ISPye18
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP020444 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 Paracoccus yeei CCUG 32053 |
DNA section
IS Length : 1660 bp
Ends
IR Length : 16
IRL : CAGACCGTGTGAAAACACCTGTAGGATTCCCTGACATCCATGCGGGTGAT
IRR : CAGACCGTGTGAAAACCCGGAGGAATTGCAGGGAACTCGGTCCGTTTGTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| tccgttgagc | C/GATC | ccctttcgga | 4 |
| tccgcaaggg | GATC | gttgaaggga | 4 |
DNA sequence
CAGACCGTGTGAAAACACCTGTAGGATTCCCTGACATCCATGCGGGTGATATGCTCAGTCATGGCACATATCTCAGGTGATGACCGATCTCAGCTTCTGC
TCTTGCCAGAGTCCGTGGACGACTATGTAGCGCCGGACAATCCTGTCCGGTTCATCGAAGCATTTGTCGATAGTCTGGACCTGGAGGCGTGCGGCTTTGC
ACGGGTCCGCGGCAAGGCCACCGGTAGGCCAGGCTATAATCCCGCTGACCTGCTTAAGCTCTACATCTATGGGTATCTTAACAGGGTGCGGTCCAGCCGA
CGCCTAGAAATTGAAACACGGCGCAACATTGAGGTCATCTGGCTGATGCGCCGTCTTTCTCCCGATTTCAAAACGATCGCTGACTTCCGGCGTGACAACC
GGGCCGCATTCCGACAGGTCTTCAGGGCGTTCGTTGTTCTCTGCCGGGAGCTCGATCTGTACGGCCGCGAGTTGGTTGCCGTTGATGGCACCCGCCTGAA
GGCCGTAAATAGCCGGGATCGTAATTTCACAAAAGCAAAGCTGGAAAGAAGCCTCCGCGAAAGCGAAGAGAAGCTGGACCGCTATCTGAAGCAACTGGAT
ATCGCGGACAAGGACGACGTAGACGGAGCTGATCCATCCAAAGCCAAAGATTTGCAGGCAAAGATCGCAAAGGTACGGGAACGGCGCGTTCATCTTGAAG
CCTGCCAGTCCGACCTCGCAAAGAGTGCGGAGGATCAGATATCGCTGACGGACCCAGACAGCCGCGCGATGCATCCGTCGAGCCGTGTGAGCGTCGGCTA
CAATGTTCAGATTGCCGTTGACACCAAGCATAAGCTCATCGCCGAACAGCAAGTCCACAGCCGTGTCGCCGACCAGGGTCTGTTAGCTGAAACGGCGAAC
GCCGCACGCGAGAACTTGGCCGTGGACGAGATAAAGGCTGTCGCGGACCGAGGCTACTACAGCATGGAGGATATTGCTGCTTGTAATGCCGCCGCCGTCA
TTCCGCATGTTTGCAAGCCGAACAACAGCATCGCGGCACGCAGCGGTCATTTCACAAAAGAGATGTTCCGCTACGACGCGGTGGCCGATGTCTATATTTG
CCCTGGAAGCCAAACTCTTGAACCAAGATATGTCGACAAGACACGGGGCCCGACGAAGATCGAGTATTGCAATCGTGCCGCCTGTCGGACCTGCGATCTT
CGTTCCCTCTGCACCAACGGCTCATATCGCAAGATCACCCGGGCCGAGGACGAAGCCTTGCTGGAGCAAATGGCGGAGCGCTTGCGCGCAAGGCCAGAAC
TTCTGGATATACGTCGTGAGACCGTTGAACATCCATTCGGCACAATCAAGCAGTGGATGGGACAAGGTGCATTCCTGATGAGGCGTCTCGAAAACGTGCG
GGGCGAGTTCAGCCTGACGGCGCTGGCGTACAACATCCGTCGGGCAATCACCCTGGTTGGCGTTTCCGGTCTGATTGCAGCAGCTGCCAACTGAAATCTG
GTGCAGTTATGTCCGCAGCCGCAAGACGCGGCTACAACGCTCTAGGATTACAAGGTTTTTGGCTAACTAAGCACGAAATGCTGCGCAAAAGCGCACAAGA
TGACGAGCAGAACAAACGGACCGAGTTCCCTGCAATTCCTCCGGGTTTTCACACGGTCTG
TCTTGCCAGAGTCCGTGGACGACTATGTAGCGCCGGACAATCCTGTCCGGTTCATCGAAGCATTTGTCGATAGTCTGGACCTGGAGGCGTGCGGCTTTGC
ACGGGTCCGCGGCAAGGCCACCGGTAGGCCAGGCTATAATCCCGCTGACCTGCTTAAGCTCTACATCTATGGGTATCTTAACAGGGTGCGGTCCAGCCGA
CGCCTAGAAATTGAAACACGGCGCAACATTGAGGTCATCTGGCTGATGCGCCGTCTTTCTCCCGATTTCAAAACGATCGCTGACTTCCGGCGTGACAACC
GGGCCGCATTCCGACAGGTCTTCAGGGCGTTCGTTGTTCTCTGCCGGGAGCTCGATCTGTACGGCCGCGAGTTGGTTGCCGTTGATGGCACCCGCCTGAA
GGCCGTAAATAGCCGGGATCGTAATTTCACAAAAGCAAAGCTGGAAAGAAGCCTCCGCGAAAGCGAAGAGAAGCTGGACCGCTATCTGAAGCAACTGGAT
ATCGCGGACAAGGACGACGTAGACGGAGCTGATCCATCCAAAGCCAAAGATTTGCAGGCAAAGATCGCAAAGGTACGGGAACGGCGCGTTCATCTTGAAG
CCTGCCAGTCCGACCTCGCAAAGAGTGCGGAGGATCAGATATCGCTGACGGACCCAGACAGCCGCGCGATGCATCCGTCGAGCCGTGTGAGCGTCGGCTA
CAATGTTCAGATTGCCGTTGACACCAAGCATAAGCTCATCGCCGAACAGCAAGTCCACAGCCGTGTCGCCGACCAGGGTCTGTTAGCTGAAACGGCGAAC
GCCGCACGCGAGAACTTGGCCGTGGACGAGATAAAGGCTGTCGCGGACCGAGGCTACTACAGCATGGAGGATATTGCTGCTTGTAATGCCGCCGCCGTCA
TTCCGCATGTTTGCAAGCCGAACAACAGCATCGCGGCACGCAGCGGTCATTTCACAAAAGAGATGTTCCGCTACGACGCGGTGGCCGATGTCTATATTTG
CCCTGGAAGCCAAACTCTTGAACCAAGATATGTCGACAAGACACGGGGCCCGACGAAGATCGAGTATTGCAATCGTGCCGCCTGTCGGACCTGCGATCTT
CGTTCCCTCTGCACCAACGGCTCATATCGCAAGATCACCCGGGCCGAGGACGAAGCCTTGCTGGAGCAAATGGCGGAGCGCTTGCGCGCAAGGCCAGAAC
TTCTGGATATACGTCGTGAGACCGTTGAACATCCATTCGGCACAATCAAGCAGTGGATGGGACAAGGTGCATTCCTGATGAGGCGTCTCGAAAACGTGCG
GGGCGAGTTCAGCCTGACGGCGCTGGCGTACAACATCCGTCGGGCAATCACCCTGGTTGGCGTTTCCGGTCTGATTGCAGCAGCTGCCAACTGAAATCTG
GTGCAGTTATGTCCGCAGCCGCAAGACGCGGCTACAACGCTCTAGGATTACAAGGTTTTTGGCTAACTAAGCACGAAATGCTGCGCAAAAGCGCACAAGA
TGACGAGCAGAACAAACGGACCGAGTTCCCTGCAATTCCTCCGGGTTTTCACACGGTCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1455 bp | 484 aa | 40 | 1494 | + | No |
Chemistry : DDE
ORF sequence :
MRVICSVMAHISGDDRSQLLLLPESVDDYVAPDNPVRFIEAFVDSLDLEACGFARVRGKATGRPGYNPADLLKLYIYGYLNRVRSSRRLEIETRRNIEVI
WLMRRLSPDFKTIADFRRDNRAAFRQVFRAFVVLCRELDLYGRELVAVDGTRLKAVNSRDRNFTKAKLERSLRESEEKLDRYLKQLDIADKDDVDGADPS
KAKDLQAKIAKVRERRVHLEACQSDLAKSAEDQISLTDPDSRAMHPSSRVSVGYNVQIAVDTKHKLIAEQQVHSRVADQGLLAETANAARENLAVDEIKA
VADRGYYSMEDIAACNAAAVIPHVCKPNNSIAARSGHFTKEMFRYDAVADVYICPGSQTLEPRYVDKTRGPTKIEYCNRAACRTCDLRSLCTNGSYRKIT
RAEDEALLEQMAERLRARPELLDIRRETVEHPFGTIKQWMGQGAFLMRRLENVRGEFSLTALAYNIRRAITLVGVSGLIAAAAN
WLMRRLSPDFKTIADFRRDNRAAFRQVFRAFVVLCRELDLYGRELVAVDGTRLKAVNSRDRNFTKAKLERSLRESEEKLDRYLKQLDIADKDDVDGADPS
KAKDLQAKIAKVRERRVHLEACQSDLAKSAEDQISLTDPDSRAMHPSSRVSVGYNVQIAVDTKHKLIAEQQVHSRVADQGLLAETANAARENLAVDEIKA
VADRGYYSMEDIAACNAAAVIPHVCKPNNSIAARSGHFTKEMFRYDAVADVYICPGSQTLEPRYVDKTRGPTKIEYCNRAACRTCDLRSLCTNGSYRKIT
RAEDEALLEQMAERLRARPELLDIRRETVEHPFGTIKQWMGQGAFLMRRLENVRGEFSLTALAYNIRRAITLVGVSGLIAAAAN
Blast result :
Comments
ISPye18 is 65% aa similar to ISPa76.
ISPye18 was identified by in silico sequence analysis of Paracoccus yeei strains: FDAARGOS_252 (1 copy) and CCUG 32053 (1 copy, reconstructed).
ISPye18 was identified by in silico sequence analysis of Paracoccus yeei strains: FDAARGOS_252 (1 copy) and CCUG 32053 (1 copy, reconstructed).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.