ISHsal16
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038631 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 |
DNA section
IS Length : 1153 bp
Ends
IR Length : 18/24
IRL : GTGGTTAGGGGAAGTTATGGAGGTGGCGCCTGATATGAGAGTATGCCCGG
IRR : GTAGCTAGCGTAACTTCTGGAGGTATCCGCCAAGATACTCGTCGATCCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCACGCCGAGGA | TA | AACTCGGCGTGG | 2 |
DNA sequence
GTGGTTAGGGGAAGTTATGGAGGTGGCGCCTGATATGAGAGTATGCCCGGAGATCGCCGCAAAGAGATCGTCCGTCACCTCAGTGAGGACGATCTCGACC
GGCTCCTTGCGGAGTCTACTGACGAGAAACTCACTGAGCGGCTGATCTTCGTCAAACGTCTCTACAAGGGAGCGACGCTGGAGGACGCTGCCGACGATGT
CGGCAGGTCCTCCGGGACGGGAACACGCTGGGCCCGCCGGTGGAACGAAGGTGGTCTCGGTCTCCTGATGCCGAACTTCGGGGGCGGCAGGCCCCCGAAG
CTCGGCGACGACCAACGCGAGCACCTCTTGGAACTCCTTCGTGACGGCCAACCGTGGAAGAAACAGGAAATACAGCACCTCATTAACGAAGAATTCGACG
TAGAGTTTCACCCGGTCTATCTCAGTACCTTCCTCGAAAATCTCGGCCTTTCCTACGCAATCCCACGGACTAAGCGTCCATCACGCCCGGAGAACGCCGA
AGAGATTCTCGACGAACGCGTCGCTGACGCGTTCGACGAGGAGCCTGACGACACACCGCACAACAAACGCGACGGTGACGACGAGGAAGGATGGGTCGTT
GACGAGGAAATCCGGACGGACGGTGGAACCGTCCTTGGATTTCTCGACGCATCCCATCCACAACCGTGGGACAACTCACAGCGACTCTACACCGTGGATG
ATCCGCACATCACCCGACCGCTGGTGAAGTTAGACGAACCAGCGGTCGGGTTCTATGCAGTCTCTGGTGAGAGTGTCGTTCAGTTTCCGACCAATCAAGA
GAAAGAACGGATTTGCGAGTGTCTCGAAGGGATCCGCGAGCAGAATCCGGGACAGCGGATTCTGCTCGTCTTGGACAACTTCTCCTCACACGCGTGCGAG
TACACGCGTAAGCGAGCCCATCAACTTGGCATCGATCTCGTGTTTCTCCCGGTTGGCTCACCGGATCTCAACCCAATCGAGCAGGTCTGGAAGAGCCTCA
AGTGGAAAGCATCACCGCTGATTGTGGAGAGCGCGGCAGAATACCGCGCTCTCCTCACTGAGCTCTTTGAGCAACTTACAACTCAGCTGAGTTTCGCAGC
CTCGTGGATCGACGAGTATCTTGGCGGATACCTCCAGAAGTTACGCTAGCTAC
GGCTCCTTGCGGAGTCTACTGACGAGAAACTCACTGAGCGGCTGATCTTCGTCAAACGTCTCTACAAGGGAGCGACGCTGGAGGACGCTGCCGACGATGT
CGGCAGGTCCTCCGGGACGGGAACACGCTGGGCCCGCCGGTGGAACGAAGGTGGTCTCGGTCTCCTGATGCCGAACTTCGGGGGCGGCAGGCCCCCGAAG
CTCGGCGACGACCAACGCGAGCACCTCTTGGAACTCCTTCGTGACGGCCAACCGTGGAAGAAACAGGAAATACAGCACCTCATTAACGAAGAATTCGACG
TAGAGTTTCACCCGGTCTATCTCAGTACCTTCCTCGAAAATCTCGGCCTTTCCTACGCAATCCCACGGACTAAGCGTCCATCACGCCCGGAGAACGCCGA
AGAGATTCTCGACGAACGCGTCGCTGACGCGTTCGACGAGGAGCCTGACGACACACCGCACAACAAACGCGACGGTGACGACGAGGAAGGATGGGTCGTT
GACGAGGAAATCCGGACGGACGGTGGAACCGTCCTTGGATTTCTCGACGCATCCCATCCACAACCGTGGGACAACTCACAGCGACTCTACACCGTGGATG
ATCCGCACATCACCCGACCGCTGGTGAAGTTAGACGAACCAGCGGTCGGGTTCTATGCAGTCTCTGGTGAGAGTGTCGTTCAGTTTCCGACCAATCAAGA
GAAAGAACGGATTTGCGAGTGTCTCGAAGGGATCCGCGAGCAGAATCCGGGACAGCGGATTCTGCTCGTCTTGGACAACTTCTCCTCACACGCGTGCGAG
TACACGCGTAAGCGAGCCCATCAACTTGGCATCGATCTCGTGTTTCTCCCGGTTGGCTCACCGGATCTCAACCCAATCGAGCAGGTCTGGAAGAGCCTCA
AGTGGAAAGCATCACCGCTGATTGTGGAGAGCGCGGCAGAATACCGCGCTCTCCTCACTGAGCTCTTTGAGCAACTTACAACTCAGCTGAGTTTCGCAGC
CTCGTGGATCGACGAGTATCTTGGCGGATACCTCCAGAAGTTACGCTAGCTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1107 bp | 368 aa | 43 | 1149 | + | No |
Chemistry : DDE
ORF sequence :
MPGDRRKEIVRHLSEDDLDRLLAESTDEKLTERLIFVKRLYKGATLEDAADDVGRSSGTGTRWARRWNEGGLGLLMPNFGGGRPPKLGDDQREHLLELLR
DGQPWKKQEIQHLINEEFDVEFHPVYLSTFLENLGLSYAIPRTKRPSRPENAEEILDERVADAFDEEPDDTPHNKRDGDDEEGWVVDEEIRTDGGTVLGF
LDASHPQPWDNSQRLYTVDDPHITRPLVKLDEPAVGFYAVSGESVVQFPTNQEKERICECLEGIREQNPGQRILLVLDNFSSHACEYTRKRAHQLGIDLV
FLPVGSPDLNPIEQVWKSLKWKASPLIVESAAEYRALLTELFEQLTTQLSFAASWIDEYLGGYLQKLR
DGQPWKKQEIQHLINEEFDVEFHPVYLSTFLENLGLSYAIPRTKRPSRPENAEEILDERVADAFDEEPDDTPHNKRDGDDEEGWVVDEEIRTDGGTVLGF
LDASHPQPWDNSQRLYTVDDPHITRPLVKLDEPAVGFYAVSGESVVQFPTNQEKERICECLEGIREQNPGQRILLVLDNFSSHACEYTRKRAHQLGIDLV
FLPVGSPDLNPIEQVWKSLKWKASPLIVESAAEYRALLTELFEQLTTQLSFAASWIDEYLGGYLQKLR
Blast result :
Comments
ISHsal16 is 97% aa similar to ISHma2.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).