ISPa75
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MF144194 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa 1160 plasmid p1160-VIM |
DNA section
IS Length : 2966 bp
Ends
IR Length : 23/33
IRL : GTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATCA
IRR : GTAACCGTCCGGGCACCCCACCTTTACGATCTCTTGGGTTGATGATTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAGGGAACCTA | TTTCGATG | CGCCGACAGTGG | 8 |
DNA sequence
GTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATCACCCTTATCGCCAGGATTTTCATGCGCCAACGAAGCTCTTATCCGAAACCA
TTCAAAGCTCAGGTCGTTCAGGAATGCCTGCAACCTGGCGCGACGGTGTCCAGTGTCGCCATCAGCCACGGCATCAATGCCAACGTCATCCGCAAATGGA
TGCCGCTCTATCGAGATCAGCCCGCAGCGACCTCACTGCCGGCCTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAATGTCAGTGATCATCGA
ATTGCCCATGGCCGGGCAAGTGATCACGGTGAAATGGCCAACCTCAGATCCCGAGGGATGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATTG
ATGCGATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCCGGTACCGAAACCGCATTAGCCCGGGTGATCGCGGTGTTTGGTGCGGCGAAGCCGCACTG
CGCTTATCTGTTCGCCAATCGTCGGGCTAACCGGATGAAAGTGCTAGTGCACGATGGCGTCGGCGTCTGGCTTGCAGCGCGTCGACTGAACCAAGGCAAG
TTCCACTGGCCCGGTATTCGCAATGGCTGCGAGGTCGAACTCGATAACGACCAACTTCAGGCGTTAGTTCTGGGCCTGCCGTGGCAGCGTGTTGGCGCCG
GCGGTGTGATTAGCATGCTGTAAACGCCGGCCATTTGGCCGGTCTACTTGTCGTCGCCCTGCGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCC
CAACCTCGACCAGATGACCCCGGAACAGCTTCGCGCCTTGGCGGCACAGGCGTTGCAGTTGCAGTCCCAGGTCGAGGCGATGAGCAGGAAGATCCAAAAC
GATCAAACCGTCATTGAGCAGCTCACTTACGAAATTGCCCTGCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCCGGCGCAAAGCAGCT
TGCTGGATGACCTGCTCGACACAGACCTTGAAGCTATTGAGGCCGAGCTAAAACAGCTCCTCCCAGCTGCGCCACAGGCCGAACCACGGCAATCCCCGAA
ACGTGCGCCCTTGCCGCCGCAGTTTCCACGCACGGTGATTCGTCACGAACCCGAAAACACCCAGTGCGCCTGTGGCTGCCAACTTCAACGCATCGGTGAA
GACGTCAGCGAGAAGCTGGATTACACGCCGGGCGTGTTTACCGTCGAGCAACATGTGCGTGGTAAATGGGCCTGCCGTCAGTGCGAAACCCTGATTCAGG
CGCCGGTGCCAGCCCAGGTTATCGACAAAGGTATCCCGACCGCAGGTTTGTTGGCCCACGTGATGGTGGCCAAGTTTGCCGACTACTTGCCGCTGTACCG
GCAGGAGAAAATTTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCGCAGTGGGTTGGACAAACCGGCGTGCGACTCCAGCCGCTGGTCGAT
GCGTTGCATGAAGCTATGCTGAAACAGGGCGTGATCCACGCCGACGAGACACCGGTACAGATGCTTGCGCCAGGCGAGAAGAAAACCCACCGGGCCTATG
TCTGGGCCTACAGCACGACGCCGTTTTCGGCGCTCAAAGCGGTTGTTTACGACTTCAGCCCAAGCCGTGCTGGCGAACATGCACGCAACTTCCTGGGCGA
CTGGAACGGCAAGCTGGTCTGCGACGACTTCGCTGGCTACAAAGCCGGGTTTGAGCAAGGCATCACTGAAATCGGCTGCATGGCCCACGCCCGTCGCAAG
TTCTTTGATCTGCACGTGGCGAATAAAAGCCAGCTGGCTGAACAGGCCCTGCACTCGATCAGCGGCTTGTACGAGGTCGAACGCCAAGCGTGGGACATGA
GCGATGAAGACCGCTGGCGAATACGCCAGGAAATGGCGGTGCCGATCATCAAAACACTGCATGACTGGATGTTGGCCCAGCGAGACCTGGTGCCCAATGG
ATCAGCCACGGCCAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGTCGCGCTACCTCGATGACGGGGCCGTACCCATAGACAACAACTGGGCA
GAGAACCAGATCCGGCCTTGGGCTCTTGGACGCAAGAACTGGCTCTTCGCAGGATCGCTACGCAGTGGAAAACGGGCGGCGGCGATCATGAGTTTGATCC
AGTCAGCACGGCTGAATGGGCATGATCCGTATGTTTACTTGAAGGACGTTCTCACGCGCCTGCCGACGCAGCGGGCTAGTGAAATTACAGAGCTACTGCC
GCACAAATGGATGCTAGCTTGAGCCGATATGAGGGCTGCAGACGTTGAACAGTGCACTTGAATCCTGAAAAACATGTCGGATATTCAGCAGCGTTTGCGA
GGGACAGTCAGTCGAAAAACTCCATCTCGCTATAAGGGTGACTTCGGCATGTAGCCAATCGTGATTTCAAATCACCAACATGAGCTTCCAGTTGATGGCC
ATCTGGGTCAAGGAAGTAGAGAGAGTCACCTTCACTCTTGTCTTGCCTCCAAAGCGGAACATTCAGTTCACGCAGACGTTGGGAGAATTCGGCGAAGTTT
TTCTGATCAATAGAAAAGGCATAGTGCGTGTAATTACGTTGCATGTCTTCTGCGCGCACACTATCACTAGAGAGACAGAGCCAGAGATCACCCAGGCTAA
GATACGCCCCAGTCTTCCAGCGCGCAGACAATTTGAAGCCCAGCGTTTCCTCATAAAAGGCAATGCTGCGGGGCAAGCTGCATACGGCGAGAGTGAGATG
ATTGAAGCCAGTCAGCATGAAGATCGCCTGAGACAGATGGACGGCTAGAATGTAGATCAGACAGGATGAAATGTCATCTTTAGCTGCAATGAAGCTCAGC
CCCTAGTGCTACACACCAGAATCATCAACCCAAGAGATCGTAAAGGTGGGGTGCCCGGACGGTTAC
TTCAAAGCTCAGGTCGTTCAGGAATGCCTGCAACCTGGCGCGACGGTGTCCAGTGTCGCCATCAGCCACGGCATCAATGCCAACGTCATCCGCAAATGGA
TGCCGCTCTATCGAGATCAGCCCGCAGCGACCTCACTGCCGGCCTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAATGTCAGTGATCATCGA
ATTGCCCATGGCCGGGCAAGTGATCACGGTGAAATGGCCAACCTCAGATCCCGAGGGATGCGCGCAATTTATCCGGGCTGTCGCTCAATGATCCGCATTG
ATGCGATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCCGGTACCGAAACCGCATTAGCCCGGGTGATCGCGGTGTTTGGTGCGGCGAAGCCGCACTG
CGCTTATCTGTTCGCCAATCGTCGGGCTAACCGGATGAAAGTGCTAGTGCACGATGGCGTCGGCGTCTGGCTTGCAGCGCGTCGACTGAACCAAGGCAAG
TTCCACTGGCCCGGTATTCGCAATGGCTGCGAGGTCGAACTCGATAACGACCAACTTCAGGCGTTAGTTCTGGGCCTGCCGTGGCAGCGTGTTGGCGCCG
GCGGTGTGATTAGCATGCTGTAAACGCCGGCCATTTGGCCGGTCTACTTGTCGTCGCCCTGCGCCTGCTCTGGCACAATCGGCGGCATGACTTTCTCGCC
CAACCTCGACCAGATGACCCCGGAACAGCTTCGCGCCTTGGCGGCACAGGCGTTGCAGTTGCAGTCCCAGGTCGAGGCGATGAGCAGGAAGATCCAAAAC
GATCAAACCGTCATTGAGCAGCTCACTTACGAAATTGCCCTGCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGCCCGGCGCAAAGCAGCT
TGCTGGATGACCTGCTCGACACAGACCTTGAAGCTATTGAGGCCGAGCTAAAACAGCTCCTCCCAGCTGCGCCACAGGCCGAACCACGGCAATCCCCGAA
ACGTGCGCCCTTGCCGCCGCAGTTTCCACGCACGGTGATTCGTCACGAACCCGAAAACACCCAGTGCGCCTGTGGCTGCCAACTTCAACGCATCGGTGAA
GACGTCAGCGAGAAGCTGGATTACACGCCGGGCGTGTTTACCGTCGAGCAACATGTGCGTGGTAAATGGGCCTGCCGTCAGTGCGAAACCCTGATTCAGG
CGCCGGTGCCAGCCCAGGTTATCGACAAAGGTATCCCGACCGCAGGTTTGTTGGCCCACGTGATGGTGGCCAAGTTTGCCGACTACTTGCCGCTGTACCG
GCAGGAGAAAATTTTTGGCCGCGCCGGGCTGGCGATTGCTCGCTCGACCTTGGCGCAGTGGGTTGGACAAACCGGCGTGCGACTCCAGCCGCTGGTCGAT
GCGTTGCATGAAGCTATGCTGAAACAGGGCGTGATCCACGCCGACGAGACACCGGTACAGATGCTTGCGCCAGGCGAGAAGAAAACCCACCGGGCCTATG
TCTGGGCCTACAGCACGACGCCGTTTTCGGCGCTCAAAGCGGTTGTTTACGACTTCAGCCCAAGCCGTGCTGGCGAACATGCACGCAACTTCCTGGGCGA
CTGGAACGGCAAGCTGGTCTGCGACGACTTCGCTGGCTACAAAGCCGGGTTTGAGCAAGGCATCACTGAAATCGGCTGCATGGCCCACGCCCGTCGCAAG
TTCTTTGATCTGCACGTGGCGAATAAAAGCCAGCTGGCTGAACAGGCCCTGCACTCGATCAGCGGCTTGTACGAGGTCGAACGCCAAGCGTGGGACATGA
GCGATGAAGACCGCTGGCGAATACGCCAGGAAATGGCGGTGCCGATCATCAAAACACTGCATGACTGGATGTTGGCCCAGCGAGACCTGGTGCCCAATGG
ATCAGCCACGGCCAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGTCGCGCTACCTCGATGACGGGGCCGTACCCATAGACAACAACTGGGCA
GAGAACCAGATCCGGCCTTGGGCTCTTGGACGCAAGAACTGGCTCTTCGCAGGATCGCTACGCAGTGGAAAACGGGCGGCGGCGATCATGAGTTTGATCC
AGTCAGCACGGCTGAATGGGCATGATCCGTATGTTTACTTGAAGGACGTTCTCACGCGCCTGCCGACGCAGCGGGCTAGTGAAATTACAGAGCTACTGCC
GCACAAATGGATGCTAGCTTGAGCCGATATGAGGGCTGCAGACGTTGAACAGTGCACTTGAATCCTGAAAAACATGTCGGATATTCAGCAGCGTTTGCGA
GGGACAGTCAGTCGAAAAACTCCATCTCGCTATAAGGGTGACTTCGGCATGTAGCCAATCGTGATTTCAAATCACCAACATGAGCTTCCAGTTGATGGCC
ATCTGGGTCAAGGAAGTAGAGAGAGTCACCTTCACTCTTGTCTTGCCTCCAAAGCGGAACATTCAGTTCACGCAGACGTTGGGAGAATTCGGCGAAGTTT
TTCTGATCAATAGAAAAGGCATAGTGCGTGTAATTACGTTGCATGTCTTCTGCGCGCACACTATCACTAGAGAGACAGAGCCAGAGATCACCCAGGCTAA
GATACGCCCCAGTCTTCCAGCGCGCAGACAATTTGAAGCCCAGCGTTTCCTCATAAAAGGCAATGCTGCGGGGCAAGCTGCATACGGCGAGAGTGAGATG
ATTGAAGCCAGTCAGCATGAAGATCGCCTGAGACAGATGGACGGCTAGAATGTAGATCAGACAGGATGAAATGTCATCTTTAGCTGCAATGAAGCTCAGC
CCCTAGTGCTACACACCAGAATCATCAACCCAAGAGATCGTAAAGGTGGGGTGCCCGGACGGTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
321 bp | 106 aa | 71 | 391 | + | No |
AG : IS66 TnpA
ORF sequence :
MRQRSSYPKPFKAQVVQECLQPGATVSSVAISHGINANVIRKWMPLYRDQPAATSLPAFVPLKAAPKRPVEMSVIIELPMAGQVITVKWPTSDPEGCAQF
IRAVAQ
IRAVAQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
390 bp | 129 aa | 334 | 723 | + | No |
AG : IS66 TnpB
ORF sequence :
MANLRSRGMRAIYPGCRSMIRIDAIWLATEPMDMRAGTETALARVIAVFGAAKPHCAYLFANRRANRMKVLVHDGVGVWLAARRLNQGKFHWPGIRNGCE
VELDNDQLQALVLGLPWQRVGAGGVISML
VELDNDQLQALVLGLPWQRVGAGGVISML
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1536 bp | 511 aa | 787 | 2322 | + | No |
Chemistry : DDE
ORF sequence :
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSRKIQNDQTVIEQLTYEIALLKRHKFAKRSEQISPAQSSLLDDLLDTDLEAIEAELKQLLPAAPQAEP
RQSPKRAPLPPQFPRTVIRHEPENTQCACGCQLQRIGEDVSEKLDYTPGVFTVEQHVRGKWACRQCETLIQAPVPAQVIDKGIPTAGLLAHVMVAKFADY
LPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDALHEAMLKQGVIHADETPVQMLAPGEKKTHRAYVWAYSTTPFSALKAVVYDFSPSRAGEHAR
NFLGDWNGKLVCDDFAGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSISGLYEVERQAWDMSDEDRWRIRQEMAVPIIKTLHDWMLAQRD
LVPNGSATAKALDYSLKRWVALSRYLDDGAVPIDNNWAENQIRPWALGRKNWLFAGSLRSGKRAAAIMSLIQSARLNGHDPYVYLKDVLTRLPTQRASEI
TELLPHKWMLA
RQSPKRAPLPPQFPRTVIRHEPENTQCACGCQLQRIGEDVSEKLDYTPGVFTVEQHVRGKWACRQCETLIQAPVPAQVIDKGIPTAGLLAHVMVAKFADY
LPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDALHEAMLKQGVIHADETPVQMLAPGEKKTHRAYVWAYSTTPFSALKAVVYDFSPSRAGEHAR
NFLGDWNGKLVCDDFAGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSISGLYEVERQAWDMSDEDRWRIRQEMAVPIIKTLHDWMLAQRD
LVPNGSATAKALDYSLKRWVALSRYLDDGAVPIDNNWAENQIRPWALGRKNWLFAGSLRSGKRAAAIMSLIQSARLNGHDