ISC1058
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ270982 | Y | Sulfolobus solfataricus | Sulfolobus solfataricus P1-17 |
DNA section
IS Length : 1058 bp
Ends
IR Length : 15/19
IRL : TGCTTTGTGGATTGCTTCAGAATTGTACAAAAAGTTTATAAATTATTCGT
IRR : TACTTTGTTGATTTGTTCAATTTGTCTCATTAAAACGATATTGTATAACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TTTTCACAG | NNNNNNNNNN | 9 |
NNNNNNNNNN | TTCACAGAG | NNNNNNNNNN | 9 |
NNNNNNNNNN | ACTCGAAAG | NNNNNNNNNN | 9 |
DNA sequence
TGCTTTGTGGATTGCTTCAGAATTGTACAAAAAGTTTATAAATTATTCGTTTAAGTATTACCTATGGAAAAGAGTAAGTACAAGAGGGACTGGAGCAAGT
ACGACGAGAACGTCATTACTAGATATAAGTTGATGTTCCCCTTCTACGTATTCGAACATTGGTGGGACTTATTAGCAGAGGAGAACAGGAACGCTAGGAC
AAAGTATAAAGCTCCGAAGGAGTTCGACGAATTCCTAGCCTTCCTCCACATCTTCCTACCTTACAGAGCAATAGAAGGAGTATTAAGAGCCTTAGAACAA
TTGAAGATCATCCCCACAAGCCTCGATTACTCAACAATATGGAAGAGAGTGAGGAACATGAAAATAACCTTCCCCGAGGCAAGTGACGAACTTGAAGTAA
TTGCAGACGCTACAGGCATTAGCACAAACACGGGAGGACAATACATTGTTGCCAAGTGGGGTAAGACTAGGGATTCAAAATTCCTCAAGATCGAGATAGT
AATGGACAATAACGAATTCAACGTGATAAACGCTGAGGTCACTAGCAACGAGGTTGAAAGCGCTGTAAAAACAGTTAAGGATCTTCAAGATAAGGGAAAG
AAGGTCAAGAAGTTTTATGGAGATAAGACATATGACGCCAATGAGGTTTACAAGACCGGAGTTGAGGTTGTAGTTCCTCCCAAGAAGAACGCTTCTACTA
AAAGGGGCCATCTTGCTAGACGTAAGGCTGTGCGGGAGTTTAGGAAGTTGGGTTATGATCGTTGGAGGGAGGAGAAGGGTTATGGCGTTAGGTGGAGGGT
CGAGTCCTTGTTCTCTGCGGTGAAGCGTACTTTTGGGGAATCGGTTAGGGCAACAAGTTTTGCTGGACAAGTAGTTGAGGCTAAGCTCAAGTTCTGGGCT
TACGCGTGGATGGTTCACTTGGCGAATTCTGTAGTCGGTAGGGCTCCGGGCATTAGGGTGTAAGCTTGAGAGGAACGTTGAAATAAATATTAATTACTGA
AAAATTAGTGTTATACAATATCGTTTTAATGAGACAAATTGAACAAATCAACAAAGTA
ACGACGAGAACGTCATTACTAGATATAAGTTGATGTTCCCCTTCTACGTATTCGAACATTGGTGGGACTTATTAGCAGAGGAGAACAGGAACGCTAGGAC
AAAGTATAAAGCTCCGAAGGAGTTCGACGAATTCCTAGCCTTCCTCCACATCTTCCTACCTTACAGAGCAATAGAAGGAGTATTAAGAGCCTTAGAACAA
TTGAAGATCATCCCCACAAGCCTCGATTACTCAACAATATGGAAGAGAGTGAGGAACATGAAAATAACCTTCCCCGAGGCAAGTGACGAACTTGAAGTAA
TTGCAGACGCTACAGGCATTAGCACAAACACGGGAGGACAATACATTGTTGCCAAGTGGGGTAAGACTAGGGATTCAAAATTCCTCAAGATCGAGATAGT
AATGGACAATAACGAATTCAACGTGATAAACGCTGAGGTCACTAGCAACGAGGTTGAAAGCGCTGTAAAAACAGTTAAGGATCTTCAAGATAAGGGAAAG
AAGGTCAAGAAGTTTTATGGAGATAAGACATATGACGCCAATGAGGTTTACAAGACCGGAGTTGAGGTTGTAGTTCCTCCCAAGAAGAACGCTTCTACTA
AAAGGGGCCATCTTGCTAGACGTAAGGCTGTGCGGGAGTTTAGGAAGTTGGGTTATGATCGTTGGAGGGAGGAGAAGGGTTATGGCGTTAGGTGGAGGGT
CGAGTCCTTGTTCTCTGCGGTGAAGCGTACTTTTGGGGAATCGGTTAGGGCAACAAGTTTTGCTGGACAAGTAGTTGAGGCTAAGCTCAAGTTCTGGGCT
TACGCGTGGATGGTTCACTTGGCGAATTCTGTAGTCGGTAGGGCTCCGGGCATTAGGGTGTAAGCTTGAGAGGAACGTTGAAATAAATATTAATTACTGA
AAAATTAGTGTTATACAATATCGTTTTAATGAGACAAATTGAACAAATCAACAAAGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
900 bp | 289 aa | 64 | 963 | + | No |
Chemistry : DDE
ORF sequence :
MEKSKYKRDWSKYDENVITRYKLMFPFYVFEHWWDLLAEENRNARTKYKAPKEFDEFLAFLHIFLPYRAIEGVLRALEQLKIIPTSLDYSTIWKRVRNMK
ITFPEASDELEVIADATGISTNTGGQYIVAKWGKTRDSKFLKIEIVMDNNEFNVINAEVTSNEVESAVKTVKDLQDKGKKVKKFYGDKTYDANEVYKTGV
EVVVPPKKNASTKRGHLARRKAVREFRKLGYDRWREEKGYGVRWRVESLFSAVKRTFGESVRATSFAGQVVEAKLKFWAYAWMVHLANSVVGRAPGIRV
ITFPEASDELEVIADATGISTNTGGQYIVAKWGKTRDSKFLKIEIVMDNNEFNVINAEVTSNEVESAVKTVKDLQDKGKKVKKFYGDKTYDANEVYKTGV
EVVVPPKKNASTKRGHLARRKAVREFRKLGYDRWREEKGYGVRWRVESLFSAVKRTFGESVRATSFAGQVVEAKLKFWAYAWMVHLANSVVGRAPGIRV
Blast result :
Comments
There are 12 copies of ISC1058 in Sulfolobus solfataricus. No copies were found in S. shibatae , S. acidocaldarius , and Acidianus ambivalens.
47% aa similar to IS102.
47% aa similar to IS102.
References
1] Martusewitsch,E., Sensen,C.W. and Schleper,C.(2000) J.Bacteriol. 182 2574-2581