ISEhe1

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF326767 ND Erwinia herbicola
Erwinia herbicola pv. gypsophilae plasmid pPATH
DNA section
IS Length : 1157 bp

Ends


IR Length : 17/21

IRL : CTAAATAACTGTTCGGAATAGTAGATCATCTGAAGGGAACTCAGTCCGGT
IRR : CTAAATAGCTATTCCTAATAGCGCTTCACTTTAGCCGCCCCATGTTTTCC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CTAAATAACTGTTCGGAATAGTAGATCATCTGAAGGGAACTCAGTCCGGTTTATGCGATCTGATCAATCGCTGAATATCCCAAATCACCAGCCGGACTGA
GCAATGCCGATCATAGCACCCATTTCCAGAACTGAACGACGCCAGATGCAGAAAGCGATCCATAAAACAAAGGACAAAAACCATGCCAGGCGACTCACAG
CCATGCTGATGCTGCATCGGGGCGACACCGTCAGCCATGTTGCCAGAACGCTCTGTTGTGCCCGCTCATCCGTTGGTCGCTGGATTAACTGGTTTACATT
ATTCGGTGCTGAAGGCCTGACGTCCCTGCCTGCGGCCCGCGGAAGGCGCTGGCCCTTTGAGCATATCTGCACATTATTACGTGAGCTGATAAAACACTCT
CCCGGTGATTTTGGTTATCAACGTTCCCGCTGGAGTACCGAACTGCTGACGATAAAAATCCGCAAGGTAACCGGTTGTCCGTTACATACATCAACCATAC
GGCGATGGTTGCCTGCTGCCGGACTTGTATGGCGAAGAGCCGCGCCGACATTGCGCATTCGGGACCCTCATAAAGAAGAAAAAATGACAACAACTAGGCT
GGCGCTGACCAGTTGTAGCCCTGAAAGTCCGGTGTTTTAAGAAGATGAAGTTGATATCCACCTCAATCCCAAGATCGGTGCTGACTGGCAGTTACGCGGG
CAGCAGACGCGTGTCGTCACGCCGGGCCAGAATGAAAAGTACTATCTTGCCGGTGCGCTGCACAGTGGTACATGCAAAGTCAGCTATGTTGGTGGAGCCC
GTAAAGGTTCATCTTTATTTATCAGTCTGTTAAAACATCTGAAAGCGGCGTACAGACGTGCAAAAACGATTACGCTTATTGTCGATAACTACATTATCCA
CAAAAGCCGTGAAACGTTGCGCTGGCTGAAAGCCAACCCAAAGTTCAGGCTGATTTATCAGCCGGTTTACTCGCCGTGGGTCAATCATGTCGAACGGTTG
TGGCTGGCGCTTCATGAGACAATAACCCGAAATCACGAGTGCCGCTCGATGTGGCAACTGTTGAAAAAGGTTCGTCACTTTATGGATACCGTCAGCCATT
CCCCGGTGGAAAACATGGGGCGGCTAAAGTGAAGCGCTATTAGGAATAGCTATTTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa1041132+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPIIAPISRTERRQMQKAIHKTKDKNHARRLTAMLMLHRGDTVSHVARTLCCARSSVGRWINWFTLFGAEGLTSLPAARGRRWPFEHICTLLRELIKHSP
GDFGYQRSRWSTELLTIKIRKVTGCPLHTSTIRRWLPAAGLVWRRAAPTLRIRDPHKEEKMTTTRLALTSCSPESPVF*EDEVDIHLNPKIGADWQLRGQ
QTRVVTPGQNEKYYLAGALHSGTCKVSYVGGARKGSSLFISLLKHLKAAYRRAKTITLIVDNYIIHKSRETLRWLKANPKFRLIYQPVYSPWVNHVERLW
LALHETITRNHECRSMWQLLKKVRHFMDTVSHSPVENMGRLK

 

Blast result :
Comments
ISEhe1 is 85% aa similar to IS630. The transposase share an in frame stop codon at position 179.
References
1] Guo,M., Mor,H., Manulis,S. and Barash,I (2000) Direct submission GenBank.