ISHsal2
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038631 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 |
DNA section
IS Length : 1399 bp
Ends
IR Length : 16
IRL : CAGTACCTCACAAAGCTGGTTAGTGAGAACGTCTGCTTGCTGATGGTGTG
IRR : CAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGCGGCCTGAGTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCACAAGGTC | ATACT | CGCGGGCGTAGT | 5 |
AACAGTTCAGTG | ACGAT | ACAGACCTAGAC | 5 |
DNA sequence
CAGTACCTCACAAAGCTGGTTAGTGAGAACGTCTGCTTGCTGATGGTGTGTCTAGAACCAAGCAAGCAGACAGTGAGATCCACGAAGACCAGCTCCTTAA
CTTCCTCGTCAACCAGCTTGACGAGGAAGTTTCTCTCGGCCTTGCGAACAACGCTGAAATCGAACCTGAGGACATCTACGAGGTCCTCGTCGGCGCTTGC
GCCGACGGGACCTCGGTCTCGACGCTCTGTGAGAGAAGCGAAGATTCACCGCCTGCAAACACGGTCCTGTACCATCTGCGGACGAAGTTCGAGCTCGACT
GGCTCGAACGAGTCGCTAACACGCTCCTTCGGCGAGATATCGTCGAATTGCTCCCTGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGACGAAGACGACACAGACGGCCTCTATCGCTCCGAGGCCAAGCGTGGAACCACCGCGTTCCACGCCTACGCGACACTCTACGCGCGTGTGAAGAAC
AAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGCGTCCTCGCGGAGTTCCTCGGACTGCTTGACGGCCTTGACTTTGGTG
TCAAGGCCGTCTACCTCGATCGCGGCTTCTACGACAGCAAGTGTCTCACGCTCCTCCAAGCGCACAACTACGCGTACGTAATCCCGATCATCCGGTGGGG
AAAGACGATTCAGCAGGAACTCTCGAACGGCTGGAGTCGCGTCATTCAACATGACCTGACAGGGACACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCCACATCGACTGTACGTACCTGAACGGGAAGTATGACGAGAATGGGGTGGCACGTCACGGCTACGCCGCTGACGCGCCGTTTATTGACTCACCACGCG
ACGCTCGATACCACTACAGCAAACGCTTCGGTATCGAGTCGAGCTATCGCTTGTCCGAGCAAGCGATAGCGACAACAACGACGCGAGACGCAACGGTGAG
ACTGCTGTACGTCGTGGTGAGTCTGTTGTTACAGAACGCGTGGCGGTATCTCCACTACGAATACGTGGCGACGCCCCGCCGGGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCATCAATATGATTCGACGTGCTGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAATCGGCCACCTGACGACC
GATTCGATCGCTAACCACCGACCAAGCAAGCCAGCGGAGTGAGTGGCGACGCTGTCGCGTCGGCGGCTGACCGCCGCCGACAGCGACAGCTCTCCATCGA
CCCGTCCGTGATTCTCTCGTCGAGACCGTCAGCACACCCGTCTCGACACAGAACTCAGGCCGCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTACTG
CTTCCTCGTCAACCAGCTTGACGAGGAAGTTTCTCTCGGCCTTGCGAACAACGCTGAAATCGAACCTGAGGACATCTACGAGGTCCTCGTCGGCGCTTGC
GCCGACGGGACCTCGGTCTCGACGCTCTGTGAGAGAAGCGAAGATTCACCGCCTGCAAACACGGTCCTGTACCATCTGCGGACGAAGTTCGAGCTCGACT
GGCTCGAACGAGTCGCTAACACGCTCCTTCGGCGAGATATCGTCGAATTGCTCCCTGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGACGAAGACGACACAGACGGCCTCTATCGCTCCGAGGCCAAGCGTGGAACCACCGCGTTCCACGCCTACGCGACACTCTACGCGCGTGTGAAGAAC
AAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGCGTCCTCGCGGAGTTCCTCGGACTGCTTGACGGCCTTGACTTTGGTG
TCAAGGCCGTCTACCTCGATCGCGGCTTCTACGACAGCAAGTGTCTCACGCTCCTCCAAGCGCACAACTACGCGTACGTAATCCCGATCATCCGGTGGGG
AAAGACGATTCAGCAGGAACTCTCGAACGGCTGGAGTCGCGTCATTCAACATGACCTGACAGGGACACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCCACATCGACTGTACGTACCTGAACGGGAAGTATGACGAGAATGGGGTGGCACGTCACGGCTACGCCGCTGACGCGCCGTTTATTGACTCACCACGCG
ACGCTCGATACCACTACAGCAAACGCTTCGGTATCGAGTCGAGCTATCGCTTGTCCGAGCAAGCGATAGCGACAACAACGACGCGAGACGCAACGGTGAG
ACTGCTGTACGTCGTGGTGAGTCTGTTGTTACAGAACGCGTGGCGGTATCTCCACTACGAATACGTGGCGACGCCCCGCCGGGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCATCAATATGATTCGACGTGCTGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAATCGGCCACCTGACGACC
GATTCGATCGCTAACCACCGACCAAGCAAGCCAGCGGAGTGAGTGGCGACGCTGTCGCGTCGGCGGCTGACCGCCGCCGACAGCGACAGCTCTCCATCGA
CCCGTCCGTGATTCTCTCGTCGAGACCGTCAGCACACCCGTCTCGACACAGAACTCAGGCCGCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 48 | 1214 | + | No |
Chemistry : DDE
ORF sequence :
MSRTKQADSEIHEDQLLNFLVNQLDEEVSLGLANNAEIEPEDIYEVLVGACADGTSVSTLCERSEDSPPANTVLYHLRTKFELDWLERVANTLLRRDIVE
LLPEQVEVCADLHLRPYYGDEDDTDGLYRSEAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGLLDGLDFGVKAVYLDRGFYDSKCL
TLLQAHNYAYVIPIIRWGKTIQQELSNGWSRVIQHDLTGTLDGHSWTVEFPVHIDCTYLNGKYDENGVARHGYAADAPFIDSPRDARYHYSKRFGIESSY
RLSEQAIATTTTRDATVRLLYVVVSLLLQNAWRYLHYEYVATPRRGGRRLWWWPYKEFINMIRRAAWTALAVRRAVPANRPPDDRFDR
LLPEQVEVCADLHLRPYYGDEDDTDGLYRSEAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGLLDGLDFGVKAVYLDRGFYDSKCL
TLLQAHNYAYVIPIIRWGKTIQQELSNGWSRVIQHDLTGTLDGHSWTVEFPVHIDCTYLNGKYDENGVARHGYAADAPFIDSPRDARYHYSKRFGIESSY
RLSEQAIATTTTRDATVRLLYVVVSLLLQNAWRYLHYEYVATPRRGGRRLWWWPYKEFINMIRRAAWTALAVRRAVPANRPPDDRFDR
Blast result :
Comments
ISHsal2 is 94% aa similar to ISHla1.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).