ISDar1
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP000089 | ND | Dechloromonas aromatica | Dechloromonas aromatica RCB |
DNA section
IS Length : 1482 bp
Ends
IR Length : 12/13
IRL : CGAATGAAAGGGACTTCCCCGTCCCGAACTAGCGGCGGAAGCCGCAGGCA
IRR : CTACAAGGGCTTCCCCATTCTTTGCAAGCGTTCTGAAGTTTTATCGTTTC
Comments : IRs are not at the termini of the IS, according to the rules of IS110 family subgroup.
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAGCGCCTTTAC | TAGAGTTAAGA | 0 |
DNA sequence
CGAATGAAAGGGACTTCCCCGTCCCGAACTAGCGGCGGAAGCCGCAGGCAGCGTGAGCTGCCATGATTGAGTTTCCACACTGAATCATTTGCTCGAAAGG
GGAAGTCCATGAATATTGTCACTGTAGGCATCGATCTCGCCAAGAATGTATTCGCTTTGCATGCCGTTGACCAGTATGGCAAAGCCATTTTTATCAAGCC
AAAAGTAGCGCGCGGCCAATTGCTGGAAATGGTCGCCCAGCTGCCGCCCTGCCTGATCGGCATGGAAGCCTGCTCCGGTGCTCACCATTGGGCGAGAGAG
TTCAGCCGCGTCGGCCACACCGTGAAGTTGATGGCACCCAAGTTTGTGGCGCCGTACCGGATGAGCGGCAAGCGCGGCAAGAACGACGCCGCCGATGCCG
CGGCCATCTGCGAGGCCGTCACGCGGCCGAACATGCGTTTCGTCCCGGTCAAGGATGTCGATCAGCAGGCCATCCTCTGCCTGCACCGCACCCGGCAAGG
TTTTGTTGAAGAACGCACCGCGCTCTACAACCGCTTGCGCGGCCTGATCAGCGAGTTCGGCATTGTGCTGCCACAGAAAGTCGAACGCCTGCGCCGGGAA
ATCGGTGCCCACCTCGAAGCACTTCCCGGCTGGGCCAACCGCTGTGTCGGCGATCTGCTGGCTCACGCCGACCGACTGAATGAACACATCGACGAGTACG
ACAAAGCCATCGCCCTGGCCGCCAAACAAGACCAGCGGAGCCGGCAGCTCATGCAACTTCCTGGCATCGGCCCGACCACCGCCAGCGCCCTGGTTGCCAG
CCTGGGCGGCGGCCACGACTTCAAGAATGGTCGGCAGCTTGCCGCCTGGGTCGGGCTCGTTCCCGGCCAATACAGCAGTGGCGGCAAAGCCCGGCTGGGC
AGGATCACCAAGGCCGGCGACGCCTACCTGCGCAGTCTGCTCGTCATGGGCGGCCGATCTGTTCTCGCCGGACTCGGTGACAAGCAAGACCGCTTCAGTC
GTTGGGCCAGAAATCTAGTCGAGCGACGCGGGTACTGGAAAGCGGCGGTTGCCATCGCCGCCAAGAACTTGCGACTCGCCTGGGCGGTCATGCACTACGG
AGAGGAATTTCGGCGTATCGAAGATCTCGCCTGAAAAGCAAAAAGCGTTTGCAAGGAAAAACCTGAAAGGAATCACCGGCCGTTCGCTGGCGGCCCAAGA
CCAGCGAAGCACTGCCAGCGTTGATGTGAAGCGGGTTGGACCCGCGCGGGGAGCGCCTGATTAACTCAAGGGGAGGCAAGCGACTCCCGGCTAACGATTG
AGGCCCCCGCGCGCGTCTTTCATCAGGGTCCGGGCAAAAGCCCAAGATGACCGGTTGTAGTACCGCAGTCCTTCACCTTCTCGCACCGACACGACAGGGT
TCGATCAACAGTCAGAAAACAGGATCAGGAATGAAACGATAAAACTTCAGAACGCTTGCAAAGAATGGGGAAGCCCTTGTAG
GGAAGTCCATGAATATTGTCACTGTAGGCATCGATCTCGCCAAGAATGTATTCGCTTTGCATGCCGTTGACCAGTATGGCAAAGCCATTTTTATCAAGCC
AAAAGTAGCGCGCGGCCAATTGCTGGAAATGGTCGCCCAGCTGCCGCCCTGCCTGATCGGCATGGAAGCCTGCTCCGGTGCTCACCATTGGGCGAGAGAG
TTCAGCCGCGTCGGCCACACCGTGAAGTTGATGGCACCCAAGTTTGTGGCGCCGTACCGGATGAGCGGCAAGCGCGGCAAGAACGACGCCGCCGATGCCG
