ISHahy13

  • Family ISNCY
  • Group IS1202
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002304 ND Halanaerobium hydrogeniformans
Halanaerobium hydrogeniformans
DNA section
IS Length : 1497 bp

Ends


IR Length : 19/24

IRL : TGTGATTATCTTGTGATAATGTCATAGTGAAATTATCTTGATAAAATGTC
IRR : TGTCAATAACTTTTGAAAATGTCACTTTTTTATACCAATTTTATCTTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
TCTATATATATAATACAATATATTTAGTATTTTGTCAAGGATATAATGAAATTATTTGAATTAGTTTACAATAATGATTGATAACAACAATCA17
ACTAAGTATATTATAGCATTTAATATTTTAAATGTAAAGAAAAACATAAAAAAAATCCCTTTCTAATGGAACAGATTTTTATTATTCAATCTG17
ATTAAATTGATTATATCGTAATAATCTTCCTTTGTCAAAATTATTAGACACTTTTATAAACGGGATTTTATTTTTTTATAAGATCAGATTATC17
TGATTCGAAATTATATCACCGTTTAAAATATTTGGCAATAGGATTTTTTTGTCCAGAAAAATAAAAAAAGACTCCTTCTTATGACTGGCATAG17

DNA sequence

TGTGATTATCTTGTGATAATGTCATAGTGAAATTATCTTGATAAAATGTCACTATGAGAGGAGAAAAATATTATCTTATGTCCCAAACACAATTGAATAG
GTATCATGTCATTTCTATGGTCATTGATAAAAGTATGACCAACTCAGAAGCTGCACAGGCTTTAGACCTTAGTGTTCGCCAAATAATTCGTTTGAAGAAA
GGTGTGAAAAAAGAAGGTCCATCATTTTTAGTTCATAAAAATAAAGGTCGTAAACCTAGTCATGCTTTTTCTGAGGATTTCGTCAGTAAAATTGTTGCCC
TGAAAAAATCAGACTCGTATCAAAGTGCTAACTTCATGCATTTTCAAGAATTACTAGAAGAACATGAAAACATCACCATTAGTTACAACGCACTTCACAC
TATTTTAAGCAGCAATGGTGTCAAAAGTCCCAAAAAGCATCGCAAAAAGAAAGTTCATCACCGTCGTAAACGCAAAGCAAAAGAAGGCCAATTAATCCAA
ATTGATGCCAGTCCACACGACTGGTTTGGTACTGGAGAGAAATATGACATTCATGGTGCCATAGATGATTCTACCGGTAAAATAATGGGCCTTTACATGA
CTAAAAACGAGTGCCGACAGGGATATTTTGAAACTTTAAGATCTGTGGTCTTAAATTATGGTATACCCGTCAGTATTTATACCGATAGACATACTATCTT
CCGTTCACCTAAGGCAGACAAACTTACAATTGAAGAACAACTTGCTGGTAAAACTGTTAAAGATACTCAGTTTGGAAGAGCCATGAAAGAACTTGGAATT
ACTATGATCCCTGCACGCTCACCGCAAGCTAAAGGCCGTATTGAAAGATTATGGGATACTCTCCAAAGCAGACTGCCTGTTGAATTTAAGATAGCAGGTA
TATCCACTATCGAGCAGGCTAATGAGTTTTTTGCTGACTACTTAATCAAATTTAATGAAAAATTTGCTGTAGCACCTGAAGACACCATTTGCGCTTTTAG
AACTCTTCCTGAAGAAATTTGTATAGATAATATACTTTGCGTTAAGGAAGAAAGAATACTTGATAATGGACTAACTTTTTCTTTTTATAATCAGCGCTTC
AAGGTCGTTACTAATAGTATGTCAGTCTATCCAAAATCGAAAATCAAAGTTCTTCTTAGTCCTAAATTCGGTGTGAAAGCACAATATGGTGAAAAAATTT
ATGATGTTATCCATTGGACTGAACATAAAAAATCAAAAGTTAAAAAGAGTAAAACTAATTCTAATAACAAATACAGACCAGACGATGGGCATTATTATAA
ATATGGACATCAAGCCTGGCCAAAAGTAACTTTTGAAGACAGTGATCACGATATACTGAAAATGCTGGAAAAAATATTTCTCACTCAAATTGCCTGATAT
GTTTGGTTTAAACCCCAAACATATCTCCCCTTTGGGGGTGACATTTTCTCAAGATAAAATTGGTATAAAAAAGTGACATTTTCAAAAGTTATTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1320 bp447 aa781397+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQTQLNRYHVISMVIDKSMTNSEAAQALDLSVRQIIRLKKGVKKEGPSFLVHKNKGRKPSHAFSEDFVSKIVALKKSDSYQSANFMHFQELLEEHENIT
ISYNALHTILSSNGVKSPKKHRKKKVHHRRKRKAKEGQLIQIDASPHDWFGTGEKYDIHGAIDDSTGKIMGLYMTKNECRQGYFETLRSVVLNYGIPVSI
YTDRHTIFRSPKADKLTIEEQLAGKTVKDTQFGRAMKELGITMIPARSPQAKGRIERLWDTLQSRLPVEFKIAGISTIEQANEFFADYLIKFNEKFAVAP
EDTICAFRTLPEEICIDNILCVKEERILDNGLTFSFYNQRFKVVTNSMSVYPKSKIKVLLSPKFGVKAQYGEKIYDVIHWTEHKKSKVKKSKTNSNNKYR
PDDGHYYKYGHQAWPKVTFEDSDHDILKMLEKIFLTQIA

 

Blast result :
Comments
ISHahy13 is 48% aa similar to IS1202.
References
1] Bassett K. (2018) Direct Submission.
2] Brown S.D., Begemann M.B., Mormile M.R., Wall J.D., Han C.S., Goodwin L.A., Pitluck S., Land M.L., Hauser L.J. and Elias D.A. (2011) J. Bacteriol. 193, 3682-3683