ISPye60

  • Family IS4
  • Group IS50
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP024422 ND Paracoccus yeei
Paracoccus yeei
Paracoccus yeei TT13
DNA section
IS Length : 1519 bp

Ends


IR Length : 22/23

IRL : CTTGCAGTTACCCACAAATGTCTTTTGCCCTGAGAAAGGTCTTGCTCCTG
IRR : CTTGCAGTTACCCACAAATGCCTGGTTTGGTTACGATGCGTGCGCCTTCA

Comments : Empty insertion sites in other P. yeei strains enabled precisely defining ends and DRs.

Insertion site


Left flankDirect repeatRight flankDR Length
aagtaggcgcCTACGCCGGacgcttacgg9
atgctgtcctATCCGCCGAccgattacgt9
tagtgatggtCATGATCGTatccttacca9
tcgtaaccgaCCGGTTGAGgccgcctgcc9
ccactgcggtAGCTATCGGgcgcttacta9

DNA sequence

CTTGCAGTTACCCACAAATGTCTTTTGCCCTGAGAAAGGTCTTGCTCCTGAAGAATCTTCCGTGATTCGTTGTCTGGCACCTTCAGTCAAACAGGTGCGG
ATATGGGGCAGAGTTGGGTGGACGCGGAAACGGCCGGCTGTGATTTGGGAGACGAACGGCTGAACCGGCGGCTTGGAGCAATGCTTGAGGCGCTCGGGCA
ACGACCGGGCAAATCGTTGCCCACGGCCTTTCAGGACTGGTCGAACACCAAGGCCGCATACCGCTTCTTCTCCAATGGCAATGTCAGTGAAGACAAGATC
ATGGAGGGTCATTTCGCGGCCTCCGCATTGCGGATCAGGGCCACCGATGGCCCAATCCTGATCCTGCAGGACACCACGGAATTCTCCTTCAAACGCTCGG
CGCCGGAGAAGATCGGCTTCACGAAGATATCGACTGGCCGCAAGCTGGAGGAAGGCCGTTACCAGAAGCATGCGGTCTGCGGCCTGCTGATGCATGCCAG
CCTGGCGATCACGCCCGACGGCCTGCCGCTCGGCTTGACCGCTGCCAAGTTCTGGTCGCGGTCCAAGTTCAAGGGGACGGCCGCGCTCAAGCGTCGGATC
AATCCGACCCGGGTTCCGATCGAGCAGAAGGAAAGCATGCGCTGGCTCGACAATCTGCGCCTGTCCACCAAACGGGCTGGTGCGCCCGAGCGCTGCGTGC
ATATCGGCGACCGGGAAAGCGATATTTACGAACTCTACTGTCTGGCCGAAGAACTCGGGACTGGCTTTCTGGTGCGCAGTTGCGTCGACCGCCTGGCAGA
GGACGGCAATACGACCATCTCCAGGGTGATGGCTCAGATCCAAGCCAGCGGCACCCATGAGATCGGGTTCCGGGATGCGCAGGGTCAGGCCCATCGCGCG
GTGCTGACAATCCGGCATGCTACGATGACCGTCCGCCCGCCGATCGGCAAGCAGCGGAAATACCAACACCAGACCCTTCAGATCATCCATGCCGAGGAGC
TTGATCCGCCGGAAGGGCGCCCGCCCGTCTTCTGGAAATTGATCACGAACCTGCCGGTGGAAAGCCATGCGCAGGCCGTGCACAAGCTCGAATGGTATGC
GCTGCGCTGGAAAATCGAGACTTTCTTCAGAACCCTGAAGACCGGCTGCCGGATCGAGGATATCCGCCTCGCCACCGCCGATCGCCTGGCCAATTGCATC
GCCCTGTGCTGCATCGTGGCCTGGCGTGTGTCATGGCTGACGATGCTCAGCCGCGGCACGCAAAGCGCAACGCCAGCAGCCGTCTTCACCGAAGCCGAAC
GGGGCTTGCTCGAACGTGCAACGCCGGACCGAAAACGCGACGATCCGCGTGACCTCCACTTCTATGTCAGAGCGATTGCCCGTCTGGGGGGATATCTCGA
CCGTGCAGCCGATCCACCACCAGGCGCGACCGTCATCTGGCGCGGCTTCGCACGCCTCGCTGATCTCGTTGAAGGCGCACGCATCGTAACCAAACCAGGC
ATTTGTGGGTAACTGCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1410 bp469 aa1031512+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGQSWVDAETAGCDLGDERLNRRLGAMLEALGQRPGKSLPTAFQDWSNTKAAYRFFSNGNVSEDKIMEGHFAASALRIRATDGPILILQDTTEFSFKRSA
PEKIGFTKISTGRKLEEGRYQKHAVCGLLMHASLAITPDGLPLGLTAAKFWSRSKFKGTAALKRRINPTRVPIEQKESMRWLDNLRLSTKRAGAPERCVH
IGDRESDIYELYCLAEELGTGFLVRSCVDRLAEDGNTTISRVMAQIQASGTHEIGFRDAQGQAHRAVLTIRHATMTVRPPIGKQRKYQHQTLQIIHAEEL
DPPEGRPPVFWKLITNLPVESHAQAVHKLEWYALRWKIETFFRTLKTGCRIEDIRLATADRLANCIALCCIVAWRVSWLTMLSRGTQSATPAAVFTEAER
GLLERATPDRKRDDPRDLHFYVRAIARLGGYLDRAADPPPGATVIWRGFARLADLVEGARIVTKPGICG

 

Blast result :
Comments
ISPye60 is 51% aa similar to ISLpn5.
ISPye60 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (5 copies present in the genome).
References