ISBli27

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017150 ND Brevibacterium linens
Brevibacterium linens SMQ-1335
DNA section
IS Length : 1300 bp

Ends


IR Length : 19/21

IRL : CAGGGCCCCGGCAAAGTCGTGACTGGTGGTGTCGGCGTGTCGGTGCGCTG
IRR : CAGGGCTCCGGCAAAGTCATGTGAGGCCGAGAATGGTCAGTGGTCGGTGA

Insertion site


Left flankDirect repeatRight flankDR Length
CCGGAGAGGAGCCCGTAGTTCCGATTGGGGAGAGCAGATC0

DNA sequence

CAGGGCCCCGGCAAAGTCGTGACTGGTGGTGTCGGCGTGTCGGTGCGCTGAGATAGAACGAGATTCCTGTAGGACGAGTGATCGACCAAGATCCACGTCT
TTCCAGGAGCCTCGTTGTCGTCCCACTCTGCCATGCCCGTTGCGCGTTGTGTCCAGTCGCTGGCTGACCTGCGTTCTCGGTTCGCCGAGCTGCCTGACCC
CCGCCGTCGCCGCGGTGTCCGGCACCGGGTCTCGGCGATTCTGGCGATCGCCGCGGCGGCGGTGACCTGCGGTGCTCGCTCGTTGACCACGATCGGGGAA
TGGGCAGCCGATGCGCCCCAAAGGATCCTGGCAACCCTCGGCGCGCGCTGGCACCTCGGTCGCGGCCGCCATGTCGCCCCGCACGAGACGACACTGCGGC
GCACGCTGCAAGCCTTCGATGCCGCCGTGCTCGATGAGGTGATCAGCGACTGGCTCGCCGGGCACCTCACCGTGCGCGAGGATCTGGAGGCGATCGCGGT
CGACGGCAAGACGCTCCGCGGCGCCCGCGACGCCGACGGCGAGCAGGCCCATCTGCTCTCCGCGGTCGTCCACGACGCCGGTGTCGTGATCGCCCAGCGC
GACGTGGCGGCCAAGACCAACGAGATCACCGAGCTCGCCCCGCTGCTCGCGGGCGTGGACCTGACCGGAAAGGTGATCACCGCGGACGCCCTGCACACGC
AGCGCGCCACGGCCGAGGACCTGGTCACGGCACAGCGCGCCGACTACGTGCTGACCGTCAAGGCCAACCAGCCGACCCTGTTCGCCGCCTGCCAGCAGGC
GCTATCCGGACCGTCCCGCGCCTTCGCCGCCGAGGACGTCAGTTCCGAGCGTGGTCACGGACGCACCGAGCAGCGCACCACCCGGACCATGCCGGTCACC
GACGGCGACGGGATCGACTTCCCCCATGCCGCGCAGGTCTTCCGGATCCGCCGTGACACCGGCGGCCTGGACGGCCAGCGCATCCGGAAGGAGACCGCCT
ACTGCATCACCAGCCTGGCGCCCGCCCAGGCCGGCCCGGCTCGGCTCGGCGCGCTGGTGCGGGGGCACTGGGAGATCGAGAACCGAGTCCACTGGGTCCG
CGATGTCACCTACGACGAGGACCGCTCCCAGGTCCGCACCGGTGCTGCGCCCCAGGTCATGGCCAGCCTGCGCAACCTGGCCATCAGCGCCTTCCGCCTG
GCCGGTCACACCAACATCGCCGCCGCCCTCCGCTGGGCAGCCCGCGACTATCACCGACCACTGACCATTCTCGGCCTCACATGACTTTGCCGGAGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa1151284+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSSHSAMPVARCVQSLADLRSRFAELPDPRRRRGVRHRVSAILAIAAAAVTCGARSLTTIGEWAADAPQRILATLGARWHLGRGRHVAPHETTLRRTLQA
FDAAVLDEVISDWLAGHLTVREDLEAIAVDGKTLRGARDADGEQAHLLSAVVHDAGVVIAQRDVAAKTNEITELAPLLAGVDLTGKVITADALHTQRATA
EDLVTAQRADYVLTVKANQPTLFAACQQALSGPSRAFAAEDVSSERGHGRTEQRTTRTMPVTDGDGIDFPHAAQVFRIRRDTGGLDGQRIRKETAYCITS
LAPAQAGPARLGALVRGHWEIENRVHWVRDVTYDEDRSQVRTGAAPQVMASLRNLAISAFRLAGHTNIAAALRWAARDYHRPLTILGLT

 

Blast result :
Comments
ISBli27 is 51% aa similar to IS1629.
References
1] ISfinder annotation (2018)
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.