ISBli27
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP017150 | ND | Brevibacterium linens | Brevibacterium linens SMQ-1335 |
DNA section
IS Length : 1300 bp
Ends
IR Length : 19/21
IRL : CAGGGCCCCGGCAAAGTCGTGACTGGTGGTGTCGGCGTGTCGGTGCGCTG
IRR : CAGGGCTCCGGCAAAGTCATGTGAGGCCGAGAATGGTCAGTGGTCGGTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGGAGAGGAGCCCGTAGTT | CCGATTGGGGAGAGCAGATC | 0 |
DNA sequence
CAGGGCCCCGGCAAAGTCGTGACTGGTGGTGTCGGCGTGTCGGTGCGCTGAGATAGAACGAGATTCCTGTAGGACGAGTGATCGACCAAGATCCACGTCT
TTCCAGGAGCCTCGTTGTCGTCCCACTCTGCCATGCCCGTTGCGCGTTGTGTCCAGTCGCTGGCTGACCTGCGTTCTCGGTTCGCCGAGCTGCCTGACCC
CCGCCGTCGCCGCGGTGTCCGGCACCGGGTCTCGGCGATTCTGGCGATCGCCGCGGCGGCGGTGACCTGCGGTGCTCGCTCGTTGACCACGATCGGGGAA
TGGGCAGCCGATGCGCCCCAAAGGATCCTGGCAACCCTCGGCGCGCGCTGGCACCTCGGTCGCGGCCGCCATGTCGCCCCGCACGAGACGACACTGCGGC
GCACGCTGCAAGCCTTCGATGCCGCCGTGCTCGATGAGGTGATCAGCGACTGGCTCGCCGGGCACCTCACCGTGCGCGAGGATCTGGAGGCGATCGCGGT
CGACGGCAAGACGCTCCGCGGCGCCCGCGACGCCGACGGCGAGCAGGCCCATCTGCTCTCCGCGGTCGTCCACGACGCCGGTGTCGTGATCGCCCAGCGC
GACGTGGCGGCCAAGACCAACGAGATCACCGAGCTCGCCCCGCTGCTCGCGGGCGTGGACCTGACCGGAAAGGTGATCACCGCGGACGCCCTGCACACGC
AGCGCGCCACGGCCGAGGACCTGGTCACGGCACAGCGCGCCGACTACGTGCTGACCGTCAAGGCCAACCAGCCGACCCTGTTCGCCGCCTGCCAGCAGGC
GCTATCCGGACCGTCCCGCGCCTTCGCCGCCGAGGACGTCAGTTCCGAGCGTGGTCACGGACGCACCGAGCAGCGCACCACCCGGACCATGCCGGTCACC
GACGGCGACGGGATCGACTTCCCCCATGCCGCGCAGGTCTTCCGGATCCGCCGTGACACCGGCGGCCTGGACGGCCAGCGCATCCGGAAGGAGACCGCCT
ACTGCATCACCAGCCTGGCGCCCGCCCAGGCCGGCCCGGCTCGGCTCGGCGCGCTGGTGCGGGGGCACTGGGAGATCGAGAACCGAGTCCACTGGGTCCG
CGATGTCACCTACGACGAGGACCGCTCCCAGGTCCGCACCGGTGCTGCGCCCCAGGTCATGGCCAGCCTGCGCAACCTGGCCATCAGCGCCTTCCGCCTG
GCCGGTCACACCAACATCGCCGCCGCCCTCCGCTGGGCAGCCCGCGACTATCACCGACCACTGACCATTCTCGGCCTCACATGACTTTGCCGGAGCCCTG
TTCCAGGAGCCTCGTTGTCGTCCCACTCTGCCATGCCCGTTGCGCGTTGTGTCCAGTCGCTGGCTGACCTGCGTTCTCGGTTCGCCGAGCTGCCTGACCC
CCGCCGTCGCCGCGGTGTCCGGCACCGGGTCTCGGCGATTCTGGCGATCGCCGCGGCGGCGGTGACCTGCGGTGCTCGCTCGTTGACCACGATCGGGGAA
