ISHahy13
- Family ISNCY
- Group IS1202
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002304 | ND | Halanaerobium hydrogeniformans | Halanaerobium hydrogeniformans |
DNA section
IS Length : 1497 bp
Ends
IR Length : 19/24
IRL : TGTGATTATCTTGTGATAATGTCATAGTGAAATTATCTTGATAAAATGTC
IRR : TGTCAATAACTTTTGAAAATGTCACTTTTTTATACCAATTTTATCTTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTATATATATAATACAATATATTTAGTATTTTGTCAA | GGATATAATGAAATTAT | TTGAATTAGTTTACAATAATGATTGATAACAACAATCA | 17 |
ACTAAGTATATTATAGCATTTAATATTTTAAATGTAAA | GAAAAACATAAAAAAAA | TCCCTTTCTAATGGAACAGATTTTTATTATTCAATCTG | 17 |
ATTAAATTGATTATATCGTAATAATCTTCCTTTGTCAA | AATTATTAGACACTTTT | ATAAACGGGATTTTATTTTTTTATAAGATCAGATTATC | 17 |
TGATTCGAAATTATATCACCGTTTAAAATATTTGGCAA | TAGGATTTTTTTGTCCA | GAAAAATAAAAAAAGACTCCTTCTTATGACTGGCATAG | 17 |
DNA sequence
TGTGATTATCTTGTGATAATGTCATAGTGAAATTATCTTGATAAAATGTCACTATGAGAGGAGAAAAATATTATCTTATGTCCCAAACACAATTGAATAG
GTATCATGTCATTTCTATGGTCATTGATAAAAGTATGACCAACTCAGAAGCTGCACAGGCTTTAGACCTTAGTGTTCGCCAAATAATTCGTTTGAAGAAA
GGTGTGAAAAAAGAAGGTCCATCATTTTTAGTTCATAAAAATAAAGGTCGTAAACCTAGTCATGCTTTTTCTGAGGATTTCGTCAGTAAAATTGTTGCCC
TGAAAAAATCAGACTCGTATCAAAGTGCTAACTTCATGCATTTTCAAGAATTACTAGAAGAACATGAAAACATCACCATTAGTTACAACGCACTTCACAC
TATTTTAAGCAGCAATGGTGTCAAAAGTCCCAAAAAGCATCGCAAAAAGAAAGTTCATCACCGTCGTAAACGCAAAGCAAAAGAAGGCCAATTAATCCAA
ATTGATGCCAGTCCACACGACTGGTTTGGTACTGGAGAGAAATATGACATTCATGGTGCCATAGATGATTCTACCGGTAAAATAATGGGCCTTTACATGA
CTAAAAACGAGTGCCGACAGGGATATTTTGAAACTTTAAGATCTGTGGTCTTAAATTATGGTATACCCGTCAGTATTTATACCGATAGACATACTATCTT
CCGTTCACCTAAGGCAGACAAACTTACAATTGAAGAACAACTTGCTGGTAAAACTGTTAAAGATACTCAGTTTGGAAGAGCCATGAAAGAACTTGGAATT
ACTATGATCCCTGCACGCTCACCGCAAGCTAAAGGCCGTATTGAAAGATTATGGGATACTCTCCAAAGCAGACTGCCTGTTGAATTTAAGATAGCAGGTA
TATCCACTATCGAGCAGGCTAATGAGTTTTTTGCTGACTACTTAATCAAATTTAATGAAAAATTTGCTGTAGCACCTGAAGACACCATTTGCGCTTTTAG
AACTCTTCCTGAAGAAATTTGTATAGATAATATACTTTGCGTTAAGGAAGAAAGAATACTTGATAATGGACTAACTTTTTCTTTTTATAATCAGCGCTTC
AAGGTCGTTACTAATAGTATGTCAGTCTATCCAAAATCGAAAATCAAAGTTCTTCTTAGTCCTAAATTCGGTGTGAAAGCACAATATGGTGAAAAAATTT
ATGATGTTATCCATTGGACTGAACATAAAAAATCAAAAGTTAAAAAGAGTAAAACTAATTCTAATAACAAATACAGACCAGACGATGGGCATTATTATAA
ATATGGACATCAAGCCTGGCCAAAAGTAACTTTTGAAGACAGTGATCACGATATACTGAAAATGCTGGAAAAAATATTTCTCACTCAAATTGCCTGATAT
GTTTGGTTTAAACCCCAAACATATCTCCCCTTTGGGGGTGACATTTTCTCAAGATAAAATTGGTATAAAAAAGTGACATTTTCAAAAGTTATTGACA
GTATCATGTCATTTCTATGGTCATTGATAAAAGTATGACCAACTCAGAAGCTGCACAGGCTTTAGACCTTAGTGTTCGCCAAATAATTCGTTTGAAGAAA
