ISPa94

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa pBRL16
DNA section
IS Length : 22 bp

Ends


IR Length : 22

IRL : GGCCGATTCTGTTGAAAAAGTAGCGACCTCCCCGTGCCGACGGCAGAATC
IRR : GGCCGATTCTGTTGAAAAACTAAGTTCTGCGGCAGCCAGCTGGTCAGCGG

Comments : GGCCGATTCTGTTGAAAAAGTAGCGACCTCCCCGTGCCGACGGCAG GGCCGATTCTGTTGAAAAACTAAGTTCTGCGGCAGCCAGCTGGTCAG

Insertion site


Left flankDirect repeatRight flankDR Length
TTATCCGGAGCTTCAATGCCTTCCACACAACTCGAAGCC5

DNA sequence

GGCCGATTCTGTTGAAAAAGTAGCGACCTCCCCGTGCCGACGGCAGAATCACTCTGTCGGTGAGCGCGGGGGCGAACAGCATGATGGGACAGCTACCGGG
TGGACAGCAGCGTCTGTTCTACTCGTTCAATCTGGAAGACCACGTCCCAGCCCAACACCTCCTGCGCAGTATCGACCAGAGCCTGGATCTGAGTGACCTG
CGCAGCTACCTTGCGGATTTCTATAGCCCCATCGGACGCCCCTCGATCGACCCGGAGTTGATGGTGCGGATGCTGGTCGTTGGCTACTGCTACGGCATCC
GTTCCGAGCGACGGCTGTGCGAAGAGGTGCATTTAAATCTGGCCTATCGTTGGTTCTGCCGGCTGGGTCTGGAAGACGAAGTACCCAATCACTCAACCTT
CTCGAAGAATCGCCACGGTCGTTTCCGTGACAGCGGTCTGTTCCGTTGGTTGTTCAATGAGGTGCTGCGCCGCTGCATGGCGGCTGGCCTGGTCAAAGGC
GAAGGCTTCGCTGTGGACGCCAGCATCATCAAGGCGGATGCCAGCCGGCAACGTGGAGTGACGGGAGATGAAGTCGATTGGCGTGATCCCGCGCTCAGCA
GCCGCGCTGTGCGCGAGTATCTTGAAGCCCTTGATGAAGAGGCGCTGGCTGAAGCTCTTCCCAAGAAAATCTCGCTCACCGATCCGCTGTCCCGTTGGAC
TGCTGCGCCAGGCGGCCCGGCCTTCTTTGCCTACTCCACGAATTACCTGATCGATACCGAGCATGGCGTGATCATGGATGTGGAAGCGACTCCGGCGCAT
CGTACTGCCGAGGTCGATTCGACCAGGACGATGGTTGATCGCGTTGAAGCGCAGTTTAACCTCACGCCAGAGCGCCTCATTGGTGATACCGCCTATGGCA
CTGCCCCGATGCTGGCCTGGATGGTCGAAGAAAAGAACATCGACCCGCATGTCCCAGTCTGGGACAAGACCGAGCGCAAAGACGACAGCTTCTCCAGTAA
CGACTTCCACTGGAATCCGGAGGCCAATGAATACCACTGCCCAACCGGCAAACCGCTACGCAGTGAATGGCGCGCCTTCACCCAGAAAAGATCGCGGGTG
ACCAAGGCCAACACCATCATCTACCGCTCCAGTCAAACCGACTGCGCCACATGTCCGCTGAAAGCGAAGTGCTGCCCTAACACACCGAATCGGAAGATCG
TCCGCAGCATCCATGAAGCTGCCCGCGACGTGGCCCGACGCATCGCCAAGACACCGGAATACCTTGTCTCTCGTTGCGAACGGAAGAAGGTGGAGATGCT
TTTCGCCCACCTCAAACGGATCATGAAACTCGACCGTTTACGATTGCGTGGCCTGACAGGTGCCGCTGACGAATTCACCTTGGCTGCGACGGTGCAGAAC
CTGCGCCGCATGGCCAAGCTTTTGCCTCAAGGGCCACCACTCACGGGATAGGTGCGCCTGCGGCGAGCAGAAACCCTCGAATTAACCCTCAGACCTGGGC
AAGGAAGCTCAGTGAAACGCCGAAAGGCAACTTGAAGTGGCTTCCAGTCACTTCGATAGCAGGCACCGCTGACCAGCTGGCTGCCGCAGAACTTAGTTTT
TCAACAGAATCGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1371 bp456 aa811451+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMGQLPGGQQRLFYSFNLEDHVPAQHLLRSIDQSLDLSDLRSYLADFYSPIGRPSIDPELMVRMLVVGYCYGIRSERRLCEEVHLNLAYRWFCRLGLEDE
VPNHSTFSKNRHGRFRDSGLFRWLFNEVLRRCMAAGLVKGEGFAVDASIIKADASRQRGVTGDEVDWRDPALSSRAVREYLEALDEEALAEALPKKISLT
DPLSRWTAAPGGPAFFAYSTNYLIDTEHGVIMDVEATPAHRTAEVDSTRTMVDRVEAQFNLTPERLIGDTAYGTAPMLAWMVEEKNIDPHVPVWDKTERK
DDSFSSNDFHWNPEANEYHCPTGKPLRSEWRAFTQKRSRVTKANTIIYRSSQTDCATCPLKAKCCPNTPNRKIVRSIHEAARDVARRIAKTPEYLVSRCE
RKKVEMLFAHLKRIMKLDRLRLRGLTGAADEFTLAATVQNLRRMAKLLPQGPPLTG

 

Blast result :
Comments
ISPa94 is 95% aa similar to ISCfr1.
References