ISSph1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Sphingopyxis sp.
Sphingopyxis sp. SE2
DNA section
IS Length : 1048 bp

Ends


IR Length : 16/17

IRL : GGCTTTGTTGCATAACGAACATACTGGATTCCCCTGAGGAATCGTTTGTC
IRR : GGCTTTGTTGCATAAAGCGTGATGAGCGCAAACCTATGATTACTTGTGAT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCTTTGTTGCATAACGAACATACTGGATTCCCCTGAGGAATCGTTTGTCGCGTCGACGATCACAAGTAATCATAGGTTTGCGCTCATCACGCTTTATGCAACAAAGCC9

DNA sequence

GGCTTTGTTGCATAACGAACATACTGGATTCCCCTGAGGAATCGTTTGTCATAGATGGGCGGGATGCCCAGACCGACACCGCCGAAGTATCGCACTACCA
ATTGGCCCGAGTATAATGCGGCGCTCCGGCGACGAGGCTCGCTGGATGTTTGGTTTGACCCTGGGATGGATTGGTTTGCACCGCGCGACGGGCGGGCTGG
TCGGCCACTGCGGTTTTCGGACCGGGCGATTGAGTTTTGCCTGACCTTGAAAGGGCTGTTTCAACTTCCGTTGCGGCAAGTGACCGGTCTGACCCAGAGC
CTGCTCAAGCTGGCGGGGCTGGACTGGCCGGCACCGGATTACACGACGCTGTGTCGGCGCCAGAAGGGTTTGTCGGTCGATCTGGGCGGGAGGCCAAGTG
CAGACGGTCTGCATCTGCTGGTGGACAGCACGGGCATTAAGATGATGGGTGAAGGCGAATGGAAAACAAGGAAACACGGCGCTTCCTATCGCCGCCAGTG
GCGCAAGGTGCATATCGGCATTGACGCGGAAACGCAGGATATTCGGGCGCTTGAGATGACGACCAACGCCAATGGAGATGGCCAGACCCTTCCTGACCTG
CTGGGGCAAATCCCCGAGGATGAGACGATCCTCAGTGTTGGTGGCGATGGTGCCTATGATACAAGGAATTGCCACGCCGCCATTGCCGGTCGCGGGGCTG
AGCCGGTCATCCCGGTTCGCCGCAACGGCAAGGCTTGGACCAGAGACGGACCCGGCGTCGATGCCCGCAATGAAACCCTGCGCGCGATGAAACAGCTCGG
CAGGGCAATCTGGAAAAAGTGGAGTGGCTATCATCGTCGCAGCCTCGTCGAAACCAAAATGCACTGTTTCAAGCTACTCAGTCAGCGTCTCGCCGCGCGC
ACTTTTGATCGCCAGACGATCGAGCTCAAAGTCCGTGCCGCAATCCTCAATCGCTTCTCGCAAATCGGAATGCCCAACACCATCCGTGTCGCATAATAAT
CACAAGTAATCATAGGTTTGCGCTCATCACGCTTTATGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa64996+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRPTPPKYRTTNWPEYNAALRRRGSLDVWFDPGMDWFAPRDGRAGRPLRFSDRAIEFCLTLKGLFQLPLRQVTGLTQSLLKLAGLDWPAPDYTTLCRRQ
KGLSVDLGGRPSADGLHLLVDSTGIKMMGEGEWKTRKHGASYRRQWRKVHIGIDAETQDIRALEMTTNANGDGQTLPDLLGQIPEDETILSVGGDGAYDT
RNCHAAIAGRGAEPVIPVRRNGKAWTRDGPGVDARNETLRAMKQLGRAIWKKWSGYHRRSLVETKMHCFKLLSQRLAARTFDRQTIELKVRAAILNRFSQ
IGMPNTIRVA

 

Blast result :
Comments
ISSph1 is 77% aa similar to ISJsp2.
References
1] Labbate Maurizio (2018) Direct submission.