TGGGCAGCCGATGCGCCCCAAAGGATCCTGGCAACCCTCGGCGCGCGCTGGCACCTCGGTCGCGGCCGCCATGTCGCCCCGCACGAGACGACACTGCGGC
GCACGCTGCAAGCCTTCGATGCCGCCGTGCTCGATGAGGTGATCAGCGACTGGCTCGCCGGGCACCTCACCGTGCGCGAGGATCTGGAGGCGATCGCGGT
CGACGGCAAGACGCTCCGCGGCGCCCGCGACGCCGACGGCGAGCAGGCCCATCTGCTCTCCGCGGTCGTCCACGACGCCGGTGTCGTGATCGCCCAGCGC
GACGTGGCGGCCAAGACCAACGAGATCACCGAGCTCGCCCCGCTGCTCGCGGGCGTGGACCTGACCGGAAAGGTGATCACCGCGGACGCCCTGCACACGC
AGCGCGCCACGGCCGAGGACCTGGTCACGGCACAGCGCGCCGACTACGTGCTGACCGTCAAGGCCAACCAGCCGACCCTGTTCGCCGCCTGCCAGCAGGC
GCTATCCGGACCGTCCCGCGCCTTCGCCGCCGAGGACGTCAGTTCCGAGCGTGGTCACGGACGCACCGAGCAGCGCACCACCCGGACCATGCCGGTCACC
GACGGCGACGGGATCGACTTCCCCCATGCCGCGCAGGTCTTCCGGATCCGCCGTGACACCGGCGGCCTGGACGGCCAGCGCATCCGGAAGGAGACCGCCT
ACTGCATCACCAGCCTGGCGCCCGCCCAGGCCGGCCCGGCTCGGCTCGGCGCGCTGGTGCGGGGGCACTGGGAGATCGAGAACCGAGTCCACTGGGTCCG
CGATGTCACCTACGACGAGGACCGCTCCCAGGTCCGCACCGGTGCTGCGCCCCAGGTCATGGCCAGCCTGCGCAACCTGGCCATCAGCGCCTTCCGCCTG
GCCGGTCACACCAACATCGCCGCCGCCCTCCGCTGGGCAGCCCGCGACTATCACCGACCACTGACCATTCTCGGCCTCACATGACTTTGCCGGAGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 115 | 1284 | + | No |
Chemistry : Unknow
ORF sequence :
MSSHSAMPVARCVQSLADLRSRFAELPDPRRRRGVRHRVSAILAIAAAAVTCGARSLTTIGEWAADAPQRILATLGARWHLGRGRHVAPHETTLRRTLQA
FDAAVLDEVISDWLAGHLTVREDLEAIAVDGKTLRGARDADGEQAHLLSAVVHDAGVVIAQRDVAAKTNEITELAPLLAGVDLTGKVITADALHTQRATA
EDLVTAQRADYVLTVKANQPTLFAACQQALSGPSRAFAAEDVSSERGHGRTEQRTTRTMPVTDGDGIDFPHAAQVFRIRRDTGGLDGQRIRKETAYCITS
LAPAQAGPARLGALVRGHWEIENRVHWVRDVTYDEDRSQVRTGAAPQVMASLRNLAISAFRLAGHTNIAAALRWAARDYHRPLTILGLT
FDAAVLDEVISDWLAGHLTVREDLEAIAVDGKTLRGARDADGEQAHLLSAVVHDAGVVIAQRDVAAKTNEITELAPLLAGVDLTGKVITADALHTQRATA
EDLVTAQRADYVLTVKANQPTLFAACQQALSGPSRAFAAEDVSSERGHGRTEQRTTRTMPVTDGDGIDFPHAAQVFRIRRDTGGLDGQRIRKETAYCITS
LAPAQAGPARLGALVRGHWEIENRVHWVRDVTYDEDRSQVRTGAAPQVMASLRNLAISAFRLAGHTNIAAALRWAARDYHRPLTILGLT
Blast result :
Comments
ISBli27 is 51% aa similar to IS1629.
References
1] ISfinder annotation (2018)
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.