ISSlu1

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003025.1 ND Streptococcus lutetiensis
Streptococcus lutetiensis 033
DNA section
IS Length : 1086 bp

Ends


IR Length : 18/25

IRL : CTTGAATTTACAATATAAGTGCACAATAAAAACTCATAAGATTTTTCTAG
IRR : GGCGAATTGTCAAATTAAGTGCACATTTATCCCATAAAAAACTTCATAAG

Insertion site


Left flankDirect repeatRight flankDR Length
TATTTTTTGCAGCAAAAAAGCA2

DNA sequence

CTTGAATTTACAATATAAGTGCACAATAAAAACTCATAAGATTTTTCTAGTAAAATAGGATTGAACAAATATCTTACGAAAGGAAATCTTATGAGCTACC
ATCATTTTACCATAGATGAACGAGAAAGTATTCTGATTTATCGTACTAAAGGGATGACCTTTTCTCAAATAGCACGACTATTACATCGGCACCCCTCAAG
TATTAGCCGTGAATTAAAACGTCATTCCAAACAAGGCAACTATTCGCCTAGTAGGGCACAAACAGCTTATCATCTCGCTAAATCGCATTGTGGGCGAAAA
AGGAAATTAGAAATAGACGCTGAACTCAGTCAGACCGTCAAGCATCTTTTTCTTGAGTGTCAATGGTCGCCAGAAGAAATTGAGGGGCGATTACGTTTAG
AACGAGAAAGACACGTCATTAGTTATCAAACCATTTATAGAGCTATCTATCGCGGTCACTTTGACGACACGCCTCTTTCACATGGTGCTCGTGGGGTTGT
TCGCAAACTTCGTCACCATGGTAAAACACGCCATACAAAATCCCATGTGGAAAAGCGAGGAAAAATTCCTATTTCTCATACCATTCATGAGAGGCCAACA
GCAGCTAATGAACGCTCGAGAATAGGTGATTGGGAAGCCGATACTGTTGCTGGAAAGACTGGAAAAGCTTGCCTAGTAACACTCACTGATAGGCATTCCC
GCTTCCTCAAAATTCAGAAAGTAGCTGTCAAGAAAAGTAAATTGGTTATAGAAGCCATGGTAAATATGTTAGAGTCTCTACCAAAAGAAACAGTGACTCC
TGATAGAGGTAAGGAATTCTCAGGACATCCTGAACTCACCGAGAAACTAAATATCGAAGTCTATTTTCCTGATCCTCATGCTCCTTGGCAACGAGGAACA
AACGAGAATACAAATGGCTTATTGCGAGAGTATTTTCCAAAAGGAAGTGACTTAACAGAGGTAGAACACTTGATTATTCAGGAATGGGAAAATAAATTAA
ACAACAGACCACGAAAATGTCTAAACTGGAAAACACCTTATGAAGTTTTTTATGGGATAAATGTGCACTTAATTTGACAATTCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
987 bp328 aa911077+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYHHFTIDERESILIYRTKGMTFSQIARLLHRHPSSISRELKRHSKQGNYSPSRAQTAYHLAKSHCGRKRKLEIDAELSQTVKHLFLECQWSPEEIEGR
LRLERERHVISYQTIYRAIYRGHFDDTPLSHGARGVVRKLRHHGKTRHTKSHVEKRGKIPISHTIHERPTAANERSRIGDWEADTVAGKTGKACLVTLTD
RHSRFLKIQKVAVKKSKLVIEAMVNMLESLPKETVTPDRGKEFSGHPELTEKLNIEVYFPDPHAPWQRGTNENTNGLLREYFPKGSDLTEVEHLIIQEWE
NKLNNRPRKCLNWKTPYEVFYGINVHLI

 

Blast result :
Comments
ISSlu1 is 68% AA similar to ISApl1.
References