ISTeha5

  • Family IS4
  • Group IS4Sa
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LC430897 Y Tetragenococcus halophilus
Tetragenococcus halophilus NBRC 12172
Tetragenococcus halophilus
Tetragenococcus halophilus KUD23
Tetragenococcus halophilus MJ4
DNA section
IS Length : 1385 bp

Ends


IR Length : 15/17

IRL : CACTAGTGGTGCATGAAACATTTTAAATTAGCTCTTTATGTTTCACACTA
IRR : CACTAGTGGTGCATTAATATGATCAGAATATTCAGATTTTAACTTTTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
AACATTAATTGGCTTACTCATAACTTAAG9
GTAAATTAAACAGATATTATATTTTTAATATATTTTTCTT0

DNA sequence

CACTAGTGGTGCATGAAACATTTTAAATTAGCTCTTTATGTTTCACACTATTTTCATTCATAAAAAAATCCTTTATACTGAGCTTGGATGACTTATCCAA
GACCAATACAAAGGAACTTAATATGGATAAGTATAAAACAATTTCAGCTTTTAATAAATGGTTTTCGAACATAAATTTCAAAAAATTACCTTTTTCTATT
CGTGAGAAAATTTCTCAAGCCGACAAGTATCATAAAAAATTTGCTTTTGAACACTTTTTGAAGGTGTTTCTCTATGGCATCGATCATGAGTGTGAAAGTT
TACGTGAAATGGATACGGCATTTGTTTCCCCTGATCTACAACAGACCATGGCGTTAGATGCCATCAGCCATTCGCAGCTTTCCCGTGAGCTCGCCCAGAT
GGATGACGAAATTTTGTGGGCGATTTTCGCACAGTTACTGGAAAAAGCACGGTCAAAAACACCGGTGACTAAACGAAATGCGCTCTATCTCGTGGATTCT
TCTACCTTTCCGTTAAATACCACTCGATATCCTTGGGCGGACTTTCGCTCAACCAAAGCGGGGATCAAGCTTCACTTAAAACTTTGTTTTATGGATAAAG
AACACTTGTATCCGGATCAGTTTGAAGTCACGAATGCGGTTGAACATGATGACAATCACTTAGAAGTTTTTGTCAATCAACCGGAAGCGACCTATATCTT
TGACCGTGGTTATATTGATTACGAGCGACTGGATGAAATGGAAGCCGATGGCTATTTTTTCGTCACAAGAGTGAAGAAAAACACCAAAATCCATGTCAGA
GAAACTTATGATACTTCTCAGAGTAAAAACATTTTGCGTGACCAAATGGTGGTGTTAGGTACGCAGGTTTATTTAACCTCCCCGTTTCGCTTAGTGACGA
TTCAGGATGAAAAGGGAAAACAATTACGTTTTGTCACTAACCGTTTTGATGTGACCGCCCAAGAAGTGGCCGACATGTACAAAGCTCGTTGGCAAATTGA
ACTATTTTTTAAGCACATCAAGCAACATATGACGATAAAAAAGCTATTTTCCCACAGTGAAAAAGGGGTAAGCAATCAAATCATTCTCGCCATGATTGCC
AGTCTACTGACGTATTTACTCAAAGTGGAGACAGGAAGTAAGAAATCTCCTTTTCAAATCAAGCGTCTATTGAAACACTTGCTTTTTCAACCTTTTGAAG
AATTATGGGTGTTGCTCGTTCCTACGTGACGAAATAGCATTTGTCGTTGTTGCAATAGTATTCAGATAAATAATGAAAATTTTTTTCTGGAAAAGTCATC
CTTGCGCAAGCATTTGATTTTTTTGTCATTTTTTAGAAAAAAGTTAAAATCTGAATATTCTGATCATATTAATGCACCACTAGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1107 bp368 aa1231229+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDKYKTISAFNKWFSNINFKKLPFSIREKISQADKYHKKFAFEHFLKVFLYGIDHECESLREMDTAFVSPDLQQTMALDAISHSQLSRELAQMDDEILWA
IFAQLLEKARSKTPVTKRNALYLVDSSTFPLNTTRYPWADFRSTKAGIKLHLKLCFMDKEHLYPDQFEVTNAVEHDDNHLEVFVNQPEATYIFDRGYIDY
ERLDEMEADGYFFVTRVKKNTKIHVRETYDTSQSKNILRDQMVVLGTQVYLTSPFRLVTIQDEKGKQLRFVTNRFDVTAQEVADMYKARWQIELFFKHIK
QHMTIKKLFSHSEKGVSNQIILAMIASLLTYLLKVETGSKKSPFQIKRLLKHLLFQPFEELWVLLVPT

 

Blast result :
Comments
ISTeha5 is 64% aa similar to IS641.
References
1] Takura Wakinaka (2018) Direct submission.
2] Wakinaka, T., & Watanabe, J. (2019) Appl. Environ. Microbiol 2;85(10)