ISBmu9
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AP009385 | ND | Burkholderia multivorans | Burkholderia multivorans ATCC 17616 |
DNA section
IS Length : 1196 bp
Ends
Left end : GACGGCGCGCCGCGCGCTTGTATGTTTAAGCCTGACCAGTACGGTAAAGTCTGAACGTAGCCAGACTAGACCGTGCAGTTTGTCGCGCGCTTGGGCGTTG
Right end : TGCCTGCATGCGCAAGCTTCTGACCATACTTAATGCCATGGTCAGATCCAACACACCTTGGGACGATTCGCTCCATAAGGCTTGACTTGGTAGACGGTTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACGGCGGGGGTCG | CTCAGTCGCCGA | 0 |
DNA sequence
GACGGCGCGCCGCGCGCTTGTATGTTTAAGCCTGACCAGTACGGTAAAGTCTGAACGTAGCCAGACTAGACCGTGCAGTTTGTCGCGCGCTTGGGCGTTG
GAGCCCGTGACTGAGTACAGAACGCACGGTCGCCGTGCTGGTCTTCCCGAAACCCGAACGGTTACGCGCGCCGGCCCTGCCGAGTGCGCATGTACAAGCA
TGGGATCCGAAGATCATGTCTGCTCCTTCCTTAGTAACGGTCGGCATTGACGTGGCAAAAGACCATGTCGATGTTTCCGTGCTGGGTGCCCATCTGGACA
CCCAGCGATTCGATAACGATGCGGAGGGCCATTCGGCCCTGGCCGTCGCCCTGCAGCCGCTGGACGTGGCGTTGGTCGTGATGGAAGCGACCGGCGGCTA
CGAGGCGGAAATGGCTTGCGCTTTGCAGAGCGCCGGTTTGCCGGTCGCGGTCGTCAATCCTCGACAGGCGCGCGATTTTGCCCGCTCGATGGGGCGTCTG
GCCAAGACCGATCGCATCGATGCCCGCATGCTCGCCCAACTGGCTTCGGTCCTGGTGCGTCGCGAAGATCTGTCCCGCTTGCTGCGCCCCGTTCCGGATG
AGCGCCAGCAGTGGCTGGCTGCTCTGTTGACCCGCCGTCGCCAGTTGCTCACCATGCTCCTCTCGGAACGACAGCGGCTGCAGATTACGCCGGTCGGTCT
GCATCCCAGCCTGTTGGCTATCATTGCTGCCGTTCAGGCTCAGCTCGACGACATCGACGCACAGATGGTCGGACACGTACGCGAGCACTTCAGTGAACTC
GACCGCCTGCTGCAATCGACTCACGGCATCGGTCCGGTATCCAGTGCTTGCCTGATCGCAGAACTGCCCGAATTGGGTAAGCTCAGCCGTCGCCAGATTG
CGGCTCTCGTCGGCGTCGCGCCTATTGCTTGCGATTCCGGCTCCCGCAATGGCAGACGACGCGTTCAGGGTGGTCGCTTTGAAATCCGTCGCGTGCTTTA
CATGGCCACCCTTACCGCCACCCGCCATAATCCCGCCATCAAAACCTTCTATCGACGCCTGAAGGCCGCCGGCAAACTGCCCAAGGTCGCGTTGGTTGCC
TGCATGCGCAAGCTTCTGACCATACTTAATGCCATGGTCAGATCCAACACACCTTGGGACGATTCGCTCCATAAGGCTTGACTTGGTAGACGGTTA
GAGCCCGTGACTGAGTACAGAACGCACGGTCGCCGTGCTGGTCTTCCCGAAACCCGAACGGTTACGCGCGCCGGCCCTGCCGAGTGCGCATGTACAAGCA
TGGGATCCGAAGATCATGTCTGCTCCTTCCTTAGTAACGGTCGGCATTGACGTGGCAAAAGACCATGTCGATGTTTCCGTGCTGGGTGCCCATCTGGACA
CCCAGCGATTCGATAACGATGCGGAGGGCCATTCGGCCCTGGCCGTCGCCCTGCAGCCGCTGGACGTGGCGTTGGTCGTGATGGAAGCGACCGGCGGCTA
