ISBli22
- Family IS256
- Group IS1249
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP017150 | ND | Brevibacterium linens | Brevibacterium linens SMQ-1335 |
DNA section
IS Length : 1308 bp
Ends
IR Length : 21/23
IRL : GGTTAGCGGCATAAATGTGTGTACAGGATAGGCCCCTTCCCCAGTAAACA
IRR : GGTTAGCGGCAAGAATGTGTGTATGGGGCCAGCGTGTTGGATCTGGATTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCACCCGCA | CCCGAACCCG | CACGACGCAG | 10 |
CATAGGATCGGCGGCTCTGG | CCGGCTCTGCGAAGATGAGG | 0 | |
CCCGGGTCGT | CGAGATCGTG | CAGGAGATCC | 10 |
CAGGACCGATCGACCTTGTG | CGACCTTGTCGTCTGTCACT | 0 | |
AGCACGCCTG | CGAGAAGACG | AACAGAGGGC | 10 |
DNA sequence
GGTTAGCGGCATAAATGTGTGTACAGGATAGGCCCCTTCCCCAGTAAACAGTAAGGCAAGACAGGATTAAACATGCTCTGGAAGCATGTTCAGTGTCTCT
TCCTAGGAATCAACCCAGGTGTGGTGTATGCACCAGCAAGCTCGTGAAGAACGGAAAGACGAGCGCCGGACGTACCCGATGGCGATGCAAACACTGCGGG
GCCTCCACTACGAAGTCGCGCACCGACATCACCCGCAAAGCCGAATTTGATGCCTTCCAGCACTGGCTGGCTGGCACCCAAGCACAGGGTGGATACACCA
TCCCCAGGCGCACGTTCCGCCACCGAATCCGCTGGTGTTGGAACGTCGCCCCCGCCCTGACGCCCACGGGGGAAGTCCACGACCAGATCATGCTCGATGG
CACCTATTTCAACGGCTGGTGCGTCCTCATCGCCTTTACCGGCAGGCATGTCATCAACTGGCAATACACCGACGCAGAGAAACGCGCGTCCTGGACTGCT
CTCCTCGAGCACATCCCGGCACCGAAGGCCGCGATCGTCGATGGCAACGGACCACTACAGACGATCGTGAAGAAGCACTGGCCCACGACCCGCATTCAAC
GTTGCTTCTTCCATATCCGCCAGCGCGGCAACACCCATTTGACCCGGAACCCGACCCTGCCGGCGAATAAGGAACTCCTCGCCCTCTACAAGGCCCTCAT
GGACGTTCGCGCCCTCGACAAGGCCGCGGCCTGGACCGCAGCGTTTGCCTCCTGGGAAGCGAAATGGCAGTCGTTTCTCAAGCACCGTACCTACGCTGAA
AAGTCAACGATCAGGCCCGCTCATGTGAGTCCGAATCAGCAGTGGTGGTACACACACATCCGAACCCGCAGAGCATGGAAACTCCTCGCCAATCTCATCC
GCGATGACGAACTCTTCACCTGGCTGAAACTCGCCGAAGACGGTGTGATCATCTCCCGCACGACGAACCCGCTGGAAGGTGGGCCGAACAAGGCGATCAA
GGACTTCCTTCGGGCTCACAGAGGCCTGAGCGCGCCCCACGCCGTCACGGCGATCACGTGGTTGCTCTATCACCGCACCGAACATCCCAAAGACGCCTGG
CAGTTCGTGAAGCCAACTGATTGGGCTGAACCGAATAAACGTCGAATCCCGCCGAGGACAGACACTGGAAGGTCGGAGACGAATGCGCTTTACGGGACGT
CATTCAGCGTCGAGGACGGGACTGGAATCCGGAAAGGGTGGGGCGGACGATCAGGGTGAAATCCAGATCCAACACGCTGGCCCCATACACACATTCTTGC
CGCTAACC
TCCTAGGAATCAACCCAGGTGTGGTGTATGCACCAGCAAGCTCGTGAAGAACGGAAAGACGAGCGCCGGACGTACCCGATGGCGATGCAAACACTGCGGG
GCCTCCACTACGAAGTCGCGCACCGACATCACCCGCAAAGCCGAATTTGATGCCTTCCAGCACTGGCTGGCTGGCACCCAAGCACAGGGTGGATACACCA
