ISPye17
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP020442 | ND | Paracoccus yeei | Paracoccus yeei Paracoccus yeei FDAARGOS_252 |
DNA section
IS Length : 1529 bp
Ends
IR Length : 10/11
IRL : TAGACCCCATGATCGCCGAGTGAGTTGACTGGGTCTGTGGCCTCTCCCGC
IRR : TCTCATGATCGCAGTCAACCCCTTATTCCATGACGTTTAATCCGGCTTTG
Comments : The IR of this IS are not at its termini. IRL is separated 7 nt from the left-hand end of the element and 3 nt separate IRR from the right-hand end.
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| tggcgacGCAT | GCAggccgct | 0 | |
| ctgagggcctT | acaggccgct | 0 | |
| tgatatccgtT | acagggtgct | 0 | |
| ctatgagcccT | acaggccgct | 0 | |
| aattgaccttT | gcaggccgct | 0 | |
| aagtgcccgtT | acagggtgct | 0 | |
| gaaagtcagcT | gcaggccgct | 0 | |
| aggcatatacT | gcaggccgct | 0 |
DNA sequence
TAGACCCCATGATCGCCGAGTGAGTTGACTGGGTCTGTGGCCTCTCCCGCGGCATTCTCCGTTCGAGGGTTGCGCCAGATTGGCTGGTGCCGAGCCTCAA
GAATGGGGGAGAGACCGCATGGAGCATACCACGTTTATCGGGCTGGACGTCCACAAGGCGTCGATCTCGGTCGCCGTTGCGCAGGGCATGCGCGGCGGCG
AGGTCCGACACCTGGGATCGGTCCCGAACCGTCCGGATCACATTCGCAAGCTGGTGGAGAAGCTGGCCTCGGCTGGGGCGCAACTGCAGTTCTGTTACGA
GGCCGGTCCCTGCGGCTATGGCCTGCACCGCCAGCTTGTTGCGATGGGGCACGACTGCAGCGTGATCGCGCCCTCGCTGATCCCGTTGAAGGCCGGAGAT
CGGGTAAAGACCGACCGTCGCGACGCGGTGATGCTGGCCAAGCTGCATCGAGCGGGTGAGCTGACGGCGGTCTGGGTGCCGGATGCGGCACATGAGGCGA
TGCGCGATCTGGTCCGCGCGCGGGCGACGGCGATGCGGGTGGCGGGCAAGGCGCGCCAGCATCTGCAGGGCTTCCTGCTTCGCCACAGCCGGATCTATCC
CGGCAAAAAGGGTTGGACCGGGGCTTACCGGCGCTGGCTTGCGCTGGTCCGCTTCACGCATCCGGCGCAACAGATCGTCCTGCAGGATTACATCGACGCG
GTCGCCGATGCCGAGGCGCGGGTCGAGCGGCTGACAGAACAGATCGCGGACCTGCTGCCGCACTGGAGCCTTGCGCCGGTTGTGGAGGCCGTCCAAGCGA
TGCGTGGGGTTGGGTTCATCGTTGCCGTGACGGTGGTGGCCGAGGTGGGCGACTTCGGGCGTTTCGATACGCCGCGTCAGTTGATGGCCTATTTGGGGCT
GACGCCCTCGGAACATTCCAGCGGTGCCAGCGTGCGGCGGGGCGGGATCACCAAGGCAGGCAGCGGTCTCGCCAGGCGCGCGCTGATCGAGGGGGCCTGG
AGCTACCGGATGCAGGCGCGGATCAGCGTGAAGCTGCTGGCCCGGCTCGAGGCCTTGCCCAAGGTGGTGCGCGACATCGCCTGGAAGGGTCAGCTCCGGA
TGTGCCAGCGCTACCGGCACCTGATCGCGGTCGGCAAGGCGAAGGTCGTGGCGGTGACCGCGATCGCGCGCGAGATGCTGGGCTTTGTCTGGGCCATCGC
CCGGGCCGTGACTGCGCCACCCGCCAGCCCGGACGCCACTGCAGCCTAAAGAAGGGAAGATCGCCCAGATCAGGCCGATGCACAGGGCTGGGGGCGGAAC
GCGGTGGGGAACCCTCGTGCCCTGTTATGGGCCGACACAGTCGATGCCCGATCTTTAGACCGAGGCAGCCCCAGGACGTAACCACGGTCATGCGGTAGCC
AACCCGCGCATGAGAGCTTGCTCAACCGTCGTCTCGGTTCCGCCTCCTGCCCTGCGCATCCACATCACGACGGGCCCGGCAAAGCCGGATTAAACGTCAT
GGAATAAGGGGTTGACTGCGATCATGAGA
GAATGGGGGAGAGACCGCATGGAGCATACCACGTTTATCGGGCTGGACGTCCACAAGGCGTCGATCTCGGTCGCCGTTGCGCAGGGCATGCGCGGCGGCG
AGGTCCGACACCTGGGATCGGTCCCGAACCGTCCGGATCACATTCGCAAGCTGGTGGAGAAGCTGGCCTCGGCTGGGGCGCAACTGCAGTTCTGTTACGA
GGCCGGTCCCTGCGGCTATGGCCTGCACCGCCAGCTTGTTGCGATGGGGCACGACTGCAGCGTGATCGCGCCCTCGCTGATCCCGTTGAAGGCCGGAGAT