CGAGGCGGAAATGGCTTGCGCTTTGCAGAGCGCCGGTTTGCCGGTCGCGGTCGTCAATCCTCGACAGGCGCGCGATTTTGCCCGCTCGATGGGGCGTCTG
GCCAAGACCGATCGCATCGATGCCCGCATGCTCGCCCAACTGGCTTCGGTCCTGGTGCGTCGCGAAGATCTGTCCCGCTTGCTGCGCCCCGTTCCGGATG
AGCGCCAGCAGTGGCTGGCTGCTCTGTTGACCCGCCGTCGCCAGTTGCTCACCATGCTCCTCTCGGAACGACAGCGGCTGCAGATTACGCCGGTCGGTCT
GCATCCCAGCCTGTTGGCTATCATTGCTGCCGTTCAGGCTCAGCTCGACGACATCGACGCACAGATGGTCGGACACGTACGCGAGCACTTCAGTGAACTC
GACCGCCTGCTGCAATCGACTCACGGCATCGGTCCGGTATCCAGTGCTTGCCTGATCGCAGAACTGCCCGAATTGGGTAAGCTCAGCCGTCGCCAGATTG
CGGCTCTCGTCGGCGTCGCGCCTATTGCTTGCGATTCCGGCTCCCGCAATGGCAGACGACGCGTTCAGGGTGGTCGCTTTGAAATCCGTCGCGTGCTTTA
CATGGCCACCCTTACCGCCACCCGCCATAATCCCGCCATCAAAACCTTCTATCGACGCCTGAAGGCCGCCGGCAAACTGCCCAAGGTCGCGTTGGTTGCC
TGCATGCGCAAGCTTCTGACCATACTTAATGCCATGGTCAGATCCAACACACCTTGGGACGATTCGCTCCATAAGGCTTGACTTGGTAGACGGTTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 966 bp | 321 aa | 216 | 1181 | + | No |
Chemistry : DEDD
ORF sequence :
MSAPSLVTVGIDVAKDHVDVSVLGAHLDTQRFDNDAEGHSALAVALQPLDVALVVMEATGGYEAEMACALQSAGLPVAVVNPRQARDFARSMGRLAKTDR
IDARMLAQLASVLVRREDLSRLLRPVPDERQQWLAALLTRRRQLLTMLLSERQRLQITPVGLHPSLLAIIAAVQAQLDDIDAQMVGHVREHFSELDRLLQ
STHGIGPVSSACLIAELPELGKLSRRQIAALVGVAPIACDSGSRNGRRRVQGGRFEIRRVLYMATLTATRHNPAIKTFYRRLKAAGKLPKVALVACMRKL
LTILNAMVRSNTPWDDSLHKA
IDARMLAQLASVLVRREDLSRLLRPVPDERQQWLAALLTRRRQLLTMLLSERQRLQITPVGLHPSLLAIIAAVQAQLDDIDAQMVGHVREHFSELDRLLQ
STHGIGPVSSACLIAELPELGKLSRRQIAALVGVAPIACDSGSRNGRRRVQGGRFEIRRVLYMATLTATRHNPAIKTFYRRLKAAGKLPKVALVACMRKL
LTILNAMVRSNTPWDDSLHKA
Blast result :
Comments
ISBmu9 is 96% aa similar to ISBcen8.
There is an empty site in Burkholderia multivorans strain MSMB1640WGS chromosome 1 (CP013467).
There is an empty site in Burkholderia multivorans strain MSMB1640WGS chromosome 1 (CP013467).
References
1] ISfinder submission (2018)
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submission.
2] Ohtsubo,Y., Yamashita,A., Kurokawa,K., Takami,H., Yuhara,S., Nishiyama,E., Endo,R., Miyazaki,R., Ono,A., Yano,K., Ito,M., Sota,M., Yuji,N., Hattori,M. and Tsuda,M. (2007) Direct GenBank submission.