ISBli20
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP014869 | ND | Brevibacterium linens | Brevibacterium linens BS258 Brevibacterium aurantiacum Brevibacterium epidermidis BS258 |
DNA section
IS Length : 1476 bp
Ends
IR Length : 36/50
IRL : TGTGGTGTCTACACTCTTATCGGACAGTGTTCCTACACACTTACCGGACA
IRR : TGTGTTGTCTAGTGACTTATCGGACAGGCTGTCTCGCCACTTCGCGGACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTAGTTTGA | AACAGGGCTGCTCAC | CCTAAACCGT | 15 |
CCATTTTTGA | AACTGGGCTATCCGC | CTCAGACTGG | 15 |
ACGGTTTTGA | AACCGTGCATTCCAG | CTCAAAGCGG | 15 |
ACGGTTTCAA | ACACGGGCTGTTCAC | CCTAAAGCGT | 15 |
ACTGTTTCAA | AACAGTGCTTCTCAA | CTTAAAGCGT | 15 |
DNA sequence
TGTGGTGTCTACACTCTTATCGGACAGTGTTCCTACACACTTACCGGACACAGTCCTGACACACTTATCGGACACCGTCGAGGTCTTACTGGCTTATCGG
ACACCCCAACGATTGTGTGGGGCTATGACTCCACGCATCAGCACACACATTCGCCGACTCATCCGCAGCCATAACCCCGACGACCCCGAACAGGAATCAG
TCGCCCAGTTCTGCCGGACCCACACACTCAGCCGCGACTCGTACTACCGCATCAAGAACCAACCCGATCGCTTCCTCCCTCAATCGACCGCGCCAAAGTC
CCCACACCGCACCTACGGGGAACTGACATGGATCGAAGTCAGACGCTTCCGCGAAATGCTCCAGACCGAAGGCTATGACGACGGGCCCCGGTCAATTAAA
TGGGAAATGATCAGAGCCGACCTCGACAAGTCCCTCATCCCCAGCACCGCTCGCATCGCCCAATATCTCCACAACAACGAACTCGCCCGCATCAACCCGA
AGAAGCGCCCTCACGCGTCGTACAAACGCTTTCAGAAGGACCACGCCAACGAGCTGTGGCAACTCGACGGATTCGAATACCGCCTTCCCGATGGCACCAT
CGTCACCATCATTCAGCTCATCGATGACTGCACCCGCTACATGCTCGCCCTCGACGTCTCTGACGATGGTGAAACCAGCCGGGCTGCACTGAAGTCCATC
ACCGACGCTATCGCCGCCTACGGCAAACCACGCGAGATCCTCAGCGACAATGCTCGCGCGTTCACCATGCAACGCTTTGGAACCGTCGGCAGCGTCGATA
TCGCCATGGCCGCGCAAGGCATCATCCTCACCCCGGGCCCTTTCCACCGCCCCCAAAACCAAGGCAAGGTCGAAAGCTCCCACAAACCCGCGCTCAAACG
CCTCAGAGCAAAGAAGCCCACGACTCCTGCCGAGGTTGCCGACCTGCTCAAGGAGTTCCGGCAGCGCTATAACCACGAACGTCAGCACCTCGGACTCGGC
GAAGGAATCACTCCTGCCAGTGCTTGGCAGGCAGCGACACGAGTTCCTGAACCCACCAAACCGATCGACATCAGCCAGTTCAGGGACCGCTACACAACGC
CCGAATCACGCGGGTATCTCAACCCGGCGACGACGACCAGGCGCCTGCTGCGGCGCGGACAGCTCAATTTCGCTGGCAAGCAGATACGGTTCGGACCGAT
CTGGAGATTCCAAGAACTGGCCATCATCGATCAGGGCTCGTACTACGAGTTCTTCCACCTCGCCACGGGAATATCCGTGGCGACGCTATTCCGGCCGCTG
CCCGATCTGCATTCACTGGCGATCAAGAAATACGGCACCTACACCGCCGGAGATCAGAAGCATCTTCCCGACGGTATCGAACCGCGAAAATGACTCAGGC
GGTGTCCGATAAGTGTGTAGGAACACTGTCCGCGAAGTGGCGAGACAGCCTGTCCGATAAGTCACTAGACAACACA
ACACCCCAACGATTGTGTGGGGCTATGACTCCACGCATCAGCACACACATTCGCCGACTCATCCGCAGCCATAACCCCGACGACCCCGAACAGGAATCAG
