ISAbe10

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LKDJ01000001 ND Acinetobacter bereziniae
Acinetobacter bereziniae HPC229
DNA section
IS Length : 1313 bp

Ends


IR Length : 25/29

IRL : GAGCCTGTAAATAAAACTGTGTAAATGTCCAAATCTTAGTACCCTGTAAT
IRR : GAGCCTGTAAAAACTTCTGTGTAAATGTCGCTTAAATGAAAGCGTCTAAA

Insertion site


Left flankDirect repeatRight flankDR Length
CATTTTATACACTATCTTTTTCGAGTTTTTG8

DNA sequence

GAGCCTGTAAATAAAACTGTGTAAATGTCCAAATCTTAGTACCCTGTAATAGGGATAGATGGAGACATCCACAATGGATCACAGTCAATTGATGGCACTG
GCAAAAGAATTTGCCAAAAACCTAAAAACAGATTCTGACCTGAATGAATTCAGTAAAGCTCTAAAGAAACTTACCGTTGAAACAGCCCTAAATGCAGAAC
TCACTGAGCATTTAGGGCATGAGCGTCACCAGCCTAGTGCCAAAGGCAATGCACGTAATGGCTACAGTAAGAAGCAACTACTCACGGGTGATGGTGAGTT
TGAGCTGAATACCCCACGTGATCGTGATGGTACATTTGAACCACAATTGGTGAAGAAACACCAAACCAGAATCACCAGCATGGATAGCCAAATCCTATCG
CTGTATGCCAAAGGCATGACCACCCGTGAAATCGTCAGTACATTCAAAGAACTATACGATGCAGATGTATCTCCTAGTTTGATTTCCAAGGTGACAGATG
CGGTTAAAGAGCAAGTGATTGAGTGGCAGAATCGCCCACTCGATAACATTTACCCCATCGTGTACCTTGATTGCATTGTGGTGAAGGTCAGACAGGACAA
CAGCGTTATTAACAAAGCTGTCTTTCTAGCATTGGGTGTTAACCTTGAGGGTCACAAAGAACTGCTGGGTATGTGGATCGCCGAGAATGAAGGTGCCAAA
TTCTGGCTGTCCGTTCTAACAGAACTAAAGAATCGTGGTGTACAAGACATTCTGATTGCCTGTGTAGATGGTTTGAAAGGCTTTCCTGATGCGATTACTA
CCGTCTACCCACAAACACGCATTCAACTATGTATTATCCACATGGTACGCAACAGTTTGAAATATGTGAGTTGGAAGGACTATAAAGCCGTCACCAGTGA
CTTGAGGCGTATTTATCAAGCTGCTACTGAAGAGTCTGCCTTGCAGGCATTAGAAGTCTTTGCGAGCACATGGGATGATAAATACCCGCAGATTAGCAAA
TCTTGGTACGGGCACTGGCAGAACCTAAATACCTTGTTTGCTTATCCAGCAGATATTCGTAAAGCGATTTACACCACCAATGCAATTGAATCACTAAATA
GTGTGATTCGGCAGGCAATCAAGAAGCGTAAGCTCTTTCCAACCGATGACTCGGTCAGAAAGGTAATCTATTTGGCAATTGAAGCTGCATCAAAAAAGTG
GAATATGCCAATTCGGGATTGGCGTGCTGCTATGAATCGGTTTATGATCGAATTTGAAGGTCGTTTAGACGCTTTCATTTAAGCGACATTTACACAGAAG
TTTTTACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa741282+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDHSQLMALAKEFAKNLKTDSDLNEFSKALKKLTVETALNAELTEHLGHERHQPSAKGNARNGYSKKQLLTGDGEFELNTPRDRDGTFEPQLVKKHQTRI
TSMDSQILSLYAKGMTTREIVSTFKELYDADVSPSLISKVTDAVKEQVIEWQNRPLDNIYPIVYLDCIVVKVRQDNSVINKAVFLALGVNLEGHKELLGM
WIAENEGAKFWLSVLTELKNRGVQDILIACVDGLKGFPDAITTVYPQTRIQLCIIHMVRNSLKYVSWKDYKAVTSDLRRIYQAATEESALQALEVFASTW
DDKYPQISKSWYGHWQNLNTLFAYPADIRKAIYTTNAIESLNSVIRQAIKKRKLFPTDDSVRKVIYLAIEAASKKWNMPIRDWRAAMNRFMIEFEGRLDA
FI

 

Blast result :
Comments
ISAbe10 is 90% aa similar to ISAba42.
References
1] Brovedan M.A. (2018) Direct submission.
2] Brovedan,M., Marchiaro,P.M., Moran-Barrio,J., Revale,S., Cameranesi,M., Brambilla,L., Viale,A.M. and Limansky,A.S. (2016) Genome Announc 4 (2).