ISPsfu1

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas fulva
Pseudomonas fulva KUN1351
Pseudomonas fluorescens UK4
DNA section
IS Length : 1192 bp

Ends


IR Length : 14/22

IRL : GGAAACTCTGAAAAAGACTTCCAAATCTGGTGAGATACGGCTGTCCCACG
IRR : GGAAGGTCTGAAGTAAGCAGCCGTTTTTAACGGCCTCGCTGTCTGAGGTT

Insertion site


Left flankDirect repeatRight flankDR Length
TCAAGAAGCGGTTGCGCTAACCGATACAGTATAAATT4
ATGGCACCATCGAAACCTAAGTCGTAGATGTCGGGTT4

DNA sequence

GGAAACTCTGAAAAAGACTTCCAAATCTGGTGAGATACGGCTGTCCCACGAACTGAACGGTTGAGCCCCGATGAAGCAAATGTCTTTCGCTGATGCCGAG
TACGCAGGCAAACGTAAGCAGACCCGCCGTGAGCGTTTCCTGATTGAGATGGATCAGGTCGTGCCCTGGAAAGGCCTGATTGCGTTGATCGAGCCGCATT
ATCCGAAGGGTGAAGGCGGTCGTCCGGCGTATCCGTTGATGGCCATGCTGCGGGTTCATCTGATGCAAAACTGGTTCGGCTACAGCGATCCGGCGATGGA
AGAGTCCCTCTACGAAACCACGATTCTGCGCCAGTTTGCCGGGCTGCATTTGGATCGGATTCCGGATGAAACCACGATCCTCAACTTCCGCCGGCTGTTG
GAAAAACATGAGCTGGCCGGTGGGATTTTGCAGGTCATCAACGGCTATTTGGGCGACCGAGGTTTGCTGCTGCGTCAGGGAACTGTGGTCGATGCGACGA
TCATTCATGCGCCCAGTTCGACCAAGAACAAGGACGGTAAACGCGACCCCGAAATGCACCAGACAAAGAAAGGAAATCAGTACTATTTCGGGATGAAATC
GCACATCGGTGTCGATGTTGAATCCGGTCTGGTACATAGCGTGGTGGGCACGGCGGCGAATGTGGCGGACGTGACTCAGGTCGATCAGTTGCTGCATGGC
GAGGAAACTTACGTCTCTGGCGATGCCGGTTACACCGGCGTGGAGAAGCGTGCGGAGCATCAACATCGCCAGATGATCTGGTCGATCGCAGCGCGCCCCA
GCAGCTATAAGAAGCATGCAAAAAAGAGCCTGATCGGTCGCATGCGCCGCAAAATCGAATACGCGAAAGCTCAAGTCCGGGCCAAGGTTGAGCATCCATT
CAGGGTGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGCTTCCGAGGCTTGGTGAAAAACACCGCGCAGCAGACCACACTGTTTGCCTTATCGAACCTG
TGGATGATGCGAAAACGACTGTTGAATGCAGGCGAGGTGCGCCTGTGATGTGGACAATGAGCCCTGAAAAGGTGCTATTCCGCAAAAAACAGTGAACTGA
CAGGAGGAAAGGTCTGATTTTCGATTAAGTCGGTGTTTTTTGAACCTCAGACAGCGAGGCCGTTAAAAACGGCTGCTTACTTCAGACCTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa711048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQMSFADAEYAGKRKQTRRERFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRVHLMQNWFGYSDPAMEESLYETTILRQFAGLHLDRIPDE
TTILNFRRLLEKHELAGGILQVINGYLGDRGLLLRQGTVVDATIIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGMKSHIGVDVESGLVHSVVGTAANVAD
VTQVDQLLHGEETYVSGDAGYTGVEKRAEHQHRQMIWSIAARPSSYKKHAKKSLIGRMRRKIEYAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLVKNTAQ
QTTLFALSNLWMMRKRLLNAGEVRL

 

Blast result :
Comments
ISPsfu1 is 96% aa similar to ISPsy45.
References
1] Yamamoto,M. (2018) Direct submission.
2] Dueholm,M.S., Danielsen,H.N. and Nielsen,P.H. (2014) Genome Announc 2 (5), e00898-14.