TCGCCCAGTTCTGCCGGACCCACACACTCAGCCGCGACTCGTACTACCGCATCAAGAACCAACCCGATCGCTTCCTCCCTCAATCGACCGCGCCAAAGTC
CCCACACCGCACCTACGGGGAACTGACATGGATCGAAGTCAGACGCTTCCGCGAAATGCTCCAGACCGAAGGCTATGACGACGGGCCCCGGTCAATTAAA
TGGGAAATGATCAGAGCCGACCTCGACAAGTCCCTCATCCCCAGCACCGCTCGCATCGCCCAATATCTCCACAACAACGAACTCGCCCGCATCAACCCGA
AGAAGCGCCCTCACGCGTCGTACAAACGCTTTCAGAAGGACCACGCCAACGAGCTGTGGCAACTCGACGGATTCGAATACCGCCTTCCCGATGGCACCAT
CGTCACCATCATTCAGCTCATCGATGACTGCACCCGCTACATGCTCGCCCTCGACGTCTCTGACGATGGTGAAACCAGCCGGGCTGCACTGAAGTCCATC
ACCGACGCTATCGCCGCCTACGGCAAACCACGCGAGATCCTCAGCGACAATGCTCGCGCGTTCACCATGCAACGCTTTGGAACCGTCGGCAGCGTCGATA
TCGCCATGGCCGCGCAAGGCATCATCCTCACCCCGGGCCCTTTCCACCGCCCCCAAAACCAAGGCAAGGTCGAAAGCTCCCACAAACCCGCGCTCAAACG
CCTCAGAGCAAAGAAGCCCACGACTCCTGCCGAGGTTGCCGACCTGCTCAAGGAGTTCCGGCAGCGCTATAACCACGAACGTCAGCACCTCGGACTCGGC
GAAGGAATCACTCCTGCCAGTGCTTGGCAGGCAGCGACACGAGTTCCTGAACCCACCAAACCGATCGACATCAGCCAGTTCAGGGACCGCTACACAACGC
CCGAATCACGCGGGTATCTCAACCCGGCGACGACGACCAGGCGCCTGCTGCGGCGCGGACAGCTCAATTTCGCTGGCAAGCAGATACGGTTCGGACCGAT
CTGGAGATTCCAAGAACTGGCCATCATCGATCAGGGCTCGTACTACGAGTTCTTCCACCTCGCCACGGGAATATCCGTGGCGACGCTATTCCGGCCGCTG
CCCGATCTGCATTCACTGGCGATCAAGAAATACGGCACCTACACCGCCGGAGATCAGAAGCATCTTCCCGACGGTATCGAACCGCGAAAATGACTCAGGC
GGTGTCCGATAAGTGTGTAGGAACACTGTCCGCGAAGTGGCGAGACAGCCTGTCCGATAAGTCACTAGACAACACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1269 bp | 422 aa | 125 | 1393 | + | No |
Chemistry : DDE
ORF sequence :
MTPRISTHIRRLIRSHNPDDPEQESVAQFCRTHTLSRDSYYRIKNQPDRFLPQSTAPKSPHRTYGELTWIEVRRFREMLQTEGYDDGPRSIKWEMIRADL
DKSLIPSTARIAQYLHNNELARINPKKRPHASYKRFQKDHANELWQLDGFEYRLPDGTIVTIIQLIDDCTRYMLALDVSDDGETSRAALKSITDAIAAYG
KPREILSDNARAFTMQRFGTVGSVDIAMAAQGIILTPGPFHRPQNQGKVESSHKPALKRLRAKKPTTPAEVADLLKEFRQRYNHERQHLGLGEGITPASA
WQAATRVPEPTKPIDISQFRDRYTTPESRGYLNPATTTRRLLRRGQLNFAGKQIRFGPIWRFQELAIIDQGSYYEFFHLATGISVATLFRPLPDLHSLAI
KKYGTYTAGDQKHLPDGIEPRK
DKSLIPSTARIAQYLHNNELARINPKKRPHASYKRFQKDHANELWQLDGFEYRLPDGTIVTIIQLIDDCTRYMLALDVSDDGETSRAALKSITDAIAAYG
KPREILSDNARAFTMQRFGTVGSVDIAMAAQGIILTPGPFHRPQNQGKVESSHKPALKRLRAKKPTTPAEVADLLKEFRQRYNHERQHLGLGEGITPASA
WQAATRVPEPTKPIDISQFRDRYTTPESRGYLNPATTTRRLLRRGQLNFAGKQIRFGPIWRFQELAIIDQGSYYEFFHLATGISVATLFRPLPDLHSLAI
KKYGTYTAGDQKHLPDGIEPRK
Blast result :
Comments
ISBli20 is 54% aa similar to ISAar22.
References
1] ISfinder annotation (2018)
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.