ISPfa1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP011808 | ND | Pandoraea faecigallinarum | Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1 |
DNA section
IS Length : 1441 bp
Ends
IR Length : 15
IRL : AAATGATATGAACGCCTCCCACCCGTGAGCGGTAGGAGCTAGCAGAAAGG
IRR : TATATGAACGCCTCCCGTTTGCGACGGTTTTTCGTGTGTTCCGACTGTGA
Comments : IRs are not at the termini of the IS.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAAAGAAAGG | AGCCGAAAAT | 0 |
DNA sequence
AAATGATATGAACGCCTCCCACCCGTGAGCGGTAGGAGCTAGCAGAAAGGAATCGAAGGCGGAGCCTCACGGGCCAACGGCAACAGAGTGCCCAGATGGA
AGACCATAGAGGTTTTCCTAGCAAACCGGAGGCTCCGAAATGAAGCATACGACAGTGGGTGTGGACATTGCAAAGAACGTGATGCAGCTCCATTACATCG
ACGCAGAGACGGGCGAAATCGTGAACAAACCGGTGAGACGGGGCGCGTTTCTCGAACACTTCGCGAATCTGGCTCCGTGCCTGGTCGGGATGGAGGCGTG
CGGTGGCTCACAGCACTGGGCCCGCAAGCTCACGACGATGGGCCACGAGGTGAAGCTGATGCCGGGGAAATTTGTGAAGGCGTTTGTGATGGGCAACAAA
AACGACGCAGCCGACGCGAAAGCCATCTGGCTAGCCGTGCAGCATGCAGGCAAATCGGTTGCGGTAAAGACGGAAACACAACAGGCGGTACTGGGACTGC
ACCGGATGCGCGAACAGTTGGTGAAGTTCCGCACAATGCAGATTAATGGCTTGCGCGGCCTGCTTGCCGAGTACGGCGAAGTGACGGGCAAAGGCCGGGC
TGCGCTGGATAAGGCGATCCCCGGTGTACTGGAGCGACTGGTCGATCGTCTGCCGGCGATTCTGATCGACACGTTGCGCGAGCAATGGAACGGGTTGGCG
GAGCTAGATAAACAGATTGCGAGCATCGAGCGACGTCTGCAGACGTGGATGAGAGAGGACAAAGCGAGCAAAGCGATTGCGGCGATACCGGGCGTTGGTC
TGCTGACGGCGACGGCGGCTGTTGCGACGATAGGCGATGCGAAGACGTTCAAATCTGGGCGAGAGTTCGCGGCTTGGATTGGATTGGTTCCGAGGCAAAC
GGGTACGGGTGGCAAGGTGCATCTGCACGGAATCAGTAAGCGAGGCGATATATATCTACGCAAGCTGTTGATCCACGGTGCGCGCAGCGTGCTGTGTCTG
GCGAAAGAGCCAGGGCCGTGGGCCGAAGGAATCAAAAAGCGGCGACCGCTAAACGTAGCAATCGTGGCTCAGGCCAACAGGATTGCCCGCACGATCTGGG
CGATCCTGGCGCACGACAGGCAGTACGAACGGGGTTACCTGAGCGTGAAGCCGGTTTAACCGATGAGCACTGGGTAGCAGGACGATTAATTTTTACAGGA
TGACACGTCGAAAGGTTGCGCTGGCAATCGTATGTAATGACAAGACAGGTCGGACCGGGACTCGCTAAACCTGAATTTTCGGATGAGCTTCGAGCTCGCT
AAGGAAATGAGGTGCGGGTCCGCGGATTTCATGGTGGGCCGCAGCGTATCGGGCTGCAACAAGCCCGGATATAAAGCTGCAACCCCTCCTGTCACAGTCG
GAACACACGAAAAACCGTCGCAAACGGGAGGCGTTCATATA
AGACCATAGAGGTTTTCCTAGCAAACCGGAGGCTCCGAAATGAAGCATACGACAGTGGGTGTGGACATTGCAAAGAACGTGATGCAGCTCCATTACATCG
ACGCAGAGACGGGCGAAATCGTGAACAAACCGGTGAGACGGGGCGCGTTTCTCGAACACTTCGCGAATCTGGCTCCGTGCCTGGTCGGGATGGAGGCGTG
CGGTGGCTCACAGCACTGGGCCCGCAAGCTCACGACGATGGGCCACGAGGTGAAGCTGATGCCGGGGAAATTTGTGAAGGCGTTTGTGATGGGCAACAAA
