ISHsal10
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038631 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 |
DNA section
IS Length : 1055 bp
Ends
IR Length : 19/26
IRL : TAGTAACCGGTAGAACTTTTTACTCAGAGATAGTTGCAATAGCTAATGAA
IRR : TAGTAAACACTAGAAGTAATTGCTCACGTTAGGAACAGAGAGTTTGTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTCTGATATCC | TA | GGATACTGATCT | 2 |
DNA sequence
TAGTAACCGGTAGAACTTTTTACTCAGAGATAGTTGCAATAGCTAATGAATCATCTCGACGAGATCACCGTCGAGGAATTGCAAGACGCTCTCGACAACG
TGGACGGAAAGAAGCCGACACAACGGCTCTTAGCGGTAATCGCGTACAAGAATGGTGTCACGCAGACCGAGCTAGCCGAGTGGTACGACGTGCAGCGACG
GACAATCTACAGCTGGCTCAAGCGACTCGACACTGACGAGTCGCTTGAGCAAGCCGTTTCTGATGATAAACGAACTGGGAGAAAGCGTAAACTCTCAGAA
TCACAGCAGAAAGAATTCGAAGAAACCGTTCACGACCCACCGAGCGAGGTCGGGATCGACGCGCCGGCGTGGACGCCGGCGCTTGCTCAAGAGTATCTCG
AAGAAACATACGGCGCTGAGTATTCAATCCCGAGTTGTCGGCGGTTGCTGAAAGAAGCGGGATTGAGCTATCAAAAACCACGCTGTTCAGCCGCCGAAGC
CGATGAAGACGAGCAAGAAGCGTTCCACGACGAGCTCAAAAAAAGCGGCGGGAAATGGACGCCACCGTAGTCTGTATCGGCCAAACCAAGAAATCCGTCC
AAGTTGAGCCGCGTGCCGCGTGGTTTCCACAGGGCACGCGGCCCTCGGTCGAGCTTTCAGGCCAACGTGATTGGACGTGTCTACTGGGCGCGATCACCGA
GGACGGTGATCGCTTCTTCTCTCGGTTCACCGAGTACGTCACGGCCGAACACGCAAAGCATTTCATTTTAGCATTATGTGATGAATTCGAAGATGATTTG
ATCGTCGTGTTGGACGGAGCCCCGTATTTTCAGGCGTCGGCCGTCACGGACCTGGCAGCCCGTGACGACCTCGCCTTCGTGACGTTACCCTCGTATTCAC
CGGAGATGAATCCGGTCGAAGAATGCTGGAGACAGCTGCAAAAGGCACTAAGCAACCGATTCTTTGACTCACTCGACGAGCTAACAACAGCGATCGACAC
CGCTCTCGACAAACTCTCTGTTCCTAACGTGAGCAATTACTTCTAGTGTTTACTA
TGGACGGAAAGAAGCCGACACAACGGCTCTTAGCGGTAATCGCGTACAAGAATGGTGTCACGCAGACCGAGCTAGCCGAGTGGTACGACGTGCAGCGACG
GACAATCTACAGCTGGCTCAAGCGACTCGACACTGACGAGTCGCTTGAGCAAGCCGTTTCTGATGATAAACGAACTGGGAGAAAGCGTAAACTCTCAGAA
TCACAGCAGAAAGAATTCGAAGAAACCGTTCACGACCCACCGAGCGAGGTCGGGATCGACGCGCCGGCGTGGACGCCGGCGCTTGCTCAAGAGTATCTCG
AAGAAACATACGGCGCTGAGTATTCAATCCCGAGTTGTCGGCGGTTGCTGAAAGAAGCGGGATTGAGCTATCAAAAACCACGCTGTTCAGCCGCCGAAGC
CGATGAAGACGAGCAAGAAGCGTTCCACGACGAGCTCAAAAAAAGCGGCGGGAAATGGACGCCACCGTAGTCTGTATCGGCCAAACCAAGAAATCCGTCC
AAGTTGAGCCGCGTGCCGCGTGGTTTCCACAGGGCACGCGGCCCTCGGTCGAGCTTTCAGGCCAACGTGATTGGACGTGTCTACTGGGCGCGATCACCGA
GGACGGTGATCGCTTCTTCTCTCGGTTCACCGAGTACGTCACGGCCGAACACGCAAAGCATTTCATTTTAGCATTATGTGATGAATTCGAAGATGATTTG
ATCGTCGTGTTGGACGGAGCCCCGTATTTTCAGGCGTCGGCCGTCACGGACCTGGCAGCCCGTGACGACCTCGCCTTCGTGACGTTACCCTCGTATTCAC
CGGAGATGAATCCGGTCGAAGAATGCTGGAGACAGCTGCAAAAGGCACTAAGCAACCGATTCTTTGACTCACTCGACGAGCTAACAACAGCGATCGACAC
CGCTCTCGACAAACTCTCTGTTCCTAACGTGAGCAATTACTTCTAGTGTTTACTA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
525 bp | 174 aa | 46 | 570 | + | Yes |
Description : First part of the transposase
ORF sequence :
MNHLDEITVEELQDALDNVDGKKPTQRLLAVIAYKNGVTQTELAEWYDVQRRTIYSWLKRLDTDESLEQAVSDDKRTGRKRKLSESQQKEFEETVHDPPS
EVGIDAPAWTPALAQEYLEETYGAEYSIPSCRRLLKEAGLSYQKPRCSAAEADEDEQEAFHDELKKSGGKWTPP
EVGIDAPAWTPALAQEYLEETYGAEYSIPSCRRLLKEAGLSYQKPRCSAAEADEDEQEAFHDELKKSGGKWTPP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
540 bp | 179 aa | 507 | 1046 | + | No |
Description : Second part of the transposase
ORF sequence :
RRARSVPRRAQKKRREMDATVVCIGQTKKSVQVEPRAAWFPQGTRPSVELSGQRDWTCLLGAITEDGDRFFSRFTEYVTAEHAKHFILALCDEFEDDLIV
VLDGAPYFQASAVTDLAARDDLAFVTLPSYSPEMNPVEECWRQLQKALSNRFFDSLDELTTAIDTALDKLSVPNVSNYF
VLDGAPYFQASAVTDLAARDDLAFVTLPSYSPEMNPVEECWRQLQKALSNRFFDSLDELTTAIDTALDKLSVPNVSNYF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1001 bp | 333 aa | 46 | 1046 | + | Yes |
Chemistry : DDE
ORF sequence :
MNHLDEITVEELQDALDNVDGKKPTQRLLAVIAYKNGVTQTELAEWYDVQRRTIYSWLKRLDTDESLEQAVSDDKRTGRKRKLSESQQKEFEETVHDPPS
EVGIDAPAWTPALAQEYLEETYGAEYSIPSCRRLLKEAGLSYQKPRCSAAEADEDEQEAFHDELKKKRREMDATVVCIGQTKKSVQVEPRAAWFPQGTRP
SVELSGQRDWTCLLGAITEDGDRFFSRFTEYVTAEHAKHFILALCDEFEDDLIVVLDGAPYFQASAVTDLAARDDLAFVTLPSYSPEMNPVEECWRQLQK
ALSNRFFDSLDELTTAIDTALDKLSVPNVSNYF
EVGIDAPAWTPALAQEYLEETYGAEYSIPSCRRLLKEAGLSYQKPRCSAAEADEDEQEAFHDELKKKRREMDATVVCIGQTKKSVQVEPRAAWFPQGTRP
SVELSGQRDWTCLLGAITEDGDRFFSRFTEYVTAEHAKHFILALCDEFEDDLIVVLDGAPYFQASAVTDLAARDDLAFVTLPSYSPEMNPVEECWRQLQK
ALSNRFFDSLDELTTAIDTALDKLSVPNVSNYF
Blast result :
Comments
ISHsal10 is 96% aa similar to ISHvo16.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).