ISPa94
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa pBRL16 |
DNA section
IS Length : 22 bp
Ends
IR Length : 22
IRL : GGCCGATTCTGTTGAAAAAGTAGCGACCTCCCCGTGCCGACGGCAGAATC
IRR : GGCCGATTCTGTTGAAAAACTAAGTTCTGCGGCAGCCAGCTGGTCAGCGG
Comments : GGCCGATTCTGTTGAAAAAGTAGCGACCTCCCCGTGCCGACGGCAG GGCCGATTCTGTTGAAAAACTAAGTTCTGCGGCAGCCAGCTGGTCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATCCGGAGCTTCAATGC | CTTCC | ACACAACTCGAAGCC | 5 |
DNA sequence
GGCCGATTCTGTTGAAAAAGTAGCGACCTCCCCGTGCCGACGGCAGAATCACTCTGTCGGTGAGCGCGGGGGCGAACAGCATGATGGGACAGCTACCGGG
TGGACAGCAGCGTCTGTTCTACTCGTTCAATCTGGAAGACCACGTCCCAGCCCAACACCTCCTGCGCAGTATCGACCAGAGCCTGGATCTGAGTGACCTG
CGCAGCTACCTTGCGGATTTCTATAGCCCCATCGGACGCCCCTCGATCGACCCGGAGTTGATGGTGCGGATGCTGGTCGTTGGCTACTGCTACGGCATCC
GTTCCGAGCGACGGCTGTGCGAAGAGGTGCATTTAAATCTGGCCTATCGTTGGTTCTGCCGGCTGGGTCTGGAAGACGAAGTACCCAATCACTCAACCTT
CTCGAAGAATCGCCACGGTCGTTTCCGTGACAGCGGTCTGTTCCGTTGGTTGTTCAATGAGGTGCTGCGCCGCTGCATGGCGGCTGGCCTGGTCAAAGGC
GAAGGCTTCGCTGTGGACGCCAGCATCATCAAGGCGGATGCCAGCCGGCAACGTGGAGTGACGGGAGATGAAGTCGATTGGCGTGATCCCGCGCTCAGCA
GCCGCGCTGTGCGCGAGTATCTTGAAGCCCTTGATGAAGAGGCGCTGGCTGAAGCTCTTCCCAAGAAAATCTCGCTCACCGATCCGCTGTCCCGTTGGAC
TGCTGCGCCAGGCGGCCCGGCCTTCTTTGCCTACTCCACGAATTACCTGATCGATACCGAGCATGGCGTGATCATGGATGTGGAAGCGACTCCGGCGCAT
CGTACTGCCGAGGTCGATTCGACCAGGACGATGGTTGATCGCGTTGAAGCGCAGTTTAACCTCACGCCAGAGCGCCTCATTGGTGATACCGCCTATGGCA
CTGCCCCGATGCTGGCCTGGATGGTCGAAGAAAAGAACATCGACCCGCATGTCCCAGTCTGGGACAAGACCGAGCGCAAAGACGACAGCTTCTCCAGTAA
CGACTTCCACTGGAATCCGGAGGCCAATGAATACCACTGCCCAACCGGCAAACCGCTACGCAGTGAATGGCGCGCCTTCACCCAGAAAAGATCGCGGGTG
ACCAAGGCCAACACCATCATCTACCGCTCCAGTCAAACCGACTGCGCCACATGTCCGCTGAAAGCGAAGTGCTGCCCTAACACACCGAATCGGAAGATCG
TCCGCAGCATCCATGAAGCTGCCCGCGACGTGGCCCGACGCATCGCCAAGACACCGGAATACCTTGTCTCTCGTTGCGAACGGAAGAAGGTGGAGATGCT
TTTCGCCCACCTCAAACGGATCATGAAACTCGACCGTTTACGATTGCGTGGCCTGACAGGTGCCGCTGACGAATTCACCTTGGCTGCGACGGTGCAGAAC
CTGCGCCGCATGGCCAAGCTTTTGCCTCAAGGGCCACCACTCACGGGATAGGTGCGCCTGCGGCGAGCAGAAACCCTCGAATTAACCCTCAGACCTGGGC
AAGGAAGCTCAGTGAAACGCCGAAAGGCAACTTGAAGTGGCTTCCAGTCACTTCGATAGCAGGCACCGCTGACCAGCTGGCTGCCGCAGAACTTAGTTTT
TCAACAGAATCGGCC
TGGACAGCAGCGTCTGTTCTACTCGTTCAATCTGGAAGACCACGTCCCAGCCCAACACCTCCTGCGCAGTATCGACCAGAGCCTGGATCTGAGTGACCTG
CGCAGCTACCTTGCGGATTTCTATAGCCCCATCGGACGCCCCTCGATCGACCCGGAGTTGATGGTGCGGATGCTGGTCGTTGGCTACTGCTACGGCATCC
