ISEch1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002038 | ND | Dickeya dadantii | Dickeya dadantii 3937 |
DNA section
IS Length : 1348 bp
Ends
IR Length : 7/8
IRL : TCATCGCACGCACGACAAGGAGAGGCTTGTATCTTGCTCATGTCGTGATT
IRR : CGTCACGGACGGTCCGAACAGCGAAGGCGAACGCCGAAGGGACCGCGAAG
Comments : IRs are not at the termini of the sequence according of the rules of this subgroup.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATTTCTTTGCAATT | CGTTCCAGACGCGGCAC | 0 |
DNA sequence
TCATCGCACGCACGACAAGGAGAGGCTTGTATCTTGCTCATGTCGTGATTAGCTATCACGACATGAAACAGAGTGAGCTTCGAAGGAGAGTCAGGGCTGT
AAACCTTGTGTGTGAGTTTAAGCCCTCTGTTTCACCTTTCACGCCAGCATTAACATTGAACGGTTACCCAGAGCACTGACTCTGAATGTACAAGCGGAAC
GGGCGTGATGGCTTCAGTGAAAGGGGGACATCGTTATGTATTATGTTGGTATTGATATCAGTAAGCGTGTCGTCGATGTGTGTTTGTTAGCTGATGGCAT
TAAAGGTAAACGGAAGACGAAAACGTTACCCAATGGCCCCAACGCCGTTCAGGCGTTGGCTGAATGGTTGACGCGACAAAAATGTGAGCCGAGTCAGGCC
CATATCATCATGGAAGCCACGGGGGTTTATCACGAACACCTCGCTTATGGTCTTCATCATTCAGGTATTGCCGTATCCGTGATAAACCCTCATCGGTTGC
GTGAGTTTGCCAGGGGGATGGGGATTCTCACGAAGACGGATAAAGTGGATGCCTGTGTGCTGGCCTGTTATGGCTGTCTGAGACAGCCGGAGGGCTGGAC
GCCTCCTTCGCCAGAAATAAGGAAACTCAGGGCATTACTGCAGCACAGGGATAGTCTGCTGGGTGATAAACAGCGCCTGGAAAACCGGCTGAGCACGTTA
AACGCCACACTGACGACGGAAGAAGTGGTGACATCGCTGGAGTCGATGGTGCAGCACGTAAAGGGTGAGCTGGAGCGTATAGAAAGACTGATAGAAGACC
ACATCGACAGGCATCCCGGGCTGAAAAATGACCTGAAACTCCTGAAGTCGATAGATGGAGTGGGAGACCAAATCGGATGGAACATGTTGGCCACCATCAG
GGGCAGTAACTTCAGGAGCGCAGAACAGGTGGCGGCGTATCTGGGGGTTATCCCGGTAGAGCGTCGCTCGGGAACCTCGGTACGTGGCAGAGCGAGGTTG
TCGAAAATAGGGCCGCCTGCTATCAGGGCAAAACTGTATATGGGAGCAATAGCGGCCATCAGTCACAATCGTCATGTGAAGGCGCAATACGAGCGACTGT
TGCTAAAAGGCAAGGCAAAGATGCTGGCGATAGGAGCGGCGATGAGGAAGCTGGTTCATCTGTGTTACGGCGTGCTGCATACGCAGCAACGATATGACAG
GGATTATGGGGTGGTAGCCAGTTGAAATACTTGACTGGAGACACGGTTACTCAAACGCCGCCTCTCCTTGACCACTGGCTGGAGGCTAAACTATGCCGCT
TCGCGGTCCCTTCGGCGTTCGCCTTCGCTGTTCGGACCGTCCGTGACG
AAACCTTGTGTGTGAGTTTAAGCCCTCTGTTTCACCTTTCACGCCAGCATTAACATTGAACGGTTACCCAGAGCACTGACTCTGAATGTACAAGCGGAAC
GGGCGTGATGGCTTCAGTGAAAGGGGGACATCGTTATGTATTATGTTGGTATTGATATCAGTAAGCGTGTCGTCGATGTGTGTTTGTTAGCTGATGGCAT
TAAAGGTAAACGGAAGACGAAAACGTTACCCAATGGCCCCAACGCCGTTCAGGCGTTGGCTGAATGGTTGACGCGACAAAAATGTGAGCCGAGTCAGGCC
CATATCATCATGGAAGCCACGGGGGTTTATCACGAACACCTCGCTTATGGTCTTCATCATTCAGGTATTGCCGTATCCGTGATAAACCCTCATCGGTTGC
GTGAGTTTGCCAGGGGGATGGGGATTCTCACGAAGACGGATAAAGTGGATGCCTGTGTGCTGGCCTGTTATGGCTGTCTGAGACAGCCGGAGGGCTGGAC
GCCTCCTTCGCCAGAAATAAGGAAACTCAGGGCATTACTGCAGCACAGGGATAGTCTGCTGGGTGATAAACAGCGCCTGGAAAACCGGCTGAGCACGTTA
AACGCCACACTGACGACGGAAGAAGTGGTGACATCGCTGGAGTCGATGGTGCAGCACGTAAAGGGTGAGCTGGAGCGTATAGAAAGACTGATAGAAGACC
