ISBli22

  • Family IS256
  • Group IS1249
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP017150 ND Brevibacterium linens
Brevibacterium linens SMQ-1335
DNA section
IS Length : 1308 bp

Ends


IR Length : 21/23

IRL : GGTTAGCGGCATAAATGTGTGTACAGGATAGGCCCCTTCCCCAGTAAACA
IRR : GGTTAGCGGCAAGAATGTGTGTATGGGGCCAGCGTGTTGGATCTGGATTT

Insertion site


Left flankDirect repeatRight flankDR Length
CCCACCCGCACCCGAACCCGCACGACGCAG10
CATAGGATCGGCGGCTCTGGCCGGCTCTGCGAAGATGAGG0
CCCGGGTCGTCGAGATCGTGCAGGAGATCC10
CAGGACCGATCGACCTTGTGCGACCTTGTCGTCTGTCACT0
AGCACGCCTGCGAGAAGACGAACAGAGGGC10

DNA sequence

GGTTAGCGGCATAAATGTGTGTACAGGATAGGCCCCTTCCCCAGTAAACAGTAAGGCAAGACAGGATTAAACATGCTCTGGAAGCATGTTCAGTGTCTCT
TCCTAGGAATCAACCCAGGTGTGGTGTATGCACCAGCAAGCTCGTGAAGAACGGAAAGACGAGCGCCGGACGTACCCGATGGCGATGCAAACACTGCGGG
GCCTCCACTACGAAGTCGCGCACCGACATCACCCGCAAAGCCGAATTTGATGCCTTCCAGCACTGGCTGGCTGGCACCCAAGCACAGGGTGGATACACCA
TCCCCAGGCGCACGTTCCGCCACCGAATCCGCTGGTGTTGGAACGTCGCCCCCGCCCTGACGCCCACGGGGGAAGTCCACGACCAGATCATGCTCGATGG
CACCTATTTCAACGGCTGGTGCGTCCTCATCGCCTTTACCGGCAGGCATGTCATCAACTGGCAATACACCGACGCAGAGAAACGCGCGTCCTGGACTGCT
CTCCTCGAGCACATCCCGGCACCGAAGGCCGCGATCGTCGATGGCAACGGACCACTACAGACGATCGTGAAGAAGCACTGGCCCACGACCCGCATTCAAC
GTTGCTTCTTCCATATCCGCCAGCGCGGCAACACCCATTTGACCCGGAACCCGACCCTGCCGGCGAATAAGGAACTCCTCGCCCTCTACAAGGCCCTCAT
GGACGTTCGCGCCCTCGACAAGGCCGCGGCCTGGACCGCAGCGTTTGCCTCCTGGGAAGCGAAATGGCAGTCGTTTCTCAAGCACCGTACCTACGCTGAA
AAGTCAACGATCAGGCCCGCTCATGTGAGTCCGAATCAGCAGTGGTGGTACACACACATCCGAACCCGCAGAGCATGGAAACTCCTCGCCAATCTCATCC
GCGATGACGAACTCTTCACCTGGCTGAAACTCGCCGAAGACGGTGTGATCATCTCCCGCACGACGAACCCGCTGGAAGGTGGGCCGAACAAGGCGATCAA
GGACTTCCTTCGGGCTCACAGAGGCCTGAGCGCGCCCCACGCCGTCACGGCGATCACGTGGTTGCTCTATCACCGCACCGAACATCCCAAAGACGCCTGG
CAGTTCGTGAAGCCAACTGATTGGGCTGAACCGAATAAACGTCGAATCCCGCCGAGGACAGACACTGGAAGGTCGGAGACGAATGCGCTTTACGGGACGT
CATTCAGCGTCGAGGACGGGACTGGAATCCGGAAAGGGTGGGGCGGACGATCAGGGTGAAATCCAGATCCAACACGCTGGCCCCATACACACATTCTTGC
CGCTAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa931259+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSLPRNQPRCGVCTSKLVKNGKTSAGRTRWRCKHCGASTTKSRTDITRKAEFDAFQHWLAGTQAQGGYTIPRRTFRHRIRWCWNVAPALTPTGEVHDQIM
LDGTYFNGWCVLIAFTGRHVINWQYTDAEKRASWTALLEHIPAPKAAIVDGNGPLQTIVKKHWPTTRIQRCFFHIRQRGNTHLTRNPTLPANKELLALYK
ALMDVRALDKAAAWTAAFASWEAKWQSFLKHRTYAEKSTIRPAHVSPNQQWWYTHIRTRRAWKLLANLIRDDELFTWLKLAEDGVIISRTTNPLEGGPNK
AIKDFLRAHRGLSAPHAVTAITWLLYHRTEHPKDAWQFVKPTDWAEPNKRRIPPRTDTGRSETNALYGTSFSVEDGTGIRKGWGGRSG

 

Blast result :
Comments
ISBli22 is 60% aa similar to ISGsi1.
References
1] ISfinder annotation (2018)
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.