ISLmo6
- Family IS30
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP022021.1 | ND | Listeria monocytogenes | Listeria monocytogenes Listeria monocytogenes strain FDA00006907 Listeria monocytogenes strain N1-011A |
DNA section
IS Length : 1056 bp
Ends
IR Length : 21/27
IRL : GATGAATTATAAAATTAAGTGCAACACCTGAACGTGAACGCAAAAAAGCC
IRR : GACGGTTTGTCAAATTAAGCGCAACACTTCCTCGGTGAAGACCTCGTGTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAAAATTTTT | ACTT | ATAATAAAAT | 4 |
DNA sequence
GATGAATTATAAAATTAAGTGCAACACCTGAACGTGAACGCAAAAAAGCCCATAGCGACGGCCTCGTGTAGAATGAAGTTACCACACAAACATTCAGACG
GAGGAATCGCTATGAGCTACACCCATCTTACCACAGCCGAACGCGTGAAAATAGAGACCTATCTGGAGCTCGGGATGTCCATCCGGTCCATCGCGAGACG
GCTCGGTCGACAGCCATCGACCGTCTCGCGGGAGATCAGACGGAACCCCGACTACGTGGCTGAACGTGCCCGGAAACGCTACGAGAAGGCGAAGACCAAC
TGCGGTGCCAAGACGAAACTCGATGACACGATGCGCCGGACGATCGTCGAGAAGCTGCGTGCGACCTGGTCCCCGGAACAGATCGTCGGCCGCCTCTACG
CAGGAAAAATTGCCTTCTCCACCATCTACCGATGGATCTACGCGGGACGGATCGACGTGCCCCTGACCGTGCTCCGCCAGAAAGGGAAACGTCAAAAGCC
GACCGAGACGCGCGGGCGCATCAACATCGGACTCCCCATCTCGCAACGGCCGCCAGAGGTCAGGGGGCGCCGGACGTTCGGGCACTGGGAGCTCGACACC
GTCGTCTCCGGACGAGGGAAGTCGAAGGCGTGCGTCGCGACGTTCATCGAGCGGAAGAGCCGGTTCTATCTCGCCCTGCCGATCGCGGACCGCACCGCGG
CCTCGATGGAGGGGGCGACCCATGCGGTGCACGGCGCCTTCCCGGACGGCACGTTCGAGACGGCGACGACGGACCGTGGCAAGGAGTTCAGCGGTCACGA
GCGCATCCAGGCGTCACTCGGTGTGCCGATGTATTTCGCCGACCCGTACGCATCGTGGCAACGGGGAAGCAACGAGAACGCCAACGGGCTCCTCCGCGAG
TTCTTCCCGAAAGGAACGGACTTCGCGCAGGTGGCGCATGACGAACTCGCGGACGCGCTGGCCAAGATCAACGGGCGACCGAGGAAGTGCCTGAACTGGA
AAACCGCACACGAGGTCTTCACCGAGGAAGTGTTGCGCTTAATTTGACAAACCGTC
GAGGAATCGCTATGAGCTACACCCATCTTACCACAGCCGAACGCGTGAAAATAGAGACCTATCTGGAGCTCGGGATGTCCATCCGGTCCATCGCGAGACG
GCTCGGTCGACAGCCATCGACCGTCTCGCGGGAGATCAGACGGAACCCCGACTACGTGGCTGAACGTGCCCGGAAACGCTACGAGAAGGCGAAGACCAAC
TGCGGTGCCAAGACGAAACTCGATGACACGATGCGCCGGACGATCGTCGAGAAGCTGCGTGCGACCTGGTCCCCGGAACAGATCGTCGGCCGCCTCTACG
CAGGAAAAATTGCCTTCTCCACCATCTACCGATGGATCTACGCGGGACGGATCGACGTGCCCCTGACCGTGCTCCGCCAGAAAGGGAAACGTCAAAAGCC
GACCGAGACGCGCGGGCGCATCAACATCGGACTCCCCATCTCGCAACGGCCGCCAGAGGTCAGGGGGCGCCGGACGTTCGGGCACTGGGAGCTCGACACC
GTCGTCTCCGGACGAGGGAAGTCGAAGGCGTGCGTCGCGACGTTCATCGAGCGGAAGAGCCGGTTCTATCTCGCCCTGCCGATCGCGGACCGCACCGCGG
CCTCGATGGAGGGGGCGACCCATGCGGTGCACGGCGCCTTCCCGGACGGCACGTTCGAGACGGCGACGACGGACCGTGGCAAGGAGTTCAGCGGTCACGA
GCGCATCCAGGCGTCACTCGGTGTGCCGATGTATTTCGCCGACCCGTACGCATCGTGGCAACGGGGAAGCAACGAGAACGCCAACGGGCTCCTCCGCGAG
TTCTTCCCGAAAGGAACGGACTTCGCGCAGGTGGCGCATGACGAACTCGCGGACGCGCTGGCCAAGATCAACGGGCGACCGAGGAAGTGCCTGAACTGGA
AAACCGCACACGAGGTCTTCACCGAGGAAGTGTTGCGCTTAATTTGACAAACCGTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 936 bp | 311 aa | 112 | 1047 | + | No |
Chemistry : DDE
ORF sequence :
MSYTHLTTAERVKIETYLELGMSIRSIARRLGRQPSTVSREIRRNPDYVAERARKRYEKAKTNCGAKTKLDDTMRRTIVEKLRATWSPEQIVGRLYAGKI
AFSTIYRWIYAGRIDVPLTVLRQKGKRQKPTETRGRINIGLPISQRPPEVRGRRTFGHWELDTVVSGRGKSKACVATFIERKSRFYLALPIADRTAASME
GATHAVHGAFPDGTFETATTDRGKEFSGHERIQASLGVPMYFADPYASWQRGSNENANGLLREFFPKGTDFAQVAHDELADALAKINGRPRKCLNWKTAH
EVFTEEVLRLI
AFSTIYRWIYAGRIDVPLTVLRQKGKRQKPTETRGRINIGLPISQRPPEVRGRRTFGHWELDTVVSGRGKSKACVATFIERKSRFYLALPIADRTAASME
GATHAVHGAFPDGTFETATTDRGKEFSGHERIQASLGVPMYFADPYASWQRGSNENANGLLREFFPKGTDFAQVAHDELADALAKINGRPRKCLNWKTAH
EVFTEEVLRLI
Blast result :
Comments
ISLmo6 is 68% aa similar to ISSau1.
ISLmo6 was identified by in silico nucleotide sequence analysis of Listeria monocytogenes strain FDA00006907 plasmid pCFSAN021445. Isoform of ISLmo6 present in Exiguobacterium sp. S3-2 plasmid pMC1.
ISLmo6 was identified by in silico nucleotide sequence analysis of Listeria monocytogenes strain FDA00006907 plasmid pCFSAN021445. Isoform of ISLmo6 present in Exiguobacterium sp. S3-2 plasmid pMC1.
References
1] Chmielowska, C. and Bartosik, D. (2018) Direct submission.