ISPfa1

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP011808 ND Pandoraea faecigallinarum
Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1
DNA section
IS Length : 1441 bp

Ends


IR Length : 15

IRL : AAATGATATGAACGCCTCCCACCCGTGAGCGGTAGGAGCTAGCAGAAAGG
IRR : TATATGAACGCCTCCCGTTTGCGACGGTTTTTCGTGTGTTCCGACTGTGA

Comments : IRs are not at the termini of the IS.

Insertion site


Left flankDirect repeatRight flankDR Length
AGAAAGAAAGGAGCCGAAAAT0

DNA sequence

AAATGATATGAACGCCTCCCACCCGTGAGCGGTAGGAGCTAGCAGAAAGGAATCGAAGGCGGAGCCTCACGGGCCAACGGCAACAGAGTGCCCAGATGGA
AGACCATAGAGGTTTTCCTAGCAAACCGGAGGCTCCGAAATGAAGCATACGACAGTGGGTGTGGACATTGCAAAGAACGTGATGCAGCTCCATTACATCG
ACGCAGAGACGGGCGAAATCGTGAACAAACCGGTGAGACGGGGCGCGTTTCTCGAACACTTCGCGAATCTGGCTCCGTGCCTGGTCGGGATGGAGGCGTG
CGGTGGCTCACAGCACTGGGCCCGCAAGCTCACGACGATGGGCCACGAGGTGAAGCTGATGCCGGGGAAATTTGTGAAGGCGTTTGTGATGGGCAACAAA
AACGACGCAGCCGACGCGAAAGCCATCTGGCTAGCCGTGCAGCATGCAGGCAAATCGGTTGCGGTAAAGACGGAAACACAACAGGCGGTACTGGGACTGC
ACCGGATGCGCGAACAGTTGGTGAAGTTCCGCACAATGCAGATTAATGGCTTGCGCGGCCTGCTTGCCGAGTACGGCGAAGTGACGGGCAAAGGCCGGGC
TGCGCTGGATAAGGCGATCCCCGGTGTACTGGAGCGACTGGTCGATCGTCTGCCGGCGATTCTGATCGACACGTTGCGCGAGCAATGGAACGGGTTGGCG
GAGCTAGATAAACAGATTGCGAGCATCGAGCGACGTCTGCAGACGTGGATGAGAGAGGACAAAGCGAGCAAAGCGATTGCGGCGATACCGGGCGTTGGTC
TGCTGACGGCGACGGCGGCTGTTGCGACGATAGGCGATGCGAAGACGTTCAAATCTGGGCGAGAGTTCGCGGCTTGGATTGGATTGGTTCCGAGGCAAAC
GGGTACGGGTGGCAAGGTGCATCTGCACGGAATCAGTAAGCGAGGCGATATATATCTACGCAAGCTGTTGATCCACGGTGCGCGCAGCGTGCTGTGTCTG
GCGAAAGAGCCAGGGCCGTGGGCCGAAGGAATCAAAAAGCGGCGACCGCTAAACGTAGCAATCGTGGCTCAGGCCAACAGGATTGCCCGCACGATCTGGG
CGATCCTGGCGCACGACAGGCAGTACGAACGGGGTTACCTGAGCGTGAAGCCGGTTTAACCGATGAGCACTGGGTAGCAGGACGATTAATTTTTACAGGA
TGACACGTCGAAAGGTTGCGCTGGCAATCGTATGTAATGACAAGACAGGTCGGACCGGGACTCGCTAAACCTGAATTTTCGGATGAGCTTCGAGCTCGCT
AAGGAAATGAGGTGCGGGTCCGCGGATTTCATGGTGGGCCGCAGCGTATCGGGCTGCAACAAGCCCGGATATAAAGCTGCAACCCCTCCTGTCACAGTCG
GAACACACGAAAAACCGTCGCAAACGGGAGGCGTTCATATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1020 bp339 aa1401159+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKHTTVGVDIAKNVMQLHYIDAETGEIVNKPVRRGAFLEHFANLAPCLVGMEACGGSQHWARKLTTMGHEVKLMPGKFVKAFVMGNKNDAADAKAIWLAV
QHAGKSVAVKTETQQAVLGLHRMREQLVKFRTMQINGLRGLLAEYGEVTGKGRAALDKAIPGVLERLVDRLPAILIDTLREQWNGLAELDKQIASIERRL
QTWMREDKASKAIAAIPGVGLLTATAAVATIGDAKTFKSGREFAAWIGLVPRQTGTGGKVHLHGISKRGDIYLRKLLIHGARSVLCLAKEPGPWAEGIKK
RRPLNVAIVAQANRIARTIWAILAHDRQYERGYLSVKPV

 

Blast result :
Comments
ISPfa1 is 85% aa similar to IS884.
There is an empty site in Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-2 (CP011519).
References
1] ISfinder annotation (2018)
2] Yong,D., Ee,R., Lim,Y.-L., Yin,W.-F. and Chan,K.-G. (2016) Direct GenBank submission.