GGTGTGAAAAAAGAAGGTCCATCATTTTTAGTTCATAAAAATAAAGGTCGTAAACCTAGTCATGCTTTTTCTGAGGATTTCGTCAGTAAAATTGTTGCCC
TGAAAAAATCAGACTCGTATCAAAGTGCTAACTTCATGCATTTTCAAGAATTACTAGAAGAACATGAAAACATCACCATTAGTTACAACGCACTTCACAC
TATTTTAAGCAGCAATGGTGTCAAAAGTCCCAAAAAGCATCGCAAAAAGAAAGTTCATCACCGTCGTAAACGCAAAGCAAAAGAAGGCCAATTAATCCAA
ATTGATGCCAGTCCACACGACTGGTTTGGTACTGGAGAGAAATATGACATTCATGGTGCCATAGATGATTCTACCGGTAAAATAATGGGCCTTTACATGA
CTAAAAACGAGTGCCGACAGGGATATTTTGAAACTTTAAGATCTGTGGTCTTAAATTATGGTATACCCGTCAGTATTTATACCGATAGACATACTATCTT
CCGTTCACCTAAGGCAGACAAACTTACAATTGAAGAACAACTTGCTGGTAAAACTGTTAAAGATACTCAGTTTGGAAGAGCCATGAAAGAACTTGGAATT
ACTATGATCCCTGCACGCTCACCGCAAGCTAAAGGCCGTATTGAAAGATTATGGGATACTCTCCAAAGCAGACTGCCTGTTGAATTTAAGATAGCAGGTA
TATCCACTATCGAGCAGGCTAATGAGTTTTTTGCTGACTACTTAATCAAATTTAATGAAAAATTTGCTGTAGCACCTGAAGACACCATTTGCGCTTTTAG
AACTCTTCCTGAAGAAATTTGTATAGATAATATACTTTGCGTTAAGGAAGAAAGAATACTTGATAATGGACTAACTTTTTCTTTTTATAATCAGCGCTTC
AAGGTCGTTACTAATAGTATGTCAGTCTATCCAAAATCGAAAATCAAAGTTCTTCTTAGTCCTAAATTCGGTGTGAAAGCACAATATGGTGAAAAAATTT
ATGATGTTATCCATTGGACTGAACATAAAAAATCAAAAGTTAAAAAGAGTAAAACTAATTCTAATAACAAATACAGACCAGACGATGGGCATTATTATAA
ATATGGACATCAAGCCTGGCCAAAAGTAACTTTTGAAGACAGTGATCACGATATACTGAAAATGCTGGAAAAAATATTTCTCACTCAAATTGCCTGATAT
GTTTGGTTTAAACCCCAAACATATCTCCCCTTTGGGGGTGACATTTTCTCAAGATAAAATTGGTATAAAAAAGTGACATTTTCAAAAGTTATTGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1320 bp | 447 aa | 78 | 1397 | + | No |
Chemistry : DDE
ORF sequence :
MSQTQLNRYHVISMVIDKSMTNSEAAQALDLSVRQIIRLKKGVKKEGPSFLVHKNKGRKPSHAFSEDFVSKIVALKKSDSYQSANFMHFQELLEEHENIT
ISYNALHTILSSNGVKSPKKHRKKKVHHRRKRKAKEGQLIQIDASPHDWFGTGEKYDIHGAIDDSTGKIMGLYMTKNECRQGYFETLRSVVLNYGIPVSI
YTDRHTIFRSPKADKLTIEEQLAGKTVKDTQFGRAMKELGITMIPARSPQAKGRIERLWDTLQSRLPVEFKIAGISTIEQANEFFADYLIKFNEKFAVAP
EDTICAFRTLPEEICIDNILCVKEERILDNGLTFSFYNQRFKVVTNSMSVYPKSKIKVLLSPKFGVKAQYGEKIYDVIHWTEHKKSKVKKSKTNSNNKYR
PDDGHYYKYGHQAWPKVTFEDSDHDILKMLEKIFLTQIA
ISYNALHTILSSNGVKSPKKHRKKKVHHRRKRKAKEGQLIQIDASPHDWFGTGEKYDIHGAIDDSTGKIMGLYMTKNECRQGYFETLRSVVLNYGIPVSI
YTDRHTIFRSPKADKLTIEEQLAGKTVKDTQFGRAMKELGITMIPARSPQAKGRIERLWDTLQSRLPVEFKIAGISTIEQANEFFADYLIKFNEKFAVAP
EDTICAFRTLPEEICIDNILCVKEERILDNGLTFSFYNQRFKVVTNSMSVYPKSKIKVLLSPKFGVKAQYGEKIYDVIHWTEHKKSKVKKSKTNSNNKYR
PDDGHYYKYGHQAWPKVTFEDSDHDILKMLEKIFLTQIA
Blast result :
Comments
ISHahy13 is 48% aa similar to IS1202.
References
1] Bassett K. (2018) Direct Submission.
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683