CGGCCATCTGCGAGGCCGTCACGCGGCCGAACATGCGTTTCGTCCCGGTCAAGGATGTCGATCAGCAGGCCATCCTCTGCCTGCACCGCACCCGGCAAGG
TTTTGTTGAAGAACGCACCGCGCTCTACAACCGCTTGCGCGGCCTGATCAGCGAGTTCGGCATTGTGCTGCCACAGAAAGTCGAACGCCTGCGCCGGGAA
ATCGGTGCCCACCTCGAAGCACTTCCCGGCTGGGCCAACCGCTGTGTCGGCGATCTGCTGGCTCACGCCGACCGACTGAATGAACACATCGACGAGTACG
ACAAAGCCATCGCCCTGGCCGCCAAACAAGACCAGCGGAGCCGGCAGCTCATGCAACTTCCTGGCATCGGCCCGACCACCGCCAGCGCCCTGGTTGCCAG
CCTGGGCGGCGGCCACGACTTCAAGAATGGTCGGCAGCTTGCCGCCTGGGTCGGGCTCGTTCCCGGCCAATACAGCAGTGGCGGCAAAGCCCGGCTGGGC
AGGATCACCAAGGCCGGCGACGCCTACCTGCGCAGTCTGCTCGTCATGGGCGGCCGATCTGTTCTCGCCGGACTCGGTGACAAGCAAGACCGCTTCAGTC
GTTGGGCCAGAAATCTAGTCGAGCGACGCGGGTACTGGAAAGCGGCGGTTGCCATCGCCGCCAAGAACTTGCGACTCGCCTGGGCGGTCATGCACTACGG
AGAGGAATTTCGGCGTATCGAAGATCTCGCCTGAAAAGCAAAAAGCGTTTGCAAGGAAAAACCTGAAAGGAATCACCGGCCGTTCGCTGGCGGCCCAAGA
CCAGCGAAGCACTGCCAGCGTTGATGTGAAGCGGGTTGGACCCGCGCGGGGAGCGCCTGATTAACTCAAGGGGAGGCAAGCGACTCCCGGCTAACGATTG
AGGCCCCCGCGCGCGTCTTTCATCAGGGTCCGGGCAAAAGCCCAAGATGACCGGTTGTAGTACCGCAGTCCTTCACCTTCTCGCACCGACACGACAGGGT
TCGATCAACAGTCAGAAAACAGGATCAGGAATGAAACGATAAAACTTCAGAACGCTTGCAAAGAATGGGGAAGCCCTTGTAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1026 bp | 341 aa | 109 | 1134 | + | No |
Chemistry : DEDD
ORF sequence :
MNIVTVGIDLAKNVFALHAVDQYGKAIFIKPKVARGQLLEMVAQLPPCLIGMEACSGAHHWAREFSRVGHTVKLMAPKFVAPYRMSGKRGKNDAADAAAI
CEAVTRPNMRFVPVKDVDQQAILCLHRTRQGFVEERTALYNRLRGLISEFGIVLPQKVERLRREIGAHLEALPGWANRCVGDLLAHADRLNEHIDEYDKA
IALAAKQDQRSRQLMQLPGIGPTTASALVASLGGGHDFKNGRQLAAWVGLVPGQYSSGGKARLGRITKAGDAYLRSLLVMGGRSVLAGLGDKQDRFSRWA
RNLVERRGYWKAAVAIAAKNLRLAWAVMHYGEEFRRIEDLA
CEAVTRPNMRFVPVKDVDQQAILCLHRTRQGFVEERTALYNRLRGLISEFGIVLPQKVERLRREIGAHLEALPGWANRCVGDLLAHADRLNEHIDEYDKA
IALAAKQDQRSRQLMQLPGIGPTTASALVASLGGGHDFKNGRQLAAWVGLVPGQYSSGGKARLGRITKAGDAYLRSLLVMGGRSVLAGLGDKQDRFSRWA
RNLVERRGYWKAAVAIAAKNLRLAWAVMHYGEEFRRIEDLA
Blast result :
Comments
ISDar1 is 87% aa similar to ISCARN111.
References
1] ISfinder annotation (2018)
2] Salinero,K.K., Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Trong,S., Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P. (2005) Direct GenBank submission.
2] Salinero,K.K., Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Trong,S., Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P. (2005) Direct GenBank submission.