GTTCCGAGCGACGGCTGTGCGAAGAGGTGCATTTAAATCTGGCCTATCGTTGGTTCTGCCGGCTGGGTCTGGAAGACGAAGTACCCAATCACTCAACCTT
CTCGAAGAATCGCCACGGTCGTTTCCGTGACAGCGGTCTGTTCCGTTGGTTGTTCAATGAGGTGCTGCGCCGCTGCATGGCGGCTGGCCTGGTCAAAGGC
GAAGGCTTCGCTGTGGACGCCAGCATCATCAAGGCGGATGCCAGCCGGCAACGTGGAGTGACGGGAGATGAAGTCGATTGGCGTGATCCCGCGCTCAGCA
GCCGCGCTGTGCGCGAGTATCTTGAAGCCCTTGATGAAGAGGCGCTGGCTGAAGCTCTTCCCAAGAAAATCTCGCTCACCGATCCGCTGTCCCGTTGGAC
TGCTGCGCCAGGCGGCCCGGCCTTCTTTGCCTACTCCACGAATTACCTGATCGATACCGAGCATGGCGTGATCATGGATGTGGAAGCGACTCCGGCGCAT
CGTACTGCCGAGGTCGATTCGACCAGGACGATGGTTGATCGCGTTGAAGCGCAGTTTAACCTCACGCCAGAGCGCCTCATTGGTGATACCGCCTATGGCA
CTGCCCCGATGCTGGCCTGGATGGTCGAAGAAAAGAACATCGACCCGCATGTCCCAGTCTGGGACAAGACCGAGCGCAAAGACGACAGCTTCTCCAGTAA
CGACTTCCACTGGAATCCGGAGGCCAATGAATACCACTGCCCAACCGGCAAACCGCTACGCAGTGAATGGCGCGCCTTCACCCAGAAAAGATCGCGGGTG
ACCAAGGCCAACACCATCATCTACCGCTCCAGTCAAACCGACTGCGCCACATGTCCGCTGAAAGCGAAGTGCTGCCCTAACACACCGAATCGGAAGATCG
TCCGCAGCATCCATGAAGCTGCCCGCGACGTGGCCCGACGCATCGCCAAGACACCGGAATACCTTGTCTCTCGTTGCGAACGGAAGAAGGTGGAGATGCT
TTTCGCCCACCTCAAACGGATCATGAAACTCGACCGTTTACGATTGCGTGGCCTGACAGGTGCCGCTGACGAATTCACCTTGGCTGCGACGGTGCAGAAC
CTGCGCCGCATGGCCAAGCTTTTGCCTCAAGGGCCACCACTCACGGGATAGGTGCGCCTGCGGCGAGCAGAAACCCTCGAATTAACCCTCAGACCTGGGC
AAGGAAGCTCAGTGAAACGCCGAAAGGCAACTTGAAGTGGCTTCCAGTCACTTCGATAGCAGGCACCGCTGACCAGCTGGCTGCCGCAGAACTTAGTTTT
TCAACAGAATCGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1371 bp | 456 aa | 81 | 1451 | + | No |
Chemistry : DDE
ORF sequence :
MMGQLPGGQQRLFYSFNLEDHVPAQHLLRSIDQSLDLSDLRSYLADFYSPIGRPSIDPELMVRMLVVGYCYGIRSERRLCEEVHLNLAYRWFCRLGLEDE
VPNHSTFSKNRHGRFRDSGLFRWLFNEVLRRCMAAGLVKGEGFAVDASIIKADASRQRGVTGDEVDWRDPALSSRAVREYLEALDEEALAEALPKKISLT
DPLSRWTAAPGGPAFFAYSTNYLIDTEHGVIMDVEATPAHRTAEVDSTRTMVDRVEAQFNLTPERLIGDTAYGTAPMLAWMVEEKNIDPHVPVWDKTERK
DDSFSSNDFHWNPEANEYHCPTGKPLRSEWRAFTQKRSRVTKANTIIYRSSQTDCATCPLKAKCCPNTPNRKIVRSIHEAARDVARRIAKTPEYLVSRCE
RKKVEMLFAHLKRIMKLDRLRLRGLTGAADEFTLAATVQNLRRMAKLLPQGPPLTG
VPNHSTFSKNRHGRFRDSGLFRWLFNEVLRRCMAAGLVKGEGFAVDASIIKADASRQRGVTGDEVDWRDPALSSRAVREYLEALDEEALAEALPKKISLT
DPLSRWTAAPGGPAFFAYSTNYLIDTEHGVIMDVEATPAHRTAEVDSTRTMVDRVEAQFNLTPERLIGDTAYGTAPMLAWMVEEKNIDPHVPVWDKTERK
DDSFSSNDFHWNPEANEYHCPTGKPLRSEWRAFTQKRSRVTKANTIIYRSSQTDCATCPLKAKCCPNTPNRKIVRSIHEAARDVARRIAKTPEYLVSRCE
RKKVEMLFAHLKRIMKLDRLRLRGLTGAADEFTLAATVQNLRRMAKLLPQGPPLTG
Blast result :
Comments
ISPa94 is 95% aa similar to ISCfr1.
References