ISSph1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Sphingopyxis sp. | Sphingopyxis sp. SE2 |
DNA section
IS Length : 1048 bp
Ends
IR Length : 16/17
IRL : GGCTTTGTTGCATAACGAACATACTGGATTCCCCTGAGGAATCGTTTGTC
IRR : GGCTTTGTTGCATAAAGCGTGATGAGCGCAAACCTATGATTACTTGTGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTTTGTTGCATAACGAACATACTGGATTCCCCTGAGGAATCGTTTGTC | GCGTCGACG | ATCACAAGTAATCATAGGTTTGCGCTCATCACGCTTTATGCAACAAAGCC | 9 |
DNA sequence
GGCTTTGTTGCATAACGAACATACTGGATTCCCCTGAGGAATCGTTTGTCATAGATGGGCGGGATGCCCAGACCGACACCGCCGAAGTATCGCACTACCA
ATTGGCCCGAGTATAATGCGGCGCTCCGGCGACGAGGCTCGCTGGATGTTTGGTTTGACCCTGGGATGGATTGGTTTGCACCGCGCGACGGGCGGGCTGG
TCGGCCACTGCGGTTTTCGGACCGGGCGATTGAGTTTTGCCTGACCTTGAAAGGGCTGTTTCAACTTCCGTTGCGGCAAGTGACCGGTCTGACCCAGAGC
CTGCTCAAGCTGGCGGGGCTGGACTGGCCGGCACCGGATTACACGACGCTGTGTCGGCGCCAGAAGGGTTTGTCGGTCGATCTGGGCGGGAGGCCAAGTG
CAGACGGTCTGCATCTGCTGGTGGACAGCACGGGCATTAAGATGATGGGTGAAGGCGAATGGAAAACAAGGAAACACGGCGCTTCCTATCGCCGCCAGTG
GCGCAAGGTGCATATCGGCATTGACGCGGAAACGCAGGATATTCGGGCGCTTGAGATGACGACCAACGCCAATGGAGATGGCCAGACCCTTCCTGACCTG
CTGGGGCAAATCCCCGAGGATGAGACGATCCTCAGTGTTGGTGGCGATGGTGCCTATGATACAAGGAATTGCCACGCCGCCATTGCCGGTCGCGGGGCTG
AGCCGGTCATCCCGGTTCGCCGCAACGGCAAGGCTTGGACCAGAGACGGACCCGGCGTCGATGCCCGCAATGAAACCCTGCGCGCGATGAAACAGCTCGG
CAGGGCAATCTGGAAAAAGTGGAGTGGCTATCATCGTCGCAGCCTCGTCGAAACCAAAATGCACTGTTTCAAGCTACTCAGTCAGCGTCTCGCCGCGCGC
ACTTTTGATCGCCAGACGATCGAGCTCAAAGTCCGTGCCGCAATCCTCAATCGCTTCTCGCAAATCGGAATGCCCAACACCATCCGTGTCGCATAATAAT
CACAAGTAATCATAGGTTTGCGCTCATCACGCTTTATGCAACAAAGCC
ATTGGCCCGAGTATAATGCGGCGCTCCGGCGACGAGGCTCGCTGGATGTTTGGTTTGACCCTGGGATGGATTGGTTTGCACCGCGCGACGGGCGGGCTGG
TCGGCCACTGCGGTTTTCGGACCGGGCGATTGAGTTTTGCCTGACCTTGAAAGGGCTGTTTCAACTTCCGTTGCGGCAAGTGACCGGTCTGACCCAGAGC
CTGCTCAAGCTGGCGGGGCTGGACTGGCCGGCACCGGATTACACGACGCTGTGTCGGCGCCAGAAGGGTTTGTCGGTCGATCTGGGCGGGAGGCCAAGTG
CAGACGGTCTGCATCTGCTGGTGGACAGCACGGGCATTAAGATGATGGGTGAAGGCGAATGGAAAACAAGGAAACACGGCGCTTCCTATCGCCGCCAGTG
GCGCAAGGTGCATATCGGCATTGACGCGGAAACGCAGGATATTCGGGCGCTTGAGATGACGACCAACGCCAATGGAGATGGCCAGACCCTTCCTGACCTG
CTGGGGCAAATCCCCGAGGATGAGACGATCCTCAGTGTTGGTGGCGATGGTGCCTATGATACAAGGAATTGCCACGCCGCCATTGCCGGTCGCGGGGCTG
AGCCGGTCATCCCGGTTCGCCGCAACGGCAAGGCTTGGACCAGAGACGGACCCGGCGTCGATGCCCGCAATGAAACCCTGCGCGCGATGAAACAGCTCGG
CAGGGCAATCTGGAAAAAGTGGAGTGGCTATCATCGTCGCAGCCTCGTCGAAACCAAAATGCACTGTTTCAAGCTACTCAGTCAGCGTCTCGCCGCGCGC
ACTTTTGATCGCCAGACGATCGAGCTCAAAGTCCGTGCCGCAATCCTCAATCGCTTCTCGCAAATCGGAATGCCCAACACCATCCGTGTCGCATAATAAT
CACAAGTAATCATAGGTTTGCGCTCATCACGCTTTATGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 64 | 996 | + | No |
Chemistry : DDE
ORF sequence :
MPRPTPPKYRTTNWPEYNAALRRRGSLDVWFDPGMDWFAPRDGRAGRPLRFSDRAIEFCLTLKGLFQLPLRQVTGLTQSLLKLAGLDWPAPDYTTLCRRQ
KGLSVDLGGRPSADGLHLLVDSTGIKMMGEGEWKTRKHGASYRRQWRKVHIGIDAETQDIRALEMTTNANGDGQTLPDLLGQIPEDETILSVGGDGAYDT
RNCHAAIAGRGAEPVIPVRRNGKAWTRDGPGVDARNETLRAMKQLGRAIWKKWSGYHRRSLVETKMHCFKLLSQRLAARTFDRQTIELKVRAAILNRFSQ
IGMPNTIRVA
KGLSVDLGGRPSADGLHLLVDSTGIKMMGEGEWKTRKHGASYRRQWRKVHIGIDAETQDIRALEMTTNANGDGQTLPDLLGQIPEDETILSVGGDGAYDT
RNCHAAIAGRGAEPVIPVRRNGKAWTRDGPGVDARNETLRAMKQLGRAIWKKWSGYHRRSLVETKMHCFKLLSQRLAARTFDRQTIELKVRAAILNRFSQ
IGMPNTIRVA
Blast result :
Comments
ISSph1 is 77% aa similar to ISJsp2.
References
1] Labbate Maurizio (2018) Direct submission.