ISHsal1
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP038631 | ND | Halobacterium salinarum | Halobacterium salinarum DSM 3754 Halobacterium salinarum 91-R6 |
DNA section
IS Length : 1389 bp
Ends
IR Length : 22/28
IRL : CAGTACATCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTG
IRR : CAGTACCTCACAAAGCATCGCCAGTTAGCCTGACCTGAGCCATCTGTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAACGAGGATGGATTCT | AGTCTCAGTGAACATCC | 0 | |
TACTCGGTGGCA | AGTTT | GGTGCGGTCATC | 5 |
AGATTTATACAC | AATCT | GGCTTGAAGACG | 5 |
CAGGGAGAATAC | ATTAT | GGTCGTCGTGAT | 0 |
TCCTCTGTCTGG | ATACT | CGGTTCGGCGGC | 0 |
DNA sequence
CAGTACATCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTGTCTACGACCCAGCAAGCAGACAGTGAGATTCACGAGGACCAGCTTCTTAA
CTTTCTCGTCAACACCCTTGAGGAGGAAGTTCCGCTTTCCTTAGCCAATAACGCTGAAATCACTACTGAGGGCATCTATGAGGTCCTCGTCGGCGCTTGC
GCCGACGGGACCTCTGTCTCTACGCTCTGTGCGTCGAGTCAGAACGGCCCCGCTGCCAACACGATCCTCTACCATCTCCGGACGAAGTTCGAGCCCAAAC
GGCTCGAACGAGTCGCTAACACGCTTCTTCGACGAGATATCGTCGAACTGCTTCCTGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGATGAAGACGACACGGAGAACCTCTATCACTCGGAAGCCAAGCGTGGAACCACCGCATTCCACGCCTACGCCACACTCTACGCGCGTGTGAAGAAC
AAACGATATACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCTGAGTTTCTTGGTGTACTCGACGGCCTTGACGCCGATG
TCAAGGCCGTCTACCTTGATCGCGGATTCTACGACAGCAAGTGTCTCACGCTGTTGCAGGCGCACAACTACGCCTACGTGGTCCCGATCATTCAGTGGGG
GAAGACGATTCAGCAGGAACTTGCGGAAGGGTGGAGTCGCGTCATTCAACACGATCTGACGGGGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACGTACCTGAACGGACGGTACGACGACCACGGTGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTTATCGAGACACCACGCC
AGGCTCGATACCATTACTCGAAACGCTTCGGTATCGAGTCAAGCTATCGCTTGTCCGAGCAAGCGATAGCGACGACAACGACGCGAAACGCGACGGTGAG
ACTTCTGTACGTTGTGGTGAGTCTGCTCTTGCAGAATGCGTGGCGGTATCTGCACTACGAATACGTGGCGACGCCGCGCCGAGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCGTGAATATGGTTCGGCGGGCTGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAATCGGCCACCTGACGACC
GGTTCCACCGGTAGTCACCGACCGAGCAAGCTCCCTTCAGGAGTGGCAACGCTGTCGCGTCGGCGGCTGACTGCCGCCGACAGCGACAGCTCCCTCTTCG
ATCAGCGTTGCTCGACCGTTACTGACGACTCATCACAACAGAACAGATGGCTCAGGTCAGGCTAACTGGCGATGCTTTGTGAGGTACTG
CTTTCTCGTCAACACCCTTGAGGAGGAAGTTCCGCTTTCCTTAGCCAATAACGCTGAAATCACTACTGAGGGCATCTATGAGGTCCTCGTCGGCGCTTGC
GCCGACGGGACCTCTGTCTCTACGCTCTGTGCGTCGAGTCAGAACGGCCCCGCTGCCAACACGATCCTCTACCATCTCCGGACGAAGTTCGAGCCCAAAC
GGCTCGAACGAGTCGCTAACACGCTTCTTCGACGAGATATCGTCGAACTGCTTCCTGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGATGAAGACGACACGGAGAACCTCTATCACTCGGAAGCCAAGCGTGGAACCACCGCATTCCACGCCTACGCCACACTCTACGCGCGTGTGAAGAAC
AAACGATATACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCTGAGTTTCTTGGTGTACTCGACGGCCTTGACGCCGATG
TCAAGGCCGTCTACCTTGATCGCGGATTCTACGACAGCAAGTGTCTCACGCTGTTGCAGGCGCACAACTACGCCTACGTGGTCCCGATCATTCAGTGGGG
GAAGACGATTCAGCAGGAACTTGCGGAAGGGTGGAGTCGCGTCATTCAACACGATCTGACGGGGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACGTACCTGAACGGACGGTACGACGACCACGGTGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTTATCGAGACACCACGCC
AGGCTCGATACCATTACTCGAAACGCTTCGGTATCGAGTCAAGCTATCGCTTGTCCGAGCAAGCGATAGCGACGACAACGACGCGAAACGCGACGGTGAG
ACTTCTGTACGTTGTGGTGAGTCTGCTCTTGCAGAATGCGTGGCGGTATCTGCACTACGAATACGTGGCGACGCCGCGCCGAGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCGTGAATATGGTTCGGCGGGCTGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAATCGGCCACCTGACGACC
GGTTCCACCGGTAGTCACCGACCGAGCAAGCTCCCTTCAGGAGTGGCAACGCTGTCGCGTCGGCGGCTGACTGCCGCCGACAGCGACAGCTCCCTCTTCG
ATCAGCGTTGCTCGACCGTTACTGACGACTCATCACAACAGAACAGATGGCTCAGGTCAGGCTAACTGGCGATGCTTTGTGAGGTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 48 | 1214 | + | No |
Chemistry : DDE
ORF sequence :
MSTTQQADSEIHEDQLLNFLVNTLEEEVPLSLANNAEITTEGIYEVLVGACADGTSVSTLCASSQNGPAANTILYHLRTKFEPKRLERVANTLLRRDIVE
LLPEQVEVCADLHLRPYYGDEDDTENLYHSEAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGVLDGLDADVKAVYLDRGFYDSKCL
TLLQAHNYAYVVPIIQWGKTIQQELAEGWSRVIQHDLTGKLDGHSWTVEFPVYIDCTYLNGRYDDHGVARHGYAADAPFIETPRQARYHYSKRFGIESSY
RLSEQAIATTTTRNATVRLLYVVVSLLLQNAWRYLHYEYVATPRRGGRRLWWWPYKEFVNMVRRAAWTALAVRRAVPANRPPDDRFHR
LLPEQVEVCADLHLRPYYGDEDDTENLYHSEAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGVLDGLDADVKAVYLDRGFYDSKCL
TLLQAHNYAYVVPIIQWGKTIQQELAEGWSRVIQHDLTGKLDGHSWTVEFPVYIDCTYLNGRYDDHGVARHGYAADAPFIETPRQARYHYSKRFGIESSY
RLSEQAIATTTTRNATVRLLYVVVSLLLQNAWRYLHYEYVATPRRGGRRLWWWPYKEFVNMVRRAAWTALAVRRAVPANRPPDDRFHR
Blast result :
Comments
ISHsal1 is 96% aa similar to ISH3C.
References
1] Pfeiffer F., Marchfelder A., Habermann BH., Dyall-Smith M. (2018) Direct submission.
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).
2] Pfeiffer F, Marchfelder A, Habermann B, Dyall-Smith ML. (2019) Microbiol Resour Announc. 11;8(28).