ISPye30
- Family IS701
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP020441 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 |
DNA section
IS Length : 1417 bp
Ends
IR Length : 14/18
IRL : CCTTACATTTGCGTTCTCATCTGATCCCTGAATCACTGGGTTGCCATGAT
IRR : CATTACGGTTGCGTTTTCGGTTTGATATGAGCCTGTCTTGCGGCGGCCTG
Comments : Ends based on alignment with ISPye15.
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| gggaaacgcc | CTAG | ctgtttgatc | 4 |
DNA sequence
CCTTACATTTGCGTTCTCATCTGATCCCTGAATCACTGGGTTGCCATGATTTAGATGAGGTCATGGATGTCGGGATTGGCTGTCGAGGAAACGTTGGAGC
TTTGGGCTTCGTCGCTTCGGGACGTGAAGTCGCGGATGCGGGTTCTGTTCACACAGGAACGGGTTGCGGCATCGTCCGGTCAGTTTCTGGATGGCCTGCT
GGGAAACGAACGGCGCAAGACCGGCTGGATGCGGGCGGAAGCCGCAGGCGACAAGGGTCCCTGGCGGCAGCAGGCGATCCTCGGTCGGGTGCCTTGGGAT
GCCGATGCCTTGCGCGATATCGTGCGCGACTATGCGCTGGAGACCTTGGCCGATCCCGATGCCGTTCTGGTCATCGATGAAACCGGCTTTCTGAAACAGG
GCCATGCCTCCTGTGGGGTCGCGCGCCAATATACCGGCTCGGCGGGCAAGATCACCAATTGCCAGATCGGGGTCTTCGCCGCTTATGTTTCACGTCATGG
ACATGCCTTCATCGACCGGGCGCTCTATCTGCCGAAGGCTTGGGCGGGCGATCCCGAACGGCGCCGCAAGGCCCATGTGCCGCAGGAACTCGGCTTCGCC
ACTAAACCCGCGATCGCGCGTAACATGATCGAGCGGGCGCTGGCAGCAGGGGTGCCGTTTTCTTGGGTAGCGGCGGGCAGCGTCCATGGGGTCGGCGATA
TCGGGATGGCGCTGCGGCGTGCCGGCAAGGGATATGTGCTTGGGGTCAGCGTAAAGCATGGGTTCAACTCTTGGGACAAACCTTATGCCGTTGCCGGAAC
CGCGAAGGATATCGCCGCAGACCTGCCGCCGGAGGTCTGGCAACGCCTGTCCGCTGGCGCGGGCACAAAGGGCGAGCGCCTGCATGACTGGGCCTATATC
GAACTGGCCGATCTCGATGCCGCGGATTTCGACGCGGATTTCGGCAGACTCTGGACCCGAGGTCTGCTGATCCGCCGCAATATCTCTGACGGCGATCTGG
CCTTCTTCTCGACCTGGTGTTCGCAGGGGACGCCTATGGAAGCACTGGTGCGGGTGGAGGGCCACCGATGGGCGATCGAGGACAGCTTCGAGACCGCGAA
GAACGAGCTTGGCCTCGATCACAACGAGACGCGCTCGTGGCACGGCTGGCACCGCCATGTTTCCCTGGTCATGCTGGCCTTCGCCATGATGGCCGTCATC
CGCCATCATGCCAATGCCGCGCCACCCCCAAAAACGATGCGCAGGACCCATCGCCACCCCTGATCCGATGGTCTGTCCAGGAAATCCGCCGCATCGCCAA
TCGCATGGCACAGCGTCAAATCCAGCCCGCACAGATCATCGCGTGGTCGCTGTGGCGAAGGGCGCATCAGGCCGCCGCAAGACAGGCTCATATCAAACCG
AAAACGCAACCGTAATG
TTTGGGCTTCGTCGCTTCGGGACGTGAAGTCGCGGATGCGGGTTCTGTTCACACAGGAACGGGTTGCGGCATCGTCCGGTCAGTTTCTGGATGGCCTGCT
GGGAAACGAACGGCGCAAGACCGGCTGGATGCGGGCGGAAGCCGCAGGCGACAAGGGTCCCTGGCGGCAGCAGGCGATCCTCGGTCGGGTGCCTTGGGAT
GCCGATGCCTTGCGCGATATCGTGCGCGACTATGCGCTGGAGACCTTGGCCGATCCCGATGCCGTTCTGGTCATCGATGAAACCGGCTTTCTGAAACAGG
GCCATGCCTCCTGTGGGGTCGCGCGCCAATATACCGGCTCGGCGGGCAAGATCACCAATTGCCAGATCGGGGTCTTCGCCGCTTATGTTTCACGTCATGG
ACATGCCTTCATCGACCGGGCGCTCTATCTGCCGAAGGCTTGGGCGGGCGATCCCGAACGGCGCCGCAAGGCCCATGTGCCGCAGGAACTCGGCTTCGCC
ACTAAACCCGCGATCGCGCGTAACATGATCGAGCGGGCGCTGGCAGCAGGGGTGCCGTTTTCTTGGGTAGCGGCGGGCAGCGTCCATGGGGTCGGCGATA
TCGGGATGGCGCTGCGGCGTGCCGGCAAGGGATATGTGCTTGGGGTCAGCGTAAAGCATGGGTTCAACTCTTGGGACAAACCTTATGCCGTTGCCGGAAC
CGCGAAGGATATCGCCGCAGACCTGCCGCCGGAGGTCTGGCAACGCCTGTCCGCTGGCGCGGGCACAAAGGGCGAGCGCCTGCATGACTGGGCCTATATC
GAACTGGCCGATCTCGATGCCGCGGATTTCGACGCGGATTTCGGCAGACTCTGGACCCGAGGTCTGCTGATCCGCCGCAATATCTCTGACGGCGATCTGG
CCTTCTTCTCGACCTGGTGTTCGCAGGGGACGCCTATGGAAGCACTGGTGCGGGTGGAGGGCCACCGATGGGCGATCGAGGACAGCTTCGAGACCGCGAA
GAACGAGCTTGGCCTCGATCACAACGAGACGCGCTCGTGGCACGGCTGGCACCGCCATGTTTCCCTGGTCATGCTGGCCTTCGCCATGATGGCCGTCATC
CGCCATCATGCCAATGCCGCGCCACCCCCAAAAACGATGCGCAGGACCCATCGCCACCCCTGATCCGATGGTCTGTCCAGGAAATCCGCCGCATCGCCAA
TCGCATGGCACAGCGTCAAATCCAGCCCGCACAGATCATCGCGTGGTCGCTGTGGCGAAGGGCGCATCAGGCCGCCGCAAGACAGGCTCATATCAAACCG
AAAACGCAACCGTAATG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1197 bp | 398 aa | 67 | 1263 | + | No |
Chemistry : DDE
ORF sequence :
MSGLAVEETLELWASSLRDVKSRMRVLFTQERVAASSGQFLDGLLGNERRKTGWMRAEAAGDKGPWRQQAILGRVPWDADALRDIVRDYALETLADPDAV
LVIDETGFLKQGHASCGVARQYTGSAGKITNCQIGVFAAYVSRHGHAFIDRALYLPKAWAGDPERRRKAHVPQELGFATKPAIARNMIERALAAGVPFSW
VAAGSVHGVGDIGMALRRAGKGYVLGVSVKHGFNSWDKPYAVAGTAKDIAADLPPEVWQRLSAGAGTKGERLHDWAYIELADLDAADFDADFGRLWTRGL
LIRRNISDGDLAFFSTWCSQGTPMEALVRVEGHRWAIEDSFETAKNELGLDHNETRSWHGWHRHVSLVMLAFAMMAVIRHHANAAPPPKTMRRTHRHP
LVIDETGFLKQGHASCGVARQYTGSAGKITNCQIGVFAAYVSRHGHAFIDRALYLPKAWAGDPERRRKAHVPQELGFATKPAIARNMIERALAAGVPFSW
VAAGSVHGVGDIGMALRRAGKGYVLGVSVKHGFNSWDKPYAVAGTAKDIAADLPPEVWQRLSAGAGTKGERLHDWAYIELADLDAADFDADFGRLWTRGL
LIRRNISDGDLAFFSTWCSQGTPMEALVRVEGHRWAIEDSFETAKNELGLDHNETRSWHGWHRHVSLVMLAFAMMAVIRHHANAAPPPKTMRRTHRHP
Blast result :
Comments
ISPye30 is 91% aa similar to ISPye30.
ISPye30 was identified by in silico sequence analysis of Paracoccus yeei strain FDAARGOS_252.
ISPye30 was identified by in silico sequence analysis of Paracoccus yeei strain FDAARGOS_252.
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.