ISHsal16

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP038631 ND Halobacterium salinarum
Halobacterium salinarum DSM 3754
Halobacterium salinarum 91-R6
DNA section
IS Length : 1153 bp

Ends


IR Length : 18/24

IRL : GTGGTTAGGGGAAGTTATGGAGGTGGCGCCTGATATGAGAGTATGCCCGG
IRR : GTAGCTAGCGTAACTTCTGGAGGTATCCGCCAAGATACTCGTCGATCCAC

Insertion site


Left flankDirect repeatRight flankDR Length
CCACGCCGAGGATAAACTCGGCGTGG2

DNA sequence

GTGGTTAGGGGAAGTTATGGAGGTGGCGCCTGATATGAGAGTATGCCCGGAGATCGCCGCAAAGAGATCGTCCGTCACCTCAGTGAGGACGATCTCGACC
GGCTCCTTGCGGAGTCTACTGACGAGAAACTCACTGAGCGGCTGATCTTCGTCAAACGTCTCTACAAGGGAGCGACGCTGGAGGACGCTGCCGACGATGT
CGGCAGGTCCTCCGGGACGGGAACACGCTGGGCCCGCCGGTGGAACGAAGGTGGTCTCGGTCTCCTGATGCCGAACTTCGGGGGCGGCAGGCCCCCGAAG
CTCGGCGACGACCAACGCGAGCACCTCTTGGAACTCCTTCGTGACGGCCAACCGTGGAAGAAACAGGAAATACAGCACCTCATTAACGAAGAATTCGACG
TAGAGTTTCACCCGGTCTATCTCAGTACCTTCCTCGAAAATCTCGGCCTTTCCTACGCAATCCCACGGACTAAGCGTCCATCACGCCCGGAGAACGCCGA
AGAGATTCTCGACGAACGCGTCGCTGACGCGTTCGACGAGGAGCCTGACGACACACCGCACAACAAACGCGACGGTGACGACGAGGAAGGATGGGTCGTT
GACGAGGAAATCCGGACGGACGGTGGAACCGTCCTTGGATTTCTCGACGCATCCCATCCACAACCGTGGGACAACTCACAGCGACTCTACACCGTGGATG
ATCCGCACATCACCCGACCGCTGGTGAAGTTAGACGAACCAGCGGTCGGGTTCTATGCAGTCTCTGGTGAGAGTGTCGTTCAGTTTCCGACCAATCAAGA
GAAAGAACGGATTTGCGAGTGTCTCGAAGGGATCCGCGAGCAGAATCCGGGACAGCGGATTCTGCTCGTCTTGGACAACTTCTCCTCACACGCGTGCGAG
TACACGCGTAAGCGAGCCCATCAACTTGGCATCGATCTCGTGTTTCTCCCGGTTGGCTCACCGGATCTCAACCCAATCGAGCAGGTCTGGAAGAGCCTCA
AGTGGAAAGCATCACCGCTGATTGTGGAGAGCGCGGCAGAATACCGCGCTCTCCTCACTGAGCTCTTTGAGCAACTTACAACTCAGCTGAGTTTCGCAGC
CTCGTGGATCGACGAGTATCTTGGCGGATACCTCCAGAAGTTACGCTAGCTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1107 bp368 aa431149+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPGDRRKEIVRHLSEDDLDRLLAESTDEKLTERLIFVKRLYKGATLEDAADDVGRSSGTGTRWARRWNEGGLGLLMPNFGGGRPPKLGDDQREHLLELLR
DGQPWKKQEIQHLINEEFDVEFHPVYLSTFLENLGLSYAIPRTKRPSRPENAEEILDERVADAFDEEPDDTPHNKRDGDDEEGWVVDEEIRTDGGTVLGF
LDASHPQPWDNSQRLYTVDDPHITRPLVKLDEPAVGFYAVSGESVVQFPTNQEKERICECLEGIREQNPGQRILLVLDNFSSHACEYTRKRAHQLGIDLV
FLPVGSPDLNPIEQVWKSLKWKASPLIVESAAEYRALLTELFEQLTTQLSFAASWIDEYLGGYLQKLR

 

Blast result :
Comments
ISHsal16 is 97% aa similar to ISHma2.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).