ISButh3
- Family IS256
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NBSP01000002 | ND | Burkholderia thailandensis | Burkholderia thailandensis FDAARGOS_244 |
DNA section
IS Length : 1348 bp
Ends
IR Length : 15/19
IRL : GATTTTTAGTGTGCTGAGGTCATGAGACGATAACGGAACTAACGTCCTAT
IRR : GAATTTCGTGTGCTGAGGCCGGTTAAAGGTCTCAGTTGATGGCGGAGGTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTCGCCGAGC | CTGT/ACA | CGTCCTGCTCGCC | 6 |
DNA sequence
GATTTTTAGTGTGCTGAGGTCATGAGACGATAACGGAACTAACGTCCTATGACCGATGCAACAGTGAGCAAGAAGAGCAAGAATCCGAAGGCACCAAAGC
TGTTTCCCGATGAGCTGATCGATCAGTTGCTTGCCCAGGTTCAGGGCAAGGATGCCGAGTCGATCCTGGGCGAATCGGGGCTGGCCGGCCAGCTCAAGAA
GCAACTGGCCGAGCGCATGCTCGCGGCCGAGTTGAGCCACCATCTGGCAGCCGAGACCGAGCAAGGCAGGGCCGGTAACCACCGCAACGGCACCAGCCCC
AAGACGGTCCTGACGCCCAACGGCGAACTGAAGCTGGATATTCCGCGCGATCGACAGGCGACGTTTGAGCCGCAGTTGGTTGGCAAGTACCAACGCCGGC
TGCCAGGCTTCGACGACCACGTGATCAGCATGTATGCGCGCGGCATGAGCGTTCGCGAGATTCAGGGCCATCTGCTGGAACTGTACGGGTTGCAGGTGTC
GCCCGACCTGATTTCGACGGTCACCGACGAGGTGCTGGCCGACGTCGAACAGTGGCAGCAGCGCCCGCTCGAGGCCATGTATCCGATTGTGTACTTCGAC
GCGCTGCGGCTGAAGATCCGCGACGAAGGCACGGTCAAGAACAAGGCGGTCTATCTGGCGCTGGGCATCCGCGCCGACGGCCGCAAGGAAGTACTGGGTT
TGTGGATCGAGCAAACCGAAGGCGCCAAGTTCTGGCTGAAGGTCTTCAACGAGCTGAAGAACCGCGGCTTGCACGACATCCTGATCGCGGTGGTCGATGG
GTTGCGCGGCTTCCCCGAAGCGATCGAGGCGGTCTATCCGGCCGCCCAAATCCAGACCTGCATCGTGCATCTGATCCGCAATTCGCTGAATCTGGCGAGC
TGGAAGGATCGCAAGCCGCTGGCTGCCGCGATCAAGCCGATCTACCAGGCCGCCACGGCCGAGGCGGCGGCAGCGGCGCTCGACGCCTTTGCGCAGAGCG
AGTGGGGCCGCAAATTCCCTACCGTCGCGGCCATGTGGCAGCGCCAATGGGAACAGGTGATTCCCTTCTTTGCCTATCCGCCCGAGGTGCGTCGAATCGT
ATATACGACAAACGCTATCGAGAGCATGCACATGCAGTTGCGCAAGATCGTCAAGAACCGCGGCCACTTCCCGAGCGACGAAGCCGCCAGCAAACTGCTG
TATCTGGCCTTGCGCAACATCGAAAAGGATTGGAAGATGCCGCCTATCACTTGGCGGCAAGCAGTTAATCAGTTCGCCATTCTGTTCGGCGAGCGATTCA
CCTCCGCCATCAACTGAGACCTTTAACCGGCCTCAGCACACGAAATTC
TGTTTCCCGATGAGCTGATCGATCAGTTGCTTGCCCAGGTTCAGGGCAAGGATGCCGAGTCGATCCTGGGCGAATCGGGGCTGGCCGGCCAGCTCAAGAA
GCAACTGGCCGAGCGCATGCTCGCGGCCGAGTTGAGCCACCATCTGGCAGCCGAGACCGAGCAAGGCAGGGCCGGTAACCACCGCAACGGCACCAGCCCC
AAGACGGTCCTGACGCCCAACGGCGAACTGAAGCTGGATATTCCGCGCGATCGACAGGCGACGTTTGAGCCGCAGTTGGTTGGCAAGTACCAACGCCGGC
TGCCAGGCTTCGACGACCACGTGATCAGCATGTATGCGCGCGGCATGAGCGTTCGCGAGATTCAGGGCCATCTGCTGGAACTGTACGGGTTGCAGGTGTC