AACGACGCAGCCGACGCGAAAGCCATCTGGCTAGCCGTGCAGCATGCAGGCAAATCGGTTGCGGTAAAGACGGAAACACAACAGGCGGTACTGGGACTGC
ACCGGATGCGCGAACAGTTGGTGAAGTTCCGCACAATGCAGATTAATGGCTTGCGCGGCCTGCTTGCCGAGTACGGCGAAGTGACGGGCAAAGGCCGGGC
TGCGCTGGATAAGGCGATCCCCGGTGTACTGGAGCGACTGGTCGATCGTCTGCCGGCGATTCTGATCGACACGTTGCGCGAGCAATGGAACGGGTTGGCG
GAGCTAGATAAACAGATTGCGAGCATCGAGCGACGTCTGCAGACGTGGATGAGAGAGGACAAAGCGAGCAAAGCGATTGCGGCGATACCGGGCGTTGGTC
TGCTGACGGCGACGGCGGCTGTTGCGACGATAGGCGATGCGAAGACGTTCAAATCTGGGCGAGAGTTCGCGGCTTGGATTGGATTGGTTCCGAGGCAAAC
GGGTACGGGTGGCAAGGTGCATCTGCACGGAATCAGTAAGCGAGGCGATATATATCTACGCAAGCTGTTGATCCACGGTGCGCGCAGCGTGCTGTGTCTG
GCGAAAGAGCCAGGGCCGTGGGCCGAAGGAATCAAAAAGCGGCGACCGCTAAACGTAGCAATCGTGGCTCAGGCCAACAGGATTGCCCGCACGATCTGGG
CGATCCTGGCGCACGACAGGCAGTACGAACGGGGTTACCTGAGCGTGAAGCCGGTTTAACCGATGAGCACTGGGTAGCAGGACGATTAATTTTTACAGGA
TGACACGTCGAAAGGTTGCGCTGGCAATCGTATGTAATGACAAGACAGGTCGGACCGGGACTCGCTAAACCTGAATTTTCGGATGAGCTTCGAGCTCGCT
AAGGAAATGAGGTGCGGGTCCGCGGATTTCATGGTGGGCCGCAGCGTATCGGGCTGCAACAAGCCCGGATATAAAGCTGCAACCCCTCCTGTCACAGTCG
GAACACACGAAAAACCGTCGCAAACGGGAGGCGTTCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1020 bp | 339 aa | 140 | 1159 | + | No |
Chemistry : DEDD
ORF sequence :
MKHTTVGVDIAKNVMQLHYIDAETGEIVNKPVRRGAFLEHFANLAPCLVGMEACGGSQHWARKLTTMGHEVKLMPGKFVKAFVMGNKNDAADAKAIWLAV
QHAGKSVAVKTETQQAVLGLHRMREQLVKFRTMQINGLRGLLAEYGEVTGKGRAALDKAIPGVLERLVDRLPAILIDTLREQWNGLAELDKQIASIERRL
QTWMREDKASKAIAAIPGVGLLTATAAVATIGDAKTFKSGREFAAWIGLVPRQTGTGGKVHLHGISKRGDIYLRKLLIHGARSVLCLAKEPGPWAEGIKK
RRPLNVAIVAQANRIARTIWAILAHDRQYERGYLSVKPV
QHAGKSVAVKTETQQAVLGLHRMREQLVKFRTMQINGLRGLLAEYGEVTGKGRAALDKAIPGVLERLVDRLPAILIDTLREQWNGLAELDKQIASIERRL
QTWMREDKASKAIAAIPGVGLLTATAAVATIGDAKTFKSGREFAAWIGLVPRQTGTGGKVHLHGISKRGDIYLRKLLIHGARSVLCLAKEPGPWAEGIKK
RRPLNVAIVAQANRIARTIWAILAHDRQYERGYLSVKPV
Blast result :
Comments
ISPfa1 is 85% aa similar to IS884.
There is an empty site in Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-2 (CP011519).
There is an empty site in Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-2 (CP011519).
References
1] ISfinder annotation (2018)
2] Yong,D., Ee,R., Lim,Y.-L., Yin,W.-F. and Chan,K.-G. (2016) Direct GenBank submission.
2] Yong,D., Ee,R., Lim,Y.-L., Yin,W.-F. and Chan,K.-G. (2016) Direct GenBank submission.