ISSlu1
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003025.1 | ND | Streptococcus lutetiensis | Streptococcus lutetiensis 033 |
DNA section
IS Length : 1086 bp
Ends
IR Length : 18/25
IRL : CTTGAATTTACAATATAAGTGCACAATAAAAACTCATAAGATTTTTCTAG
IRR : GGCGAATTGTCAAATTAAGTGCACATTTATCCCATAAAAAACTTCATAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTTTTTGC | AG | CAAAAAAGCA | 2 |
DNA sequence
CTTGAATTTACAATATAAGTGCACAATAAAAACTCATAAGATTTTTCTAGTAAAATAGGATTGAACAAATATCTTACGAAAGGAAATCTTATGAGCTACC
ATCATTTTACCATAGATGAACGAGAAAGTATTCTGATTTATCGTACTAAAGGGATGACCTTTTCTCAAATAGCACGACTATTACATCGGCACCCCTCAAG
TATTAGCCGTGAATTAAAACGTCATTCCAAACAAGGCAACTATTCGCCTAGTAGGGCACAAACAGCTTATCATCTCGCTAAATCGCATTGTGGGCGAAAA
AGGAAATTAGAAATAGACGCTGAACTCAGTCAGACCGTCAAGCATCTTTTTCTTGAGTGTCAATGGTCGCCAGAAGAAATTGAGGGGCGATTACGTTTAG
AACGAGAAAGACACGTCATTAGTTATCAAACCATTTATAGAGCTATCTATCGCGGTCACTTTGACGACACGCCTCTTTCACATGGTGCTCGTGGGGTTGT
TCGCAAACTTCGTCACCATGGTAAAACACGCCATACAAAATCCCATGTGGAAAAGCGAGGAAAAATTCCTATTTCTCATACCATTCATGAGAGGCCAACA
GCAGCTAATGAACGCTCGAGAATAGGTGATTGGGAAGCCGATACTGTTGCTGGAAAGACTGGAAAAGCTTGCCTAGTAACACTCACTGATAGGCATTCCC
GCTTCCTCAAAATTCAGAAAGTAGCTGTCAAGAAAAGTAAATTGGTTATAGAAGCCATGGTAAATATGTTAGAGTCTCTACCAAAAGAAACAGTGACTCC
TGATAGAGGTAAGGAATTCTCAGGACATCCTGAACTCACCGAGAAACTAAATATCGAAGTCTATTTTCCTGATCCTCATGCTCCTTGGCAACGAGGAACA
AACGAGAATACAAATGGCTTATTGCGAGAGTATTTTCCAAAAGGAAGTGACTTAACAGAGGTAGAACACTTGATTATTCAGGAATGGGAAAATAAATTAA
ACAACAGACCACGAAAATGTCTAAACTGGAAAACACCTTATGAAGTTTTTTATGGGATAAATGTGCACTTAATTTGACAATTCGCC
ATCATTTTACCATAGATGAACGAGAAAGTATTCTGATTTATCGTACTAAAGGGATGACCTTTTCTCAAATAGCACGACTATTACATCGGCACCCCTCAAG
TATTAGCCGTGAATTAAAACGTCATTCCAAACAAGGCAACTATTCGCCTAGTAGGGCACAAACAGCTTATCATCTCGCTAAATCGCATTGTGGGCGAAAA
AGGAAATTAGAAATAGACGCTGAACTCAGTCAGACCGTCAAGCATCTTTTTCTTGAGTGTCAATGGTCGCCAGAAGAAATTGAGGGGCGATTACGTTTAG
AACGAGAAAGACACGTCATTAGTTATCAAACCATTTATAGAGCTATCTATCGCGGTCACTTTGACGACACGCCTCTTTCACATGGTGCTCGTGGGGTTGT
TCGCAAACTTCGTCACCATGGTAAAACACGCCATACAAAATCCCATGTGGAAAAGCGAGGAAAAATTCCTATTTCTCATACCATTCATGAGAGGCCAACA
GCAGCTAATGAACGCTCGAGAATAGGTGATTGGGAAGCCGATACTGTTGCTGGAAAGACTGGAAAAGCTTGCCTAGTAACACTCACTGATAGGCATTCCC
GCTTCCTCAAAATTCAGAAAGTAGCTGTCAAGAAAAGTAAATTGGTTATAGAAGCCATGGTAAATATGTTAGAGTCTCTACCAAAAGAAACAGTGACTCC
TGATAGAGGTAAGGAATTCTCAGGACATCCTGAACTCACCGAGAAACTAAATATCGAAGTCTATTTTCCTGATCCTCATGCTCCTTGGCAACGAGGAACA
AACGAGAATACAAATGGCTTATTGCGAGAGTATTTTCCAAAAGGAAGTGACTTAACAGAGGTAGAACACTTGATTATTCAGGAATGGGAAAATAAATTAA
ACAACAGACCACGAAAATGTCTAAACTGGAAAACACCTTATGAAGTTTTTTATGGGATAAATGTGCACTTAATTTGACAATTCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 91 | 1077 | + | No |
Chemistry : DDE
ORF sequence :
MSYHHFTIDERESILIYRTKGMTFSQIARLLHRHPSSISRELKRHSKQGNYSPSRAQTAYHLAKSHCGRKRKLEIDAELSQTVKHLFLECQWSPEEIEGR
LRLERERHVISYQTIYRAIYRGHFDDTPLSHGARGVVRKLRHHGKTRHTKSHVEKRGKIPISHTIHERPTAANERSRIGDWEADTVAGKTGKACLVTLTD
RHSRFLKIQKVAVKKSKLVIEAMVNMLESLPKETVTPDRGKEFSGHPELTEKLNIEVYFPDPHAPWQRGTNENTNGLLREYFPKGSDLTEVEHLIIQEWE
NKLNNRPRKCLNWKTPYEVFYGINVHLI
LRLERERHVISYQTIYRAIYRGHFDDTPLSHGARGVVRKLRHHGKTRHTKSHVEKRGKIPISHTIHERPTAANERSRIGDWEADTVAGKTGKACLVTLTD
RHSRFLKIQKVAVKKSKLVIEAMVNMLESLPKETVTPDRGKEFSGHPELTEKLNIEVYFPDPHAPWQRGTNENTNGLLREYFPKGSDLTEVEHLIIQEWE
NKLNNRPRKCLNWKTPYEVFYGINVHLI
Blast result :
Comments
ISSlu1 is 68% AA similar to ISApl1.
References