ISC1058

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ270982 Y Sulfolobus solfataricus
Sulfolobus solfataricus P1-17
DNA section
IS Length : 1058 bp

Ends


IR Length : 15/19

IRL : TGCTTTGTGGATTGCTTCAGAATTGTACAAAAAGTTTATAAATTATTCGT
IRR : TACTTTGTTGATTTGTTCAATTTGTCTCATTAAAACGATATTGTATAACA

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNTTTTCACAGNNNNNNNNNN9
NNNNNNNNNNTTCACAGAGNNNNNNNNNN9
NNNNNNNNNNACTCGAAAGNNNNNNNNNN9

DNA sequence

TGCTTTGTGGATTGCTTCAGAATTGTACAAAAAGTTTATAAATTATTCGTTTAAGTATTACCTATGGAAAAGAGTAAGTACAAGAGGGACTGGAGCAAGT
ACGACGAGAACGTCATTACTAGATATAAGTTGATGTTCCCCTTCTACGTATTCGAACATTGGTGGGACTTATTAGCAGAGGAGAACAGGAACGCTAGGAC
AAAGTATAAAGCTCCGAAGGAGTTCGACGAATTCCTAGCCTTCCTCCACATCTTCCTACCTTACAGAGCAATAGAAGGAGTATTAAGAGCCTTAGAACAA
TTGAAGATCATCCCCACAAGCCTCGATTACTCAACAATATGGAAGAGAGTGAGGAACATGAAAATAACCTTCCCCGAGGCAAGTGACGAACTTGAAGTAA
TTGCAGACGCTACAGGCATTAGCACAAACACGGGAGGACAATACATTGTTGCCAAGTGGGGTAAGACTAGGGATTCAAAATTCCTCAAGATCGAGATAGT
AATGGACAATAACGAATTCAACGTGATAAACGCTGAGGTCACTAGCAACGAGGTTGAAAGCGCTGTAAAAACAGTTAAGGATCTTCAAGATAAGGGAAAG
AAGGTCAAGAAGTTTTATGGAGATAAGACATATGACGCCAATGAGGTTTACAAGACCGGAGTTGAGGTTGTAGTTCCTCCCAAGAAGAACGCTTCTACTA
AAAGGGGCCATCTTGCTAGACGTAAGGCTGTGCGGGAGTTTAGGAAGTTGGGTTATGATCGTTGGAGGGAGGAGAAGGGTTATGGCGTTAGGTGGAGGGT
CGAGTCCTTGTTCTCTGCGGTGAAGCGTACTTTTGGGGAATCGGTTAGGGCAACAAGTTTTGCTGGACAAGTAGTTGAGGCTAAGCTCAAGTTCTGGGCT
TACGCGTGGATGGTTCACTTGGCGAATTCTGTAGTCGGTAGGGCTCCGGGCATTAGGGTGTAAGCTTGAGAGGAACGTTGAAATAAATATTAATTACTGA
AAAATTAGTGTTATACAATATCGTTTTAATGAGACAAATTGAACAAATCAACAAAGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
900 bp289 aa64963+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEKSKYKRDWSKYDENVITRYKLMFPFYVFEHWWDLLAEENRNARTKYKAPKEFDEFLAFLHIFLPYRAIEGVLRALEQLKIIPTSLDYSTIWKRVRNMK
ITFPEASDELEVIADATGISTNTGGQYIVAKWGKTRDSKFLKIEIVMDNNEFNVINAEVTSNEVESAVKTVKDLQDKGKKVKKFYGDKTYDANEVYKTGV
EVVVPPKKNASTKRGHLARRKAVREFRKLGYDRWREEKGYGVRWRVESLFSAVKRTFGESVRATSFAGQVVEAKLKFWAYAWMVHLANSVVGRAPGIRV

 

Blast result :
Comments
There are 12 copies of ISC1058 in Sulfolobus solfataricus. No copies were found in S. shibatae , S. acidocaldarius , and Acidianus ambivalens.
47% aa similar to IS102.
References
1] Martusewitsch,E., Sensen,C.W. and Schleper,C.(2000) J.Bacteriol. 182 2574-2581