ISPye60
- Family IS4
- Group IS50
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP024422 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei TT13 |
DNA section
IS Length : 1519 bp
Ends
IR Length : 22/23
IRL : CTTGCAGTTACCCACAAATGTCTTTTGCCCTGAGAAAGGTCTTGCTCCTG
IRR : CTTGCAGTTACCCACAAATGCCTGGTTTGGTTACGATGCGTGCGCCTTCA
Comments : Empty insertion sites in other P. yeei strains enabled precisely defining ends and DRs.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
aagtaggcgc | CTACGCCGG | acgcttacgg | 9 |
atgctgtcct | ATCCGCCGA | ccgattacgt | 9 |
tagtgatggt | CATGATCGT | atccttacca | 9 |
tcgtaaccga | CCGGTTGAG | gccgcctgcc | 9 |
ccactgcggt | AGCTATCGG | gcgcttacta | 9 |
DNA sequence
CTTGCAGTTACCCACAAATGTCTTTTGCCCTGAGAAAGGTCTTGCTCCTGAAGAATCTTCCGTGATTCGTTGTCTGGCACCTTCAGTCAAACAGGTGCGG
ATATGGGGCAGAGTTGGGTGGACGCGGAAACGGCCGGCTGTGATTTGGGAGACGAACGGCTGAACCGGCGGCTTGGAGCAATGCTTGAGGCGCTCGGGCA
ACGACCGGGCAAATCGTTGCCCACGGCCTTTCAGGACTGGTCGAACACCAAGGCCGCATACCGCTTCTTCTCCAATGGCAATGTCAGTGAAGACAAGATC
ATGGAGGGTCATTTCGCGGCCTCCGCATTGCGGATCAGGGCCACCGATGGCCCAATCCTGATCCTGCAGGACACCACGGAATTCTCCTTCAAACGCTCGG
CGCCGGAGAAGATCGGCTTCACGAAGATATCGACTGGCCGCAAGCTGGAGGAAGGCCGTTACCAGAAGCATGCGGTCTGCGGCCTGCTGATGCATGCCAG
CCTGGCGATCACGCCCGACGGCCTGCCGCTCGGCTTGACCGCTGCCAAGTTCTGGTCGCGGTCCAAGTTCAAGGGGACGGCCGCGCTCAAGCGTCGGATC
AATCCGACCCGGGTTCCGATCGAGCAGAAGGAAAGCATGCGCTGGCTCGACAATCTGCGCCTGTCCACCAAACGGGCTGGTGCGCCCGAGCGCTGCGTGC
ATATCGGCGACCGGGAAAGCGATATTTACGAACTCTACTGTCTGGCCGAAGAACTCGGGACTGGCTTTCTGGTGCGCAGTTGCGTCGACCGCCTGGCAGA
GGACGGCAATACGACCATCTCCAGGGTGATGGCTCAGATCCAAGCCAGCGGCACCCATGAGATCGGGTTCCGGGATGCGCAGGGTCAGGCCCATCGCGCG
GTGCTGACAATCCGGCATGCTACGATGACCGTCCGCCCGCCGATCGGCAAGCAGCGGAAATACCAACACCAGACCCTTCAGATCATCCATGCCGAGGAGC
TTGATCCGCCGGAAGGGCGCCCGCCCGTCTTCTGGAAATTGATCACGAACCTGCCGGTGGAAAGCCATGCGCAGGCCGTGCACAAGCTCGAATGGTATGC
GCTGCGCTGGAAAATCGAGACTTTCTTCAGAACCCTGAAGACCGGCTGCCGGATCGAGGATATCCGCCTCGCCACCGCCGATCGCCTGGCCAATTGCATC
GCCCTGTGCTGCATCGTGGCCTGGCGTGTGTCATGGCTGACGATGCTCAGCCGCGGCACGCAAAGCGCAACGCCAGCAGCCGTCTTCACCGAAGCCGAAC
GGGGCTTGCTCGAACGTGCAACGCCGGACCGAAAACGCGACGATCCGCGTGACCTCCACTTCTATGTCAGAGCGATTGCCCGTCTGGGGGGATATCTCGA
CCGTGCAGCCGATCCACCACCAGGCGCGACCGTCATCTGGCGCGGCTTCGCACGCCTCGCTGATCTCGTTGAAGGCGCACGCATCGTAACCAAACCAGGC
ATTTGTGGGTAACTGCAAG
ATATGGGGCAGAGTTGGGTGGACGCGGAAACGGCCGGCTGTGATTTGGGAGACGAACGGCTGAACCGGCGGCTTGGAGCAATGCTTGAGGCGCTCGGGCA
ACGACCGGGCAAATCGTTGCCCACGGCCTTTCAGGACTGGTCGAACACCAAGGCCGCATACCGCTTCTTCTCCAATGGCAATGTCAGTGAAGACAAGATC
