ISPsfu1
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas fulva | Pseudomonas fulva KUN1351 Pseudomonas fluorescens UK4 |
DNA section
IS Length : 1192 bp
Ends
IR Length : 14/22
IRL : GGAAACTCTGAAAAAGACTTCCAAATCTGGTGAGATACGGCTGTCCCACG
IRR : GGAAGGTCTGAAGTAAGCAGCCGTTTTTAACGGCCTCGCTGTCTGAGGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAAGAAGCGGTTGCG | CTAA | CCGATACAGTATAAATT | 4 |
ATGGCACCATCGAAAC | CTAA | GTCGTAGATGTCGGGTT | 4 |
DNA sequence
GGAAACTCTGAAAAAGACTTCCAAATCTGGTGAGATACGGCTGTCCCACGAACTGAACGGTTGAGCCCCGATGAAGCAAATGTCTTTCGCTGATGCCGAG
TACGCAGGCAAACGTAAGCAGACCCGCCGTGAGCGTTTCCTGATTGAGATGGATCAGGTCGTGCCCTGGAAAGGCCTGATTGCGTTGATCGAGCCGCATT
ATCCGAAGGGTGAAGGCGGTCGTCCGGCGTATCCGTTGATGGCCATGCTGCGGGTTCATCTGATGCAAAACTGGTTCGGCTACAGCGATCCGGCGATGGA
AGAGTCCCTCTACGAAACCACGATTCTGCGCCAGTTTGCCGGGCTGCATTTGGATCGGATTCCGGATGAAACCACGATCCTCAACTTCCGCCGGCTGTTG
GAAAAACATGAGCTGGCCGGTGGGATTTTGCAGGTCATCAACGGCTATTTGGGCGACCGAGGTTTGCTGCTGCGTCAGGGAACTGTGGTCGATGCGACGA
TCATTCATGCGCCCAGTTCGACCAAGAACAAGGACGGTAAACGCGACCCCGAAATGCACCAGACAAAGAAAGGAAATCAGTACTATTTCGGGATGAAATC
GCACATCGGTGTCGATGTTGAATCCGGTCTGGTACATAGCGTGGTGGGCACGGCGGCGAATGTGGCGGACGTGACTCAGGTCGATCAGTTGCTGCATGGC
GAGGAAACTTACGTCTCTGGCGATGCCGGTTACACCGGCGTGGAGAAGCGTGCGGAGCATCAACATCGCCAGATGATCTGGTCGATCGCAGCGCGCCCCA
GCAGCTATAAGAAGCATGCAAAAAAGAGCCTGATCGGTCGCATGCGCCGCAAAATCGAATACGCGAAAGCTCAAGTCCGGGCCAAGGTTGAGCATCCATT
CAGGGTGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGCTTCCGAGGCTTGGTGAAAAACACCGCGCAGCAGACCACACTGTTTGCCTTATCGAACCTG
TGGATGATGCGAAAACGACTGTTGAATGCAGGCGAGGTGCGCCTGTGATGTGGACAATGAGCCCTGAAAAGGTGCTATTCCGCAAAAAACAGTGAACTGA
CAGGAGGAAAGGTCTGATTTTCGATTAAGTCGGTGTTTTTTGAACCTCAGACAGCGAGGCCGTTAAAAACGGCTGCTTACTTCAGACCTTCC
TACGCAGGCAAACGTAAGCAGACCCGCCGTGAGCGTTTCCTGATTGAGATGGATCAGGTCGTGCCCTGGAAAGGCCTGATTGCGTTGATCGAGCCGCATT
ATCCGAAGGGTGAAGGCGGTCGTCCGGCGTATCCGTTGATGGCCATGCTGCGGGTTCATCTGATGCAAAACTGGTTCGGCTACAGCGATCCGGCGATGGA
AGAGTCCCTCTACGAAACCACGATTCTGCGCCAGTTTGCCGGGCTGCATTTGGATCGGATTCCGGATGAAACCACGATCCTCAACTTCCGCCGGCTGTTG
GAAAAACATGAGCTGGCCGGTGGGATTTTGCAGGTCATCAACGGCTATTTGGGCGACCGAGGTTTGCTGCTGCGTCAGGGAACTGTGGTCGATGCGACGA
TCATTCATGCGCCCAGTTCGACCAAGAACAAGGACGGTAAACGCGACCCCGAAATGCACCAGACAAAGAAAGGAAATCAGTACTATTTCGGGATGAAATC
GCACATCGGTGTCGATGTTGAATCCGGTCTGGTACATAGCGTGGTGGGCACGGCGGCGAATGTGGCGGACGTGACTCAGGTCGATCAGTTGCTGCATGGC
GAGGAAACTTACGTCTCTGGCGATGCCGGTTACACCGGCGTGGAGAAGCGTGCGGAGCATCAACATCGCCAGATGATCTGGTCGATCGCAGCGCGCCCCA
GCAGCTATAAGAAGCATGCAAAAAAGAGCCTGATCGGTCGCATGCGCCGCAAAATCGAATACGCGAAAGCTCAAGTCCGGGCCAAGGTTGAGCATCCATT
CAGGGTGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGCTTCCGAGGCTTGGTGAAAAACACCGCGCAGCAGACCACACTGTTTGCCTTATCGAACCTG
TGGATGATGCGAAAACGACTGTTGAATGCAGGCGAGGTGCGCCTGTGATGTGGACAATGAGCCCTGAAAAGGTGCTATTCCGCAAAAAACAGTGAACTGA
CAGGAGGAAAGGTCTGATTTTCGATTAAGTCGGTGTTTTTTGAACCTCAGACAGCGAGGCCGTTAAAAACGGCTGCTTACTTCAGACCTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 71 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MKQMSFADAEYAGKRKQTRRERFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRVHLMQNWFGYSDPAMEESLYETTILRQFAGLHLDRIPDE
TTILNFRRLLEKHELAGGILQVINGYLGDRGLLLRQGTVVDATIIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKSHIGVDVESGLVHSVVGTAANVAD
VTQVDQLLHGEETYVSGDAGYTGVEKRAEHQHRQMIWSIAARPSSYKKHAKKSLIGRMRRKIEYAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLVKNTAQ
QTTLFALSNLWMMRKRLLNAGEVRL
TTILNFRRLLEKHELAGGILQVINGYLGDRGLLLRQGTVVDATIIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKSHIGVDVESGLVHSVVGTAANVAD
VTQVDQLLHGEETYVSGDAGYTGVEKRAEHQHRQMIWSIAARPSSYKKHAKKSLIGRMRRKIEYAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLVKNTAQ
QTTLFALSNLWMMRKRLLNAGEVRL
Blast result :
Comments
ISPsfu1 is 96% aa similar to ISPsy45.
References
1] Yamamoto,M. (2018) Direct submission.
2] Dueholm,M.S., Danielsen,H.N. and Nielsen,P.H. (2014) Genome Announc 2 (5), e00898-14.
2] Dueholm,M.S., Danielsen,H.N. and Nielsen,P.H. (2014) Genome Announc 2 (5), e00898-14.