ISEhe1
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF326767 | ND | Erwinia herbicola | Erwinia herbicola pv. gypsophilae plasmid pPATH |
DNA section
IS Length : 1157 bp
Ends
IR Length : 17/21
IRL : CTAAATAACTGTTCGGAATAGTAGATCATCTGAAGGGAACTCAGTCCGGT
IRR : CTAAATAGCTATTCCTAATAGCGCTTCACTTTAGCCGCCCCATGTTTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CTAAATAACTGTTCGGAATAGTAGATCATCTGAAGGGAACTCAGTCCGGTTTATGCGATCTGATCAATCGCTGAATATCCCAAATCACCAGCCGGACTGA
GCAATGCCGATCATAGCACCCATTTCCAGAACTGAACGACGCCAGATGCAGAAAGCGATCCATAAAACAAAGGACAAAAACCATGCCAGGCGACTCACAG
CCATGCTGATGCTGCATCGGGGCGACACCGTCAGCCATGTTGCCAGAACGCTCTGTTGTGCCCGCTCATCCGTTGGTCGCTGGATTAACTGGTTTACATT
ATTCGGTGCTGAAGGCCTGACGTCCCTGCCTGCGGCCCGCGGAAGGCGCTGGCCCTTTGAGCATATCTGCACATTATTACGTGAGCTGATAAAACACTCT
CCCGGTGATTTTGGTTATCAACGTTCCCGCTGGAGTACCGAACTGCTGACGATAAAAATCCGCAAGGTAACCGGTTGTCCGTTACATACATCAACCATAC
GGCGATGGTTGCCTGCTGCCGGACTTGTATGGCGAAGAGCCGCGCCGACATTGCGCATTCGGGACCCTCATAAAGAAGAAAAAATGACAACAACTAGGCT
GGCGCTGACCAGTTGTAGCCCTGAAAGTCCGGTGTTTTAAGAAGATGAAGTTGATATCCACCTCAATCCCAAGATCGGTGCTGACTGGCAGTTACGCGGG
CAGCAGACGCGTGTCGTCACGCCGGGCCAGAATGAAAAGTACTATCTTGCCGGTGCGCTGCACAGTGGTACATGCAAAGTCAGCTATGTTGGTGGAGCCC
GTAAAGGTTCATCTTTATTTATCAGTCTGTTAAAACATCTGAAAGCGGCGTACAGACGTGCAAAAACGATTACGCTTATTGTCGATAACTACATTATCCA
CAAAAGCCGTGAAACGTTGCGCTGGCTGAAAGCCAACCCAAAGTTCAGGCTGATTTATCAGCCGGTTTACTCGCCGTGGGTCAATCATGTCGAACGGTTG
TGGCTGGCGCTTCATGAGACAATAACCCGAAATCACGAGTGCCGCTCGATGTGGCAACTGTTGAAAAAGGTTCGTCACTTTATGGATACCGTCAGCCATT
CCCCGGTGGAAAACATGGGGCGGCTAAAGTGAAGCGCTATTAGGAATAGCTATTTAG
GCAATGCCGATCATAGCACCCATTTCCAGAACTGAACGACGCCAGATGCAGAAAGCGATCCATAAAACAAAGGACAAAAACCATGCCAGGCGACTCACAG
CCATGCTGATGCTGCATCGGGGCGACACCGTCAGCCATGTTGCCAGAACGCTCTGTTGTGCCCGCTCATCCGTTGGTCGCTGGATTAACTGGTTTACATT
ATTCGGTGCTGAAGGCCTGACGTCCCTGCCTGCGGCCCGCGGAAGGCGCTGGCCCTTTGAGCATATCTGCACATTATTACGTGAGCTGATAAAACACTCT
CCCGGTGATTTTGGTTATCAACGTTCCCGCTGGAGTACCGAACTGCTGACGATAAAAATCCGCAAGGTAACCGGTTGTCCGTTACATACATCAACCATAC
GGCGATGGTTGCCTGCTGCCGGACTTGTATGGCGAAGAGCCGCGCCGACATTGCGCATTCGGGACCCTCATAAAGAAGAAAAAATGACAACAACTAGGCT
GGCGCTGACCAGTTGTAGCCCTGAAAGTCCGGTGTTTTAAGAAGATGAAGTTGATATCCACCTCAATCCCAAGATCGGTGCTGACTGGCAGTTACGCGGG
CAGCAGACGCGTGTCGTCACGCCGGGCCAGAATGAAAAGTACTATCTTGCCGGTGCGCTGCACAGTGGTACATGCAAAGTCAGCTATGTTGGTGGAGCCC
GTAAAGGTTCATCTTTATTTATCAGTCTGTTAAAACATCTGAAAGCGGCGTACAGACGTGCAAAAACGATTACGCTTATTGTCGATAACTACATTATCCA
CAAAAGCCGTGAAACGTTGCGCTGGCTGAAAGCCAACCCAAAGTTCAGGCTGATTTATCAGCCGGTTTACTCGCCGTGGGTCAATCATGTCGAACGGTTG
TGGCTGGCGCTTCATGAGACAATAACCCGAAATCACGAGTGCCGCTCGATGTGGCAACTGTTGAAAAAGGTTCGTCACTTTATGGATACCGTCAGCCATT
CCCCGGTGGAAAACATGGGGCGGCTAAAGTGAAGCGCTATTAGGAATAGCTATTTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 104 | 1132 | + | No |
Chemistry : DDE
ORF sequence :
MPIIAPISRTERRQMQKAIHKTKDKNHARRLTAMLMLHRGDTVSHVARTLCCARSSVGRWINWFTLFGAEGLTSLPAARGRRWPFEHICTLLRELIKHSP
GDFGYQRSRWSTELLTIKIRKVTGCPLHTSTIRRWLPAAGLVWRRAAPTLRIRDPHKEEKMTTTRLALTSCSPESPVF*EDEVDIHLNPKIGADWQLRGQ
QTRVVTPGQNEKYYLAGALHSGTCKVSYVGGARKGSSLFISLLKHLKAAYRRAKTITLIVDNYIIHKSRETLRWLKANPKFRLIYQPVYSPWVNHVERLW
LALHETITRNHECRSMWQLLKKVRHFMDTVSHSPVENMGRLK
GDFGYQRSRWSTELLTIKIRKVTGCPLHTSTIRRWLPAAGLVWRRAAPTLRIRDPHKEEKMTTTRLALTSCSPESPVF*EDEVDIHLNPKIGADWQLRGQ
QTRVVTPGQNEKYYLAGALHSGTCKVSYVGGARKGSSLFISLLKHLKAAYRRAKTITLIVDNYIIHKSRETLRWLKANPKFRLIYQPVYSPWVNHVERLW
LALHETITRNHECRSMWQLLKKVRHFMDTVSHSPVENMGRLK
Blast result :
Comments
ISEhe1 is 85% aa similar to IS630. The transposase share an in frame stop codon at position 179.
References
1] Guo,M., Mor,H., Manulis,S. and Barash,I (2000) Direct submission GenBank.