ISHahy15

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002304 ND Halanaerobium hydrogeniformans
Halanaerobium hydrogeniformans
DNA section
IS Length : 1920 bp

Ends


IR Length : 30/33

IRL : GGTTTGCCCCCAAAAAGCCTAAATAAATTTCATCAATAACCAAATAATAA
IRR : GGTTTGCCCCCAAAAAGACTAAATAAATATCCTTAGAAATAAAATTATCT

Insertion site


Left flankDirect repeatRight flankDR Length
AAATTGATAATTGCATAATATAGAATTA0
TTCATTAAAGATAAACTATTTGAGCAAT0

DNA sequence

GGTTTGCCCCCAAAAAGCCTAAATAAATTTCATCAATAACCAAATAATAACAATTAATTTTTCTTTTATCATCCTAAAATTAATTAGATTAATCCGCCAT
AATCCTTTATATGACAGGCTTTCTTTGATATAATTAACTTAATAAATCATAGAAAGGATGATAGAATGTTTGTTCCCAACAGTCACCAGCAGTTAAGTCT
TTACGACTCATTTAAGGATTTACCTAAATATCTACAGGAATATCTTTTAAATTCCTGGGCCGATACTTTTCAGGAAATTATCTTCCCTGCAATTGATGAA
GAACGCTTTGCTGTACTCTACAGTGATAAAGGTTCAAGACCGAATACTCCTGTTAATATAATTATCAGTTCCCTTGTAATTAAAGAACTTTTTGATCTCA
CTGATGAAAGATTAGTTGCCAATATCCATCTAAGTATGGAATATCAGTATGCTCTTAGATTAACCAGTGAAGAAAGACCGCCTGTCTCTAAAAATACATT
CAGTAATTTTAGAGAACGGGTTACAGATTACTACAAAGAAACAGGTATAGACTTAATTCAGCAGGAAGTTGAATCCCTGGCTGAATTAATTACAGATAAT
CTGGAAATCGAAGGCGATAGAGCTAGAATTGATTCTTTTATGGTTTCTTCTTCCGCCAGAGAATTATCCAGAATAGAACTTGTTTATACTGTTAATGCTA
ACTTCATCAAAATGCTTTCTCAGTCTTTTGAAGATCTAATTCCTGAAGGACTTGAAGTATATTTAAAAGAGTCCCACAGAAATGAAGTCATCTATCGAAC
CAAAAATGATGAAACCAAAAGCAAACTCAAAAAGCTATTAGAAGATGCTAAAACTCTTTATGATTCAGCAGTTACTGCCGGAGGCAGTGTTACTGAAACT
GAAGAATTTATGCTTCTAAAAAGAATGCTCGGAGAACAGACAGATTATGATGACGATGATTTTGATGATCTTGATCCTGATAATATTGAAGCTAAGGACG
GTACAGAATTGGAATCTGATATTCTGCAGAACCCCAGTGATCCTGATGCAACTTTTAGACAGAAATATGAAGCTAATATCGGCTATACAGCCAATGTGCT
GGAAGTTTTTGACGACGATAATTCTGTAATTACAACCTATGATTTTAAGCCTAACATATATTCTGATCAGGACTTTAGTGCTGATACTTTAGAAAAGCTG
AACAGTGAGCATGTGCTAAACTTTAATATTGAGAACCCAATAAAAATCTTTATGGATGGTGCTTATTATACTTATGGCCTTGCTAAAAAGGCTTTAAATC
TCGGTATTAAGTTTATGCCCGGTGAATTAACCGGTAAAAAACCTGCTGCTGACAAAATGACCTATTATCAAAACTTTAATCTTGGTTCTGACTATGAAAA
TGTTTTAAGCTGTGCCAATGATGTAGAACCTGATTATCAGGAGAAAGACCCTGATAAGAATTCATTCTATGCCATCTTTGATAAAGAAAAGTGTGCTGGC
TGCAAACTAAAATCAGAGTGCAGAATAAAAAGCAACAAAAAACATAATTCAGTCAGTTTTACTGAACAACGATATGAAACAGGAAAACTAAGAGAAACAA
TGGGAGAAAAAGAATACATCCAAGAATGTAACCAGAGAGCAGGCGTAGAAGGAATACCTTCTGTTTTCAGACGCAAATATGATGTCGATGATATGCCGGT
CAGGGGTTAAGTATGTCAAAAAATCTGGTTTGGATTCAAAGTTGCAGCAGCAAACTTCAAAAAGTTGCTGAAAGGACTGGAACCATCCACCTCCTGAACC
AGGTAAGTCTTTTTTACACTATATAATTTTATTTTTACTGATAAATGAGAAATTTATTACTCAAGACCTTAGATAATTTTATTTCTAAGGATATTTATTT
AGTCTTTTTGGGGGCAAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1545 bp514 aa1661710+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFVPNSHQQLSLYDSFKDLPKYLQEYLLNSWADTFQEIIFPAIDEERFAVLYSDKGSRPNTPVNIIISSLVIKELFDLTDERLVANIHLSMEYQYALRLT
SEERPPVSKNTFSNFRERVTDYYKETGIDLIQQEVESLAELITDNLEIEGDRARIDSFMVSSSARELSRIELVYTVNANFIKMLSQSFEDLIPEGLEVYL
KESHRNEVIYRTKNDETKSKLKKLLEDAKTLYDSAVTAGGSVTETEEFMLLKRMLGEQTDYDDDDFDDLDPDNIEAKDGTELESDILQNPSDPDATFRQK
YEANIGYTANVLEVFDDDNSVITTYDFKPNIYSDQDFSADTLEKLNSEHVLNFNIENPIKIFMDGAYYTYGLAKKALNLGIKFMPGELTGKKPAADKMTY
YQNFNLGSDYENVLSCANDVEPDYQEKDPDKNSFYAIFDKEKCAGCKLKSECRIKSNKKHNSVSFTEQRYETGKLRETMGEKEYIQECNQRAGVEGIPSV
FRRKYDVDDMPVRG

 

Blast result :
Comments
ISHahy15 is 39% aa similar to ISAcfe2.
References
1] Bassett K. (2018) Direct Submission.
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683