ACATCGACAGGCATCCCGGGCTGAAAAATGACCTGAAACTCCTGAAGTCGATAGATGGAGTGGGAGACCAAATCGGATGGAACATGTTGGCCACCATCAG
GGGCAGTAACTTCAGGAGCGCAGAACAGGTGGCGGCGTATCTGGGGGTTATCCCGGTAGAGCGTCGCTCGGGAACCTCGGTACGTGGCAGAGCGAGGTTG
TCGAAAATAGGGCCGCCTGCTATCAGGGCAAAACTGTATATGGGAGCAATAGCGGCCATCAGTCACAATCGTCATGTGAAGGCGCAATACGAGCGACTGT
TGCTAAAAGGCAAGGCAAAGATGCTGGCGATAGGAGCGGCGATGAGGAAGCTGGTTCATCTGTGTTACGGCGTGCTGCATACGCAGCAACGATATGACAG
GGATTATGGGGTGGTAGCCAGTTGAAATACTTGACTGGAGACACGGTTACTCAAACGCCGCCTCTCCTTGACCACTGGCTGGAGGCTAAACTATGCCGCT
TCGCGGTCCCTTCGGCGTTCGCCTTCGCTGTTCGGACCGTCCGTGACG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
990 bp | 329 aa | 236 | 1225 | + | No |
Chemistry : DEDD
ORF sequence :
MYYVGIDISKRVVDVCLLADGIKGKRKTKTLPNGPNAVQALAEWLTRQKCEPSQAHIIMEATGVYHEHLAYGLHHSGIAVSVINPHRLREFARGMGILTK
TDKVDACVLACYGCLRQPEGWTPPSPEIRKLRALLQHRDSLLGDKQRLENRLSTLNATLTTEEVVTSLESMVQHVKGELERIERLIEDHIDRHPGLKNDL
KLLKSIDGVGDQIGWNMLATIRGSNFRSAEQVAAYLGVIPVERRSGTSVRGRARLSKIGPPAIRAKLYMGAIAAISHNRHVKAQYERLLLKGKAKMLAIG
AAMRKLVHLCYGVLHTQQRYDRDYGVVAS
TDKVDACVLACYGCLRQPEGWTPPSPEIRKLRALLQHRDSLLGDKQRLENRLSTLNATLTTEEVVTSLESMVQHVKGELERIERLIEDHIDRHPGLKNDL
KLLKSIDGVGDQIGWNMLATIRGSNFRSAEQVAAYLGVIPVERRSGTSVRGRARLSKIGPPAIRAKLYMGAIAAISHNRHVKAQYERLLLKGKAKMLAIG
AAMRKLVHLCYGVLHTQQRYDRDYGVVAS
Blast result :
Comments
ISEch1 is 61% aa similar to IS1663 .
References
1] ISfinder submission (2018)
2] Glasner,J.D., Yang,C.H., Reverchon,S., Hugouvieux-Cotte-Pattat,N., Condemine,G., Bohin,J.P., Van Gijsegem,F., Yang,S., Franza,T., Expert,D., Plunkett,G. Iii, San Francisco,M.J., Charkowski,A.O., Py,B., Bell,K., Rauscher,L., Rodriguez-Palenzuela,P., Toussaint,A., Holeva,M.C., He,S.Y., Douet,V., Boccara,M., Blanco,C., Toth,I., Anderson,B.D., Biehl,B.S., Mau,B., Flynn,S.M., Barras,F., Lindeberg,M., Birch,P.R., Tsuyumu,S., Shi,X., Hibbing,M., Yap,M.N., Carpentier,M., Dassa,E., Umehara,M., Kim,J.F., Rusch,M., Soni,P., Mayhew,G.F., Fouts,D.E., Gill,S.R., Blattner,F.R., Keen,N.T. and Perna,N.T. (2011) J. Bacteriol. 193 (8), 2076-2077.
2] Glasner,J.D., Yang,C.H., Reverchon,S., Hugouvieux-Cotte-Pattat,N., Condemine,G., Bohin,J.P., Van Gijsegem,F., Yang,S., Franza,T., Expert,D., Plunkett,G. Iii, San Francisco,M.J., Charkowski,A.O., Py,B., Bell,K., Rauscher,L., Rodriguez-Palenzuela,P., Toussaint,A., Holeva,M.C., He,S.Y., Douet,V., Boccara,M., Blanco,C., Toth,I., Anderson,B.D., Biehl,B.S., Mau,B., Flynn,S.M., Barras,F., Lindeberg,M., Birch,P.R., Tsuyumu,S., Shi,X., Hibbing,M., Yap,M.N., Carpentier,M., Dassa,E., Umehara,M., Kim,J.F., Rusch,M., Soni,P., Mayhew,G.F., Fouts,D.E., Gill,S.R., Blattner,F.R., Keen,N.T. and Perna,N.T. (2011) J. Bacteriol. 193 (8), 2076-2077.