ATGGAGGGTCATTTCGCGGCCTCCGCATTGCGGATCAGGGCCACCGATGGCCCAATCCTGATCCTGCAGGACACCACGGAATTCTCCTTCAAACGCTCGG
CGCCGGAGAAGATCGGCTTCACGAAGATATCGACTGGCCGCAAGCTGGAGGAAGGCCGTTACCAGAAGCATGCGGTCTGCGGCCTGCTGATGCATGCCAG
CCTGGCGATCACGCCCGACGGCCTGCCGCTCGGCTTGACCGCTGCCAAGTTCTGGTCGCGGTCCAAGTTCAAGGGGACGGCCGCGCTCAAGCGTCGGATC
AATCCGACCCGGGTTCCGATCGAGCAGAAGGAAAGCATGCGCTGGCTCGACAATCTGCGCCTGTCCACCAAACGGGCTGGTGCGCCCGAGCGCTGCGTGC
ATATCGGCGACCGGGAAAGCGATATTTACGAACTCTACTGTCTGGCCGAAGAACTCGGGACTGGCTTTCTGGTGCGCAGTTGCGTCGACCGCCTGGCAGA
GGACGGCAATACGACCATCTCCAGGGTGATGGCTCAGATCCAAGCCAGCGGCACCCATGAGATCGGGTTCCGGGATGCGCAGGGTCAGGCCCATCGCGCG
GTGCTGACAATCCGGCATGCTACGATGACCGTCCGCCCGCCGATCGGCAAGCAGCGGAAATACCAACACCAGACCCTTCAGATCATCCATGCCGAGGAGC
TTGATCCGCCGGAAGGGCGCCCGCCCGTCTTCTGGAAATTGATCACGAACCTGCCGGTGGAAAGCCATGCGCAGGCCGTGCACAAGCTCGAATGGTATGC
GCTGCGCTGGAAAATCGAGACTTTCTTCAGAACCCTGAAGACCGGCTGCCGGATCGAGGATATCCGCCTCGCCACCGCCGATCGCCTGGCCAATTGCATC
GCCCTGTGCTGCATCGTGGCCTGGCGTGTGTCATGGCTGACGATGCTCAGCCGCGGCACGCAAAGCGCAACGCCAGCAGCCGTCTTCACCGAAGCCGAAC
GGGGCTTGCTCGAACGTGCAACGCCGGACCGAAAACGCGACGATCCGCGTGACCTCCACTTCTATGTCAGAGCGATTGCCCGTCTGGGGGGATATCTCGA
CCGTGCAGCCGATCCACCACCAGGCGCGACCGTCATCTGGCGCGGCTTCGCACGCCTCGCTGATCTCGTTGAAGGCGCACGCATCGTAACCAAACCAGGC
ATTTGTGGGTAACTGCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1410 bp | 469 aa | 103 | 1512 | + | No |
Chemistry : DDE
ORF sequence :
MGQSWVDAETAGCDLGDERLNRRLGAMLEALGQRPGKSLPTAFQDWSNTKAAYRFFSNGNVSEDKIMEGHFAASALRIRATDGPILILQDTTEFSFKRSA
PEKIGFTKISTGRKLEEGRYQKHAVCGLLMHASLAITPDGLPLGLTAAKFWSRSKFKGTAALKRRINPTRVPIEQKESMRWLDNLRLSTKRAGAPERCVH
IGDRESDIYELYCLAEELGTGFLVRSCVDRLAEDGNTTISRVMAQIQASGTHEIGFRDAQGQAHRAVLTIRHATMTVRPPIGKQRKYQHQTLQIIHAEEL
DPPEGRPPVFWKLITNLPVESHAQAVHKLEWYALRWKIETFFRTLKTGCRIEDIRLATADRLANCIALCCIVAWRVSWLTMLSRGTQSATPAAVFTEAER
GLLERATPDRKRDDPRDLHFYVRAIARLGGYLDRAADPPPGATVIWRGFARLADLVEGARIVTKPGICG
PEKIGFTKISTGRKLEEGRYQKHAVCGLLMHASLAITPDGLPLGLTAAKFWSRSKFKGTAALKRRINPTRVPIEQKESMRWLDNLRLSTKRAGAPERCVH
IGDRESDIYELYCLAEELGTGFLVRSCVDRLAEDGNTTISRVMAQIQASGTHEIGFRDAQGQAHRAVLTIRHATMTVRPPIGKQRKYQHQTLQIIHAEEL
DPPEGRPPVFWKLITNLPVESHAQAVHKLEWYALRWKIETFFRTLKTGCRIEDIRLATADRLANCIALCCIVAWRVSWLTMLSRGTQSATPAAVFTEAER
GLLERATPDRKRDDPRDLHFYVRAIARLGGYLDRAADPPPGATVIWRGFARLADLVEGARIVTKPGICG
Blast result :
Comments
ISPye60 is 51% aa similar to ISLpn5.
ISPye60 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (5 copies present in the genome).
ISPye60 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (5 copies present in the genome).
References