ISEc44

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010498 ND Escherichia coli
Escherichia coli SMS-3-5
DNA section
IS Length : 1879 bp

Ends


Left end : CTTCCCCTCCAAAGGGTACTCCCGCCGACATAAGGCGGGAGGGGAATTTGGACGGGCTTGAAAAGCCCGAAGGGTGATCAGCCACGCTGATGTTGAATGT II struct. : Yes
Right end : CTCGATGAAGCAGGAACCAGACGCTGAGCAATCAGCCGTCACCCACTAATGGGAATCCCCCTCCTGAGTCACGAAGTGCGAAGGTGGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCTGTTTTTCACCATGTAGCCTTCGTTCAA

DNA sequence

CTTCCCCTCCAAAGGGTACTCCCGCCGACATAAGGCGGGAGGGGAATTTGGACGGGCTTGAAAAGCCCGAAGGGTGATCAGCCACGCTGATGTTGAATGT
ATTGCTTCACAACTTCCAGCGGCGCACCTCCGCAGGAGCCAGCAAAGTATGACCTCGACCAGAGCACGGCTTTTCCGTATGCCCCCCGCAAATCAAGAAA
TTCGTTTCGCAGACGGCGGGATGTCACTGCTTTCAGTGAGTTAACCAGTACCGAAAGCTGCACTGTTGGTGGGTATTCGATCAGCATGTGAACATGATCT
ACGTCTCCGTTACTTTCTTTTAGTTCTGCCCCAAAATCACGGCAGACTTCTGCTGCATACTGATGGAATGCTGCACAGTGTAACTCTCCCAGTATCTTTC
GACGGTATTTTGTTACAAAGACAAGATGAACATGCAAAAGGAAGGCTGCATGTCTTGAACGATTGATTTTATATTTTTGCATTGAGGTTGGTCGTAAAAG
CAGTAATATTGCAAGAAAATCTACTACACACTGAATGATGATGCTAATCCTGAAAGCCTACAAATTCAGACTGGAACCAACGCATGAGCAGTCGCAGCGT
TTGCGGCAGTTATGTGGTTGTGCCCGTTTTGTCTGGAATTTAGGTCTTGCGGAGACAAAGCGCATACTTGGCTCAGGCGAAAAGTTACCTTCGGCTTTCG
AGTTGAATCGGATGATTACAGTGTGGAAAAAAATGCCGGAATACATCTTCTTACAGGATGCTTATACCGACAATCTGCAACAAAAGCTGAAAGACCTGCA
TACCGCATGGAAACGTTGTTTTGATAAAAAGCTCGCAGCTAAGGCTCCGGTATGGAAACGAAAAAATGAGGGCAGAGACTCAATCCGTTTTGTGAACTTT
GAGAAATATTGCTGCCTTGAAAATCGCAGAGTGAAGCTACCGTCAGGTCTTGGGTGGGTAAAATTCCGGCAATCTCAACGTGTGAACGGTAAAATCAAAA
ATGCGACAATCAGTCAGTTAGCGGGACAGTGGTATATCTCGTTTCAGGTTGAAATTGAAACGGCAGAACCAAATCACACAAGCACAACGATAGTCGGACT
GGATGCAGGCGTGGCTAAACTTGCCACGCTGTCAGATGGCACAGTCTTTGAGCCTGTAAACAGTTTTCAGAAAAATCAGAAGAAGCTGGCGAGACTCCAG
CGACAGTTAAGCCGCAAGGTCAAATTCAGCAACAACTGGCAGAAGCAGAAACGCAAAATACAGCGACTGCATTCCTGTATCGCAAATATCCGCAGGGACT
ACCTTCACAAAGTCACAACGACCGTCAGCAAAAACCACGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCGGCAGCGGGTACGGT
CAGCCAGCCGGGGCGCAATGTCCGGGCAAAATCAGGTTTAAACCGTTCGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGAGTACAAACAG
CTCTGGCGTGGTGGTCATGTAGAGGCGGTAAATCCGGCATACACAAGCCAGCGTTGTTCGTGTTGCGGTCATACGGAAAAAGCAAATCGTCGCACACAAA
GTAAGTTTGAGTGCAAAGCATGTGGGTATGCTGAAAATGCGGACGTAAACGCAGCACGAAACATTTTAGCGACGTGGCACGCTCAAATGGCTACAAGTAC
CGCGGGACACGCGGAAACCGGGAGTCTGTCTCTGGGATAGACTTCCTACGCCTGTGGAGAGGTCGGTGCAGTAAGACCGCTCGATGAAGCAGGAACCAGA
CGCTGAGCAATCAGCCGTCACCCACTAATGGGAATCCCCCTCCTGAGTCACGAAGTGCGAAGGTGGGGGAGGATGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
405 bp134 aa48278-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MQKYKINRSRHAAFLLHVHLVFVTKYRRKILGELHCAAFHQYAAEVCRDFGAELKESNGDVDHVHMLIEYPPTVQLSVLVNSLKAVTSRRLRNEFLDLRG
AYGKAVLWSRSYFAGSCGGAPLEVVKQYIQHQRG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1200 bp399 aa5411740+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLILKAYKFRLEPTHEQSQRLRQLCGCARFVWNLGLAETKRILGSGEKLPSAFELNRMITVWKKMPEYIFLQDAYTDNLQQKLKDLHTAWKRCFDKKLAA
KAPVWKRKNEGRDSIRFVNFEKYCCLENRRVKLPSGLGWVKFRQSQRVNGKIKNATISQLAGQWYISFQVEIETAEPNHTSTTIVGLDAGVAKLATLSDG
TVFEPVNSFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQRLHSCIANIRRDYLHKVTTTVSKNHAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGL
NRSILDQGWYEMRRQLEYKQLWRGGHVEAVNPAYTSQRCSCCGHTEKANRRTQSKFECKACGYAENADVNAARNILATWHAQMATSTAGHAETGSLSLG

 

Blast result :
Comments
ISEc44 is 98% (transposase) aa similar to ISSen6.
References
1] ISfinder annotation (2018)
2] Fricke,W.F., Wright,M.S., Lindell,A.H., Harkins,D.M., Baker-Austin,C., Ravel,J. and Stepanauskas,R. (2008) J. Bacteriol.