GCCCGACCTGATTTCGACGGTCACCGACGAGGTGCTGGCCGACGTCGAACAGTGGCAGCAGCGCCCGCTCGAGGCCATGTATCCGATTGTGTACTTCGAC
GCGCTGCGGCTGAAGATCCGCGACGAAGGCACGGTCAAGAACAAGGCGGTCTATCTGGCGCTGGGCATCCGCGCCGACGGCCGCAAGGAAGTACTGGGTT
TGTGGATCGAGCAAACCGAAGGCGCCAAGTTCTGGCTGAAGGTCTTCAACGAGCTGAAGAACCGCGGCTTGCACGACATCCTGATCGCGGTGGTCGATGG
GTTGCGCGGCTTCCCCGAAGCGATCGAGGCGGTCTATCCGGCCGCCCAAATCCAGACCTGCATCGTGCATCTGATCCGCAATTCGCTGAATCTGGCGAGC
TGGAAGGATCGCAAGCCGCTGGCTGCCGCGATCAAGCCGATCTACCAGGCCGCCACGGCCGAGGCGGCGGCAGCGGCGCTCGACGCCTTTGCGCAGAGCG
AGTGGGGCCGCAAATTCCCTACCGTCGCGGCCATGTGGCAGCGCCAATGGGAACAGGTGATTCCCTTCTTTGCCTATCCGCCCGAGGTGCGTCGAATCGT
ATATACGACAAACGCTATCGAGAGCATGCACATGCAGTTGCGCAAGATCGTCAAGAACCGCGGCCACTTCCCGAGCGACGAAGCCGCCAGCAAACTGCTG
TATCTGGCCTTGCGCAACATCGAAAAGGATTGGAAGATGCCGCCTATCACTTGGCGGCAAGCAGTTAATCAGTTCGCCATTCTGTTCGGCGAGCGATTCA
CCTCCGCCATCAACTGAGACCTTTAACCGGCCTCAGCACACGAAATTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1200 bp | 399 aa | 118 | 1317 | + | No |
Chemistry : DDE
ORF sequence :
MDQLLAQVQGKDAESILGESGLAGQLKKQLAERMLAAELSHHLAAETEQGRAGNHRNGTSPKTVLTPNGELKLDIPRDRQATFEPQLVGKYQRRLPGFDD
HVISMYARGMSVREIQGHLLELYGLQVSPDLISTVTDEVLADVEQWQQRPLEAMYPIVYFDALRLKIRDEGTVKNKAVYLALGIRADGRKEVLGLWIEQT
EGAKFWLKVFNELKNRGLHDILIAVVDGLRGFPEAIEAVYPAAQIQTCIVHLIRNSLNLASWKDRKPLAAAIKPIYQAATAEAAAAALDAFAQSEWGRKF
PTVAAMWQRQWEQVIPFFAYPPEVRRIVYTTNAIESMHMQLRKIVKNRGHFPSDEAASKLLYLALRNIEKDWKMPPITWRQAVNQFAILFGERFTSAIN
HVISMYARGMSVREIQGHLLELYGLQVSPDLISTVTDEVLADVEQWQQRPLEAMYPIVYFDALRLKIRDEGTVKNKAVYLALGIRADGRKEVLGLWIEQT
EGAKFWLKVFNELKNRGLHDILIAVVDGLRGFPEAIEAVYPAAQIQTCIVHLIRNSLNLASWKDRKPLAAAIKPIYQAATAEAAAAALDAFAQSEWGRKF
PTVAAMWQRQWEQVIPFFAYPPEVRRIVYTTNAIESMHMQLRKIVKNRGHFPSDEAASKLLYLALRNIEKDWKMPPITWRQAVNQFAILFGERFTSAIN
Blast result :
Comments
ISButh3 is 78% aa similar to ISSpwi2.
References
1] ISfinder submission (2018)
2] Minogue,T., Wolcott,M., Wasieloski,L., Aguilar,W., Moore,D., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vyas,G., Aluvathingal,J., Nadendla,S., Geyer,C. and Sichtig,H. (2017) Direct GenBank submission.
2] Minogue,T., Wolcott,M., Wasieloski,L., Aguilar,W., Moore,D., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vyas,G., Aluvathingal,J., Nadendla,S., Geyer,C. and Sichtig,H. (2017) Direct GenBank submission.