ISEc81

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010498 ND Escherichia coli
Escherichia coli
Escherichia coli SMS-3-5
Escherichia fergusonii B253
Shigella boydii BCW_4868
Kluyvera georgiana YDC799
Klebsiella quasivariicola KPN1705
DNA section
IS Length : 1385 bp

Ends


IR Length : 11

IRL : AATGAGATGGACGCTCCAGATTTTACGGTATCAAAGTACCAGACTGGATC
IRR : TATATGGACGCTCCCGGAATGCAATGCTTTCTTCAGTTATGTAATAAAAC

Comments : The IR of this IS are not at its termini, according to the rules defined for this group IS1111. In the IS sequence as given 6 nt separate IRL from the left-hand end of the element and 3 nt separate IRR from the right-hand end.

Insertion site


Left flankDirect repeatRight flankDR Length
GCGTTTTACAGGGATTGTTACCTCGCGCC0

DNA sequence

AATGAGATGGACGCTCCAGATTTTACGGTATCAAAGTACCAGACTGGATCGTTGCAATACGTCCTGAAAAATTAGGAGCGTCCACATGAAAGTATCAACT
CTTGGTATCGACCTGGCAAAGAACGTTTTTCAGCTTCATGGTGTCGATCATGAAGGCCATACTATTTTGCGTAAAAAGCTCACCCGGGCTAAGTTTGTTC
AGTTTGTGATTCAACTGGAACCTTGTCTGATTGGCATGGAAGCCTGCTCATCCAGTCATTATTTTGCGCGATTATTCACCCGCTATGGTCATGAGGTAAA
ACTCATACCTCCGCAGTATGTGAAGCCTTATGTGAAAACGAACAAGACGGATGCAACAGATGCTGAAGCAATCTGCGAAGCGGTAACACGTCCGAATATG
CGTTTTGTTCAGATAAAAACCGAAGAGCAGCAGGCCGTTTTAGCGTTACACACTGAACGGGGAATACTTATCCGTGAGCGGATTGCCTGTGCCAATAGTT
TAAGAGCCACACTTGCTGAGTTTGGTATTACGATTGCGGCCGGACAAAACCATTTAACCCGTGAGCTGCCAGCCATTCTGGAGGATGGCGAAAATGGTTT
ATCTCCCTTTGTCAGAACCAGCATCTACAGACAGTCTAAACATATCCGGGAACTTGAAGAACAAGTTAAACAGGTAGAAGAAGCTCTGGCCTCCTGGTAT
AGAACGCAGGAAGCCTGCCAGAGAATGGCCAAGATCCCGGGGGTTGGCATGCTAACGGCCACTTATGTGGTAGCAGCAGTGGGTAATGCCCGACAATTCA
GTACCGCAAAGCAGTTCGCTTCATGGCTGGGGCTGACACCAAAGGAACATTCCAGCGGCGGGAAACAGCAACTGGGAGGGATCAGCAAACGTGGAGATGG
ATATTTCCGATACCTGCTGGTTCACGGCGCACGCGCACTTACCGCCAGGGTCAACCGAAACGGCGCGGTTGAGAAGAATTCCTGGCTTCAGGGACTCCTT
GAGCGGAAGCACTACAATGTAGCTGTTGTCGCCATGGCGGCAAAAACAGCGAGGATCATGTGGTCAATGTTGTCACACAATACTGAATATCAACCTCGGC
AGCTCGCCTGACACAAGGTCAGTCAATCTGACGAGGTGCTGAAAAAAAGTTAACGTCCTGGTAGGTGCAGGTGACTTCAGAAGATGGCAAAACAGGTAAG
ACCGCAGGCAGGATACACCGAGAGGTAACAAGGGCAAGTTAGCCCGTAGAGGATGATTGGTACCTGCCTGGCGGATTTCATCATGGTTCGGGATAAAAAT
CCCATCAGAAACCGGATATATGGCTGCACCTACCCGTTTTATTACATAACTGAAGAAAGCATTGCATTCCGGGAGCGTCCATATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa861111+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKVSTLGIDLAKNVFQLHGVDHEGHTILRKKLTRAKFVQFVIQLEPCLIGMEACSSSHYFARLFTRYGHEVKLIPPQYVKPYVKTNKTDATDAEAICEAV
TRPNMRFVQIKTEEQQAVLALHTERGILIRERIACANSLRATLAEFGITIAAGQNHLTRELPAILEDGENGLSPFVRTSIYRQSKHIRELEEQVKQVEEA
LASWYRTQEACQRMAKIPGVGMLTATYVVAAVGNARQFSTAKQFASWLGLTPKEHSSGGKQQLGGISKRGDGYFRYLLVHGARALTARVNRNGAVEKNSW
LQGLLERKHYNVAVVAMAAKTARIMWSMLSHNTEYQPRQLA

 

Blast result :
Comments
ISEc81 is 83% aa similar to ISYen1.
References
1] Xiong Liu (2018) Direct submission.
2] Fricke,W.F., Wright,M.S., Lindell,A.H., Harkins,D.M., Baker-Austin,C., Ravel,J. and Stepanauskas,R. (2008) J. Bacteriol. 190 (20), 6779-6794.