TCCCCAGGCGCACGTTCCGCCACCGAATCCGCTGGTGTTGGAACGTCGCCCCCGCCCTGACGCCCACGGGGGAAGTCCACGACCAGATCATGCTCGATGG
CACCTATTTCAACGGCTGGTGCGTCCTCATCGCCTTTACCGGCAGGCATGTCATCAACTGGCAATACACCGACGCAGAGAAACGCGCGTCCTGGACTGCT
CTCCTCGAGCACATCCCGGCACCGAAGGCCGCGATCGTCGATGGCAACGGACCACTACAGACGATCGTGAAGAAGCACTGGCCCACGACCCGCATTCAAC
GTTGCTTCTTCCATATCCGCCAGCGCGGCAACACCCATTTGACCCGGAACCCGACCCTGCCGGCGAATAAGGAACTCCTCGCCCTCTACAAGGCCCTCAT
GGACGTTCGCGCCCTCGACAAGGCCGCGGCCTGGACCGCAGCGTTTGCCTCCTGGGAAGCGAAATGGCAGTCGTTTCTCAAGCACCGTACCTACGCTGAA
AAGTCAACGATCAGGCCCGCTCATGTGAGTCCGAATCAGCAGTGGTGGTACACACACATCCGAACCCGCAGAGCATGGAAACTCCTCGCCAATCTCATCC
GCGATGACGAACTCTTCACCTGGCTGAAACTCGCCGAAGACGGTGTGATCATCTCCCGCACGACGAACCCGCTGGAAGGTGGGCCGAACAAGGCGATCAA
GGACTTCCTTCGGGCTCACAGAGGCCTGAGCGCGCCCCACGCCGTCACGGCGATCACGTGGTTGCTCTATCACCGCACCGAACATCCCAAAGACGCCTGG
CAGTTCGTGAAGCCAACTGATTGGGCTGAACCGAATAAACGTCGAATCCCGCCGAGGACAGACACTGGAAGGTCGGAGACGAATGCGCTTTACGGGACGT
CATTCAGCGTCGAGGACGGGACTGGAATCCGGAAAGGGTGGGGCGGACGATCAGGGTGAAATCCAGATCCAACACGCTGGCCCCATACACACATTCTTGC
CGCTAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 93 | 1259 | + | No |
Chemistry : DDE
ORF sequence :
MSLPRNQPRCGVCTSKLVKNGKTSAGRTRWRCKHCGASTTKSRTDITRKAEFDAFQHWLAGTQAQGGYTIPRRTFRHRIRWCWNVAPALTPTGEVHDQIM
LDGTYFNGWCVLIAFTGRHVINWQYTDAEKRASWTALLEHIPAPKAAIVDGNGPLQTIVKKHWPTTRIQRCFFHIRQRGNTHLTRNPTLPANKELLALYK
ALMDVRALDKAAAWTAAFASWEAKWQSFLKHRTYAEKSTIRPAHVSPNQQWWYTHIRTRRAWKLLANLIRDDELFTWLKLAEDGVIISRTTNPLEGGPNK
AIKDFLRAHRGLSAPHAVTAITWLLYHRTEHPKDAWQFVKPTDWAEPNKRRIPPRTDTGRSETNALYGTSFSVEDGTGIRKGWGGRSG
LDGTYFNGWCVLIAFTGRHVINWQYTDAEKRASWTALLEHIPAPKAAIVDGNGPLQTIVKKHWPTTRIQRCFFHIRQRGNTHLTRNPTLPANKELLALYK
ALMDVRALDKAAAWTAAFASWEAKWQSFLKHRTYAEKSTIRPAHVSPNQQWWYTHIRTRRAWKLLANLIRDDELFTWLKLAEDGVIISRTTNPLEGGPNK
AIKDFLRAHRGLSAPHAVTAITWLLYHRTEHPKDAWQFVKPTDWAEPNKRRIPPRTDTGRSETNALYGTSFSVEDGTGIRKGWGGRSG
Blast result :
Comments
ISBli22 is 60% aa similar to ISGsi1.
References
1] ISfinder annotation (2018)
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.
2] de Melo,A.G., Labrie,S.J., Dumaresq,J., Roberts,R.J., Tremblay,D.M. and Moineau,S. (2016) Direct GenBank submission.