ISPye56
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP024422 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei TT13 |
DNA section
IS Length : 1053 bp
Ends
IR Length : 18
IRL : GGCGTTGTTGCAGAACTCGTCCCAGCGAGGATTCACGCGGGGGCTGCTGT
IRR : GGCGTTGTTGCAGAACTCACCTTTTGAGGTGAGTTCCCCTTACCCCACCA
Comments : Empty insertion site in P. yeei FDAARGOS_252 enabled precisely defining ends.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
cgcgacggcg | GGTTCGAGC | cgtccgtcag | 9 |
ccggagcaac | gatctgacca | 0 | |
aacattgacg | CCGGAATAG | accccatgtc | 9 |
cgcggtattg | CAACGGATC | gccgatgcct | 9 |
gggttcaaac | ggtccattct | 0 | |
gcacctgctc | ggtgatgccg | 0 | |
agcatgcccg | cctctgcatc | 0 |
DNA sequence
GGCGTTGTTGCAGAACTCGTCCCAGCGAGGATTCACGCGGGGGCTGCTGTAGGTTAAGCGTCCTTGCATGACGAAGCCTGAACCTGCCCGTTACCGCACG
ACGAACTGGAAATCCTACAACGCTGCCCTGAGGCGGCGCGGCTCGCTGCTGATCTGGTTGGACAGGGATATGGCATGGCTGGCGAGCGGGGCCGGGCGTC
CCGGCCGCCCGCCGGTGTTCTCCGATGCAGCGATCCAGTTCTGCCTGATGGTGAAGGTGCTCTTTGGCCTGCCGCTTCGGCAAACCACCGGCATGGTGGC
CAGCATCCTGGAGATGGCAGGGCTGGATTGGCCGGTGCCGGACTTTTCCACGCTGAGCCGCAGACAGAAGACTCTTGCCGTTCAGATATCCAACCGCCGC
GCGCCAGGGCCGCTGAACTTGTTGGTGGACAGCACCGGGATCAAGTTTCTGGGCGATGGAGAGTGGCTGGCGCGCAAGCACGGCACGCACCGCAGGCGCC
AATACCGCAAGGTCCATCTGGCGATGGACACGGCTACCGGTGACATCCGGGCGGTGGAGTTCACCTCAAGTCGTGAGGGAGACAGCCCTGTCCTGCCGGG
CCTTCTGGATCAGATCCCGCCCGCCGAACAGATCGGCACCGTGACCGGCGACGGCGCCTTCGACACCCGGCGGTGTCACACGGCCATCCTGGATCGCGGC
GGCACCGCCGTTATCCCGATCCGCAGGAACGGTCGCTTGTGGAAGGAAGACTGCCCTGCCGCCCGCGCCCGCAACGACATCCTTCGGGCGACCAGGCGCT
TTGGGCGAGCCAACTGGAAGCACTGGTCCGGGTATCACGCCCGAAGCAGGATCGAGGCAAGAATGCGCTGCCTCAAATCATTCGGCGAGCGGATCGCCTC
ACGAGACCCGGACAGACAAACCGCCGAGGTCCACATCCGCATCGCACTCATGAACCGCTTCAACGCACTCGGCACCGCCGAGATCAAGCGCGTGGCATGA
GGTTGGTGGGGTAAGGGGAACTCACCTCAAAAGGTGAGTTCTGCAACAACGCC
ACGAACTGGAAATCCTACAACGCTGCCCTGAGGCGGCGCGGCTCGCTGCTGATCTGGTTGGACAGGGATATGGCATGGCTGGCGAGCGGGGCCGGGCGTC
CCGGCCGCCCGCCGGTGTTCTCCGATGCAGCGATCCAGTTCTGCCTGATGGTGAAGGTGCTCTTTGGCCTGCCGCTTCGGCAAACCACCGGCATGGTGGC
CAGCATCCTGGAGATGGCAGGGCTGGATTGGCCGGTGCCGGACTTTTCCACGCTGAGCCGCAGACAGAAGACTCTTGCCGTTCAGATATCCAACCGCCGC
GCGCCAGGGCCGCTGAACTTGTTGGTGGACAGCACCGGGATCAAGTTTCTGGGCGATGGAGAGTGGCTGGCGCGCAAGCACGGCACGCACCGCAGGCGCC
AATACCGCAAGGTCCATCTGGCGATGGACACGGCTACCGGTGACATCCGGGCGGTGGAGTTCACCTCAAGTCGTGAGGGAGACAGCCCTGTCCTGCCGGG
CCTTCTGGATCAGATCCCGCCCGCCGAACAGATCGGCACCGTGACCGGCGACGGCGCCTTCGACACCCGGCGGTGTCACACGGCCATCCTGGATCGCGGC
GGCACCGCCGTTATCCCGATCCGCAGGAACGGTCGCTTGTGGAAGGAAGACTGCCCTGCCGCCCGCGCCCGCAACGACATCCTTCGGGCGACCAGGCGCT
TTGGGCGAGCCAACTGGAAGCACTGGTCCGGGTATCACGCCCGAAGCAGGATCGAGGCAAGAATGCGCTGCCTCAAATCATTCGGCGAGCGGATCGCCTC
ACGAGACCCGGACAGACAAACCGCCGAGGTCCACATCCGCATCGCACTCATGAACCGCTTCAACGCACTCGGCACCGCCGAGATCAAGCGCGTGGCATGA
GGTTGGTGGGGTAAGGGGAACTCACCTCAAAAGGTGAGTTCTGCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 68 | 1000 | + | No |
Chemistry : DDE
ORF sequence :
MTKPEPARYRTTNWKSYNAALRRRGSLLIWLDRDMAWLASGAGRPGRPPVFSDAAIQFCLMVKVLFGLPLRQTTGMVASILEMAGLDWPVPDFSTLSRRQ
KTLAVQISNRRAPGPLNLLVDSTGIKFLGDGEWLARKHGTHRRRQYRKVHLAMDTATGDIRAVEFTSSREGDSPVLPGLLDQIPPAEQIGTVTGDGAFDT
RRCHTAILDRGGTAVIPIRRNGRLWKEDCPAARARNDILRATRRFGRANWKHWSGYHARSRIEARMRCLKSFGERIASRDPDRQTAEVHIRIALMNRFNA
LGTAEIKRVA
KTLAVQISNRRAPGPLNLLVDSTGIKFLGDGEWLARKHGTHRRRQYRKVHLAMDTATGDIRAVEFTSSREGDSPVLPGLLDQIPPAEQIGTVTGDGAFDT
RRCHTAILDRGGTAVIPIRRNGRLWKEDCPAARARNDILRATRRFGRANWKHWSGYHARSRIEARMRCLKSFGERIASRDPDRQTAEVHIRIALMNRFNA
LGTAEIKRVA
Blast result :
Comments
ISPye56 is 95% aa similar to ISPth1.
ISPye56 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (7 copies present in the genome).
ISPye56 was identified by in silico sequence analysis of Paracoccus yeei strain TT13 (7 copies present in the genome).
References