ISBli20

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014869 ND Brevibacterium linens
Brevibacterium linens BS258
Brevibacterium aurantiacum
Brevibacterium epidermidis BS258
DNA section
IS Length : 1476 bp

Ends


IR Length : 36/50

IRL : TGTGGTGTCTACACTCTTATCGGACAGTGTTCCTACACACTTACCGGACA
IRR : TGTGTTGTCTAGTGACTTATCGGACAGGCTGTCTCGCCACTTCGCGGACA

Insertion site


Left flankDirect repeatRight flankDR Length
CCTAGTTTGAAACAGGGCTGCTCACCCTAAACCGT15
CCATTTTTGAAACTGGGCTATCCGCCTCAGACTGG15
ACGGTTTTGAAACCGTGCATTCCAGCTCAAAGCGG15
ACGGTTTCAAACACGGGCTGTTCACCCTAAAGCGT15
ACTGTTTCAAAACAGTGCTTCTCAACTTAAAGCGT15

DNA sequence

TGTGGTGTCTACACTCTTATCGGACAGTGTTCCTACACACTTACCGGACACAGTCCTGACACACTTATCGGACACCGTCGAGGTCTTACTGGCTTATCGG
ACACCCCAACGATTGTGTGGGGCTATGACTCCACGCATCAGCACACACATTCGCCGACTCATCCGCAGCCATAACCCCGACGACCCCGAACAGGAATCAG
TCGCCCAGTTCTGCCGGACCCACACACTCAGCCGCGACTCGTACTACCGCATCAAGAACCAACCCGATCGCTTCCTCCCTCAATCGACCGCGCCAAAGTC
CCCACACCGCACCTACGGGGAACTGACATGGATCGAAGTCAGACGCTTCCGCGAAATGCTCCAGACCGAAGGCTATGACGACGGGCCCCGGTCAATTAAA
TGGGAAATGATCAGAGCCGACCTCGACAAGTCCCTCATCCCCAGCACCGCTCGCATCGCCCAATATCTCCACAACAACGAACTCGCCCGCATCAACCCGA
AGAAGCGCCCTCACGCGTCGTACAAACGCTTTCAGAAGGACCACGCCAACGAGCTGTGGCAACTCGACGGATTCGAATACCGCCTTCCCGATGGCACCAT
CGTCACCATCATTCAGCTCATCGATGACTGCACCCGCTACATGCTCGCCCTCGACGTCTCTGACGATGGTGAAACCAGCCGGGCTGCACTGAAGTCCATC
ACCGACGCTATCGCCGCCTACGGCAAACCACGCGAGATCCTCAGCGACAATGCTCGCGCGTTCACCATGCAACGCTTTGGAACCGTCGGCAGCGTCGATA
TCGCCATGGCCGCGCAAGGCATCATCCTCACCCCGGGCCCTTTCCACCGCCCCCAAAACCAAGGCAAGGTCGAAAGCTCCCACAAACCCGCGCTCAAACG
CCTCAGAGCAAAGAAGCCCACGACTCCTGCCGAGGTTGCCGACCTGCTCAAGGAGTTCCGGCAGCGCTATAACCACGAACGTCAGCACCTCGGACTCGGC
GAAGGAATCACTCCTGCCAGTGCTTGGCAGGCAGCGACACGAGTTCCTGAACCCACCAAACCGATCGACATCAGCCAGTTCAGGGACCGCTACACAACGC
CCGAATCACGCGGGTATCTCAACCCGGCGACGACGACCAGGCGCCTGCTGCGGCGCGGACAGCTCAATTTCGCTGGCAAGCAGATACGGTTCGGACCGAT
CTGGAGATTCCAAGAACTGGCCATCATCGATCAGGGCTCGTACTACGAGTTCTTCCACCTCGCCACGGGAATATCCGTGGCGACGCTATTCCGGCCGCTG
CCCGATCTGCATTCACTGGCGATCAAGAAATACGGCACCTACACCGCCGGAGATCAGAAGCATCTTCCCGACGGTATCGAACCGCGAAAATGACTCAGGC
GGTGTCCGATAAGTGTGTAGGAACACTGTCCGCGAAGTGGCGAGACAGCCTGTCCGATAAGTCACTAGACAACACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1269 bp422 aa1251393+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTPRISTHIRRLIRSHNPDDPEQESVAQFCRTHTLSRDSYYRIKNQPDRFLPQSTAPKSPHRTYGELTWIEVRRFREMLQTEGYDDGPRSIKWEMIRADL
DKSLIPSTARIAQYLHNNELARINPKKRPHASYKRFQKDHANELWQLDGFEYRLPDGTIVTIIQLIDDCTRYMLALDVSDDGETSRAALKSITDAIAAYG
KPREILSDNARAFTMQRFGTVGSVDIAMAAQGIILTPGPFHRPQNQGKVESSHKPALKRLRAKKPTTPAEVADLLKEFRQRYNHERQHLGLGEGITPASA
WQAATRVPEPTKPIDISQFRDRYTTPESRGYLNPATTTRRLLRRGQLNFAGKQIRFGPIWRFQELAIIDQGSYYEFFHLATGISVATLFRPLPDLHSLAI
KKYGTYTAGDQKHLPDGIEPRK

 

Blast result :
Comments
ISBli20 is 54% aa similar to ISAar22.
References
1] ISfinder annotation (2018)
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.