCCGAGAAGGAGGCGCACGGCGAGTTCGA
GAGCGAGTGCCCCGGCTATTGCGGTGCGCAGGACACCTTCTATGTCGGCAACATGAAGGGGGTCGGGCGGATCTATCAGCAGACCTTCATTGACACCTAC
AGTAAGGTGGCGTTCGCCAAGCTGTATGATCGCAAGACGCCGATCACGGCGGCCGAACTGTTGAATGATCGCGTGGTGCCGTTTTTCGATGCGCGGGGCA
TCCCGCTAAACCGGATCCTGACCGACCGCGGCACCGAGTATTGCGGCAATCCGGAGCATCACGAATATGAGCTCTACCTCGCCGTCGAAGACATCGATCA
CACCCGCACCAAGACGAGGAGCCCACAGACCAACGGCATTGTCGAGCGCTTCCACCGCACCGTGCTCGAGGAGTTCTATCGCGTCGTGTTCCGCAAGAAG
ATCTATCCGAGCATCACTGCCTTGCAGAGCGATCTCGATGAGTGGATCGCTGCCTACAATGAGGTGCGCCCACATCAGGGGCGCTGGTGCTACGGCAAGA
CGCCGATGCAAACTTTGCGTGACGCAAGTGCTCTGTCGAGAGAAAAATTGTTGCCGGCTGCGTGGGGTCGCACATGAAACCTTTGTCGGACACCTGCCGC
GACAAAGCACTCGCTGTCAGCTCAAGTCCCTTCTTTTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1011 bp | 336 aa | 167 | 1177 | + | No |
Chemistry : DDE
ORF sequence :
MLELAKQLGNVSQACRMMGYSRDSFYRFKELYDKGGELALIEISRKKPVLKNRVAPEVEAAVVELGIDQPAWGQVRVSNELRSRGLSISPFGVRAVWLRH
DLANVKKRLTALEAKMAQDGLVLTEAQLVALERAKSEKEAHGEFESECPGYCGAQDTFYVGNMKGVGRIYQQTFIDTYSKVAFAKLYDRKTPITAAELLN
DRVVPFFDARGIPLNRILTDRGTEYCGNPEHHEYELYLAVEDIDHTRTKTRSPQTNGIVERFHRTVLEEFYRVVFRKKIYPSITALQSDLDEWIAAYNEV
RPHQGRWCYGKTPMQTLRDASALSREKLLPAAWGRT
DLANVKKRLTALEAKMAQDGLVLTEAQLVALERAKSEKEAHGEFESECPGYCGAQDTFYVGNMKGVGRIYQQTFIDTYSKVAFAKLYDRKTPITAAELLN
DRVVPFFDARGIPLNRILTDRGTEYCGNPEHHEYELYLAVEDIDHTRTKTRSPQTNGIVERFHRTVLEEFYRVVFRKKIYPSITALQSDLDEWIAAYNEV
RPHQGRWCYGKTPMQTLRDASALSREKLLPAAWGRT
Blast result :
Comments
ISBdi5 is 88% aa similar to ISBmu27.
References
1] Gesiele Carvalho (2018) Direct submission.