ISMlu3
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001628 | ND | Micrococcus luteus | Micrococcus luteus NCTC 2665 |
DNA section
IS Length : 1440 bp
Ends
IR Length : 25
IRL : GGTCAAGTCCCGTGGCGTGGTGTCAATTCCCGCGGGGTTCTCGTCGTCGT
IRR : GGTCAAGTCCCGTGGCGTGGTGTCATTCCGTTGTTCCCTGTGGGTGGGTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TATAGAGAAC | CGGCCCCCGG | 0 |
DNA sequence
GGTCAAGTCCCGTGGCGTGGTGTCAATTCCCGCGGGGTTCTCGTCGTCGTAGACGGTGAAGGGCCATCGTGGGATGACCAGTTGTTTCCGCCAAGAAGCA
AGAAGAGTGATCCCACGATGACCCACAACCAGTCTGCCCTGACGACCCTGATCGGCGAAGTCCTCGCCGACCCCGACCTGGCCCACTCGGACGTGTTCCG
GCGAATGCTGCAGGCCGGCCTGCAAGACCTGATCAACGCGGAAGCGACCGTGAAGATCGGCGCGGCCCGTTACGAGCGCACCCCGGAGCGGACCACCCGC
CGTAACGGCACCCGGCCGAAGACCCTCGCGACCCCGGCCGGGGAGGTGGACCTTCAGATCCCGAAGCTGCGGGAGGGGTCGTTCTTCCCCTCGCTGCTGA
GCCCGCGCCGCCGGGTCGACAAGGCGCTCTACGCGGTGATCTGTCAGGCCTGGATCGACGGCGTCTCGACCCGCAAGGTCGATCAGCTGGTGCGGGCGCT
CGGCAACGACACCGGCATCAGCCGGTCGACGGTGTCGCGGATCTGCGGTGAGATCGACGAGGCGGTGCAGGAGTTCCTTTCCCGCCGGATCGATCACACT
TGGTTCCCGTACCTGTTCCTCGACGCGACCTACCTCGACGTCCGCCACCGCGGCCGGGTCGCCTCGCAGGCCCTCGTCGTCGCCACCGGCGTGAGCGGCG
AGGGCAGGCGGGAGATCCTCGGGATGGCGCTCGGTGACGCGGAGACCACCGACTTCTGGACCGAGTTCCTCCGCAGCCTCCGCGACCGCGGCCTGAAGGT
CGCCACCGACGCCGACCCGCTCGGGGTTGCCCTGGTCACGTCCGACGCGCACGCCGGCATCAAGGCCGCGGTGAAAGCGATCCTGCCCGGCTCGGGGTGG
CAACGATGCCGAGTGCATTTCGCGCGCAACGTGACCCAGAAGCTCGGCTCAGCACGCTCCAAGCCGGTCAACGCGCTGATCTCCACGATCTTCGCGCAGA
CCACCCCCGAAGCGGTGATCGCGCAGTATCACCAGGTCACCGACAGTCTGCGCGGCTCGTTCCCCGAGATCACCGCCATGCTCGAGGCCGCCGAGCCGGA
CCTCACCGGGTTCGCCCCGCTGCCCCGGGAGCACTGGCAGAAGGTCTGGTCCAACAACCCCATCGAGCGCCTCAACCGCGAGATCAAACGCCGCGCCGAC
GTCGTCCAGATCTTCCCCGACCGCGACTCCGTGACCCGCCTGATCGGCGCGGTCCTCCAGGAACAACACGAGGAATGGCAATACGGCGAACGCCGCTACT
TCTCCGACATCTCGATGCGCAAACTCGTCCACACCCTGCACGAACACACCGAACCCGCCCGCCCCGAGCTCTACCTCACCGCCTGACCACCACCCACCCA
CAGGGAACAACGGAATGACACCACGCCACGGGACTTGACC
AGAAGAGTGATCCCACGATGACCCACAACCAGTCTGCCCTGACGACCCTGATCGGCGAAGTCCTCGCCGACCCCGACCTGGCCCACTCGGACGTGTTCCG
GCGAATGCTGCAGGCCGGCCTGCAAGACCTGATCAACGCGGAAGCGACCGTGAAGATCGGCGCGGCCCGTTACGAGCGCACCCCGGAGCGGACCACCCGC
CGTAACGGCACCCGGCCGAAGACCCTCGCGACCCCGGCCGGGGAGGTGGACCTTCAGATCCCGAAGCTGCGGGAGGGGTCGTTCTTCCCCTCGCTGCTGA
GCCCGCGCCGCCGGGTCGACAAGGCGCTCTACGCGGTGATCTGTCAGGCCTGGATCGACGGCGTCTCGACCCGCAAGGTCGATCAGCTGGTGCGGGCGCT
CGGCAACGACACCGGCATCAGCCGGTCGACGGTGTCGCGGATCTGCGGTGAGATCGACGAGGCGGTGCAGGAGTTCCTTTCCCGCCGGATCGATCACACT
TGGTTCCCGTACCTGTTCCTCGACGCGACCTACCTCGACGTCCGCCACCGCGGCCGGGTCGCCTCGCAGGCCCTCGTCGTCGCCACCGGCGTGAGCGGCG
AGGGCAGGCGGGAGATCCTCGGGATGGCGCTCGGTGACGCGGAGACCACCGACTTCTGGACCGAGTTCCTCCGCAGCCTCCGCGACCGCGGCCTGAAGGT
CGCCACCGACGCCGACCCGCTCGGGGTTGCCCTGGTCACGTCCGACGCGCACGCCGGCATCAAGGCCGCGGTGAAAGCGATCCTGCCCGGCTCGGGGTGG
CAACGATGCCGAGTGCATTTCGCGCGCAACGTGACCCAGAAGCTCGGCTCAGCACGCTCCAAGCCGGTCAACGCGCTGATCTCCACGATCTTCGCGCAGA
CCACCCCCGAAGCGGTGATCGCGCAGTATCACCAGGTCACCGACAGTCTGCGCGGCTCGTTCCCCGAGATCACCGCCATGCTCGAGGCCGCCGAGCCGGA
CCTCACCGGGTTCGCCCCGCTGCCCCGGGAGCACTGGCAGAAGGTCTGGTCCAACAACCCCATCGAGCGCCTCAACCGCGAGATCAAACGCCGCGCCGAC
GTCGTCCAGATCTTCCCCGACCGCGACTCCGTGACCCGCCTGATCGGCGCGGTCCTCCAGGAACAACACGAGGAATGGCAATACGGCGAACGCCGCTACT
TCTCCGACATCTCGATGCGCAAACTCGTCCACACCCTGCACGAACACACCGAACCCGCCCGCCCCGAGCTCTACCTCACCGCCTGACCACCACCCACCCA
CAGGGAACAACGGAATGACACCACGCCACGGGACTTGACC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1269 bp | 422 aa | 118 | 1386 | + | No |
Chemistry : DDE
ORF sequence :
MTHNQSALTTLIGEVLADPDLAHSDVFRRMLQAGLQDLINAEATVKIGAARYERTPERTTRRNGTRPKTLATPAGEVDLQIPKLREGSFFPSLLSPRRRV
DKALYAVICQAWIDGVSTRKVDQLVRALGNDTGISRSTVSRICGEIDEAVQEFLSRRIDHTWFPYLFLDATYLDVRHRGRVASQALVVATGVSGEGRREI
LGMALGDAETTDFWTEFLRSLRDRGLKVATDADPLGVALVTSDAHAGIKAAVKAILPGSGWQRCRVHFARNVTQKLGSARSKPVNALISTIFAQTTPEAV
IAQYHQVTDSLRGSFPEITAMLEAAEPDLTGFAPLPREHWQKVWSNNPIERLNREIKRRADVVQIFPDRDSVTRLIGAVLQEQHEEWQYGERRYFSDISM
RKLVHTLHEHTEPARPELYLTA
DKALYAVICQAWIDGVSTRKVDQLVRALGNDTGISRSTVSRICGEIDEAVQEFLSRRIDHTWFPYLFLDATYLDVRHRGRVASQALVVATGVSGEGRREI
LGMALGDAETTDFWTEFLRSLRDRGLKVATDADPLGVALVTSDAHAGIKAAVKAILPGSGWQRCRVHFARNVTQKLGSARSKPVNALISTIFAQTTPEAV
IAQYHQVTDSLRGSFPEITAMLEAAEPDLTGFAPLPREHWQKVWSNNPIERLNREIKRRADVVQIFPDRDSVTRLIGAVLQEQHEEWQYGERRYFSDISM
RKLVHTLHEHTEPARPELYLTA
Blast result :
Comments
ISMlu3 is 90% aa similar to ISBli2 .
References
1] ISfinder annotation (2018)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.