CGGGTAAAGACCGACCGTCGCGACGCGGTGATGCTGGCCAAGCTGCATCGAGCGGGTGAGCTGACGGCGGTCTGGGTGCCGGATGCGGCACATGAGGCGA
TGCGCGATCTGGTCCGCGCGCGGGCGACGGCGATGCGGGTGGCGGGCAAGGCGCGCCAGCATCTGCAGGGCTTCCTGCTTCGCCACAGCCGGATCTATCC
CGGCAAAAAGGGTTGGACCGGGGCTTACCGGCGCTGGCTTGCGCTGGTCCGCTTCACGCATCCGGCGCAACAGATCGTCCTGCAGGATTACATCGACGCG
GTCGCCGATGCCGAGGCGCGGGTCGAGCGGCTGACAGAACAGATCGCGGACCTGCTGCCGCACTGGAGCCTTGCGCCGGTTGTGGAGGCCGTCCAAGCGA
TGCGTGGGGTTGGGTTCATCGTTGCCGTGACGGTGGTGGCCGAGGTGGGCGACTTCGGGCGTTTCGATACGCCGCGTCAGTTGATGGCCTATTTGGGGCT
GACGCCCTCGGAACATTCCAGCGGTGCCAGCGTGCGGCGGGGCGGGATCACCAAGGCAGGCAGCGGTCTCGCCAGGCGCGCGCTGATCGAGGGGGCCTGG
AGCTACCGGATGCAGGCGCGGATCAGCGTGAAGCTGCTGGCCCGGCTCGAGGCCTTGCCCAAGGTGGTGCGCGACATCGCCTGGAAGGGTCAGCTCCGGA
TGTGCCAGCGCTACCGGCACCTGATCGCGGTCGGCAAGGCGAAGGTCGTGGCGGTGACCGCGATCGCGCGCGAGATGCTGGGCTTTGTCTGGGCCATCGC
CCGGGCCGTGACTGCGCCACCCGCCAGCCCGGACGCCACTGCAGCCTAAAGAAGGGAAGATCGCCCAGATCAGGCCGATGCACAGGGCTGGGGGCGGAAC
GCGGTGGGGAACCCTCGTGCCCTGTTATGGGCCGACACAGTCGATGCCCGATCTTTAGACCGAGGCAGCCCCAGGACGTAACCACGGTCATGCGGTAGCC
AACCCGCGCATGAGAGCTTGCTCAACCGTCGTCTCGGTTCCGCCTCCTGCCCTGCGCATCCACATCACGACGGGCCCGGCAAAGCCGGATTAAACGTCAT
GGAATAAGGGGTTGACTGCGATCATGAGA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1131 bp | 376 aa | 119 | 1249 | + | No |
Chemistry : DEDD
ORF sequence :
MEHTTFIGLDVHKASISVAVAQGMRGGEVRHLGSVPNRPDHIRKLVEKLASAGAQLQFCYEAGPCGYGLHRQLVAMGHDCSVIAPSLIPLKAGDRVKTDR
RDAVMLAKLHRAGELTAVWVPDAAHEAMRDLVRARATAMRVAGKARQHLQGFLLRHSRIYPGKKGWTGAYRRWLALVRFTHPAQQIVLQDYIDAVADAEA
RVERLTEQIADLLPHWSLAPVVEAVQAMRGVGFIVAVTVVAEVGDFGRFDTPRQLMAYLGLTPSEHSSGASVRRGGITKAGSGLARRALIEGAWSYRMQA
RISVKLLARLEALPKVVRDIAWKGQLRMCQRYRHLIAVGKAKVVAVTAIAREMLGFVWAIARAVTAPPASPDATAA
RDAVMLAKLHRAGELTAVWVPDAAHEAMRDLVRARATAMRVAGKARQHLQGFLLRHSRIYPGKKGWTGAYRRWLALVRFTHPAQQIVLQDYIDAVADAEA
RVERLTEQIADLLPHWSLAPVVEAVQAMRGVGFIVAVTVVAEVGDFGRFDTPRQLMAYLGLTPSEHSSGASVRRGGITKAGSGLARRALIEGAWSYRMQA
RISVKLLARLEALPKVVRDIAWKGQLRMCQRYRHLIAVGKAKVVAVTAIAREMLGFVWAIARAVTAPPASPDATAA
Blast result :
Comments
ISPye17 is 74% aa similar to ISSfr2.
ISPye17 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strain FDAARGOS_252 (8 copies of ISPye17 and isoforms present in the genome).
ISPye17 was identified by in silico nucleotide sequence analysis of Paracoccus yeei strain FDAARGOS_252 (8 copies of ISPye17 and isoforms present in the genome).
References
1] Chmielowska C., Szuplewska M., Bartosik D. (2018) Direct submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.
2] Goldberg,B., Campos,J., Tallon,L., Sadzewicz,L., Sengamalay,N., Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S. and Sichtig,H. (2017) Direct GenBank submission.