ISBdi5

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens SEMIA 5080
Bradyrhizobium diazoefficiens
Bradyrhizobium diazoefficiens USDA 122
Bradyrhizobium ottawaense OO99
DNA section
IS Length : 1240 bp

Ends


IR Length : 19/28

IRL : TGTAGAAGTTTCGACTTAATCTGACGGCAAGGTTTGAACTGGCAGGGAAT
IRR : TGTAAAAGAAGGGACTTGAGCTGACAGCGAGTGCTTTGTCGCGGCAGGTG

Insertion site


Left flankDirect repeatRight flankDR Length
TGTCATGGTCAAGTTTTCCG0

DNA sequence

TGTAGAAGTTTCGACTTAATCTGACGGCAAGGTTTGAACTGGCAGGGAATGGAGCTGCGGGCGAGCAGGAGCGCTCACCCAAAGGGCGCTCCCGCGCAGC
CCGCGGCGTCTCACAGGGAGACGTTACCATGACCCAGGAACAGAAGTCATTCGCGCGAAAGTCGGCATGCTGGAATTGGCCAAGCAGCTCGGCAACGTCA
GCCAGGCTTGCCGGATGATGGGCTATAGCCGCGACAGCTTCTACCGGTTCAAGGAACTGTACGACAAGGGCGGCGAGCTGGCGCTGATTGAGATCAGCCG
CAAGAAACCGGTCCTGAAGAACCGTGTCGCGCCGGAGGTCGAGGCAGCCGTCGTTGAGCTGGGGATCGACCAGCCGGCCTGGGGTCAGGTGCGGGTCAGC
AATGAGCTCAGGAGCCGCGGCCTGTCGATCTCCCCGTTCGGCGTGCGGGCGGTGTGGCTGCGTCACGACCTCGCCAACGTCAAGAAGCGGCTGACGGCGC
TGGAGGCCAAGATGGCCCAGGACGGCCTGGTGCTGACCGAGGCCCAGCTCGTTGCGTTGGAAAGGGCCAAGTCCGAGAAGGAGGCGCACGGCGAGTTCGA
GAGCGAGTGCCCCGGCTATTGCGGTGCGCAGGACACCTTCTATGTCGGCAACATGAAGGGGGTCGGGCGGATCTATCAGCAGACCTTCATTGACACCTAC
AGTAAGGTGGCGTTCGCCAAGCTGTATGATCGCAAGACGCCGATCACGGCGGCCGAACTGTTGAATGATCGCGTGGTGCCGTTTTTCGATGCGCGGGGCA
TCCCGCTAAACCGGATCCTGACCGACCGCGGCACCGAGTATTGCGGCAATCCGGAGCATCACGAATATGAGCTCTACCTCGCCGTCGAAGACATCGATCA
CACCCGCACCAAGACGAGGAGCCCACAGACCAACGGCATTGTCGAGCGCTTCCACCGCACCGTGCTCGAGGAGTTCTATCGCGTCGTGTTCCGCAAGAAG
ATCTATCCGAGCATCACTGCCTTGCAGAGCGATCTCGATGAGTGGATCGCTGCCTACAATGAGGTGCGCCCACATCAGGGGCGCTGGTGCTACGGCAAGA
CGCCGATGCAAACTTTGCGTGACGCAAGTGCTCTGTCGAGAGAAAAATTGTTGCCGGCTGCGTGGGGTCGCACATGAAACCTTTGTCGGACACCTGCCGC
GACAAAGCACTCGCTGTCAGCTCAAGTCCCTTCTTTTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1011 bp336 aa1671177+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLELAKQLGNVSQACRMMGYSRDSFYRFKELYDKGGELALIEISRKKPVLKNRVAPEVEAAVVELGIDQPAWGQVRVSNELRSRGLSISPFGVRAVWLRH
DLANVKKRLTALEAKMAQDGLVLTEAQLVALERAKSEKEAHGEFESECPGYCGAQDTFYVGNMKGVGRIYQQTFIDTYSKVAFAKLYDRKTPITAAELLN
DRVVPFFDARGIPLNRILTDRGTEYCGNPEHHEYELYLAVEDIDHTRTKTRSPQTNGIVERFHRTVLEEFYRVVFRKKIYPSITALQSDLDEWIAAYNEV
RPHQGRWCYGKTPMQTLRDASALSREKLLPAAWGRT

 

Blast result :
Comments
ISBdi5 is 88% aa similar to ISBmu27.
References
1] Gesiele Carvalho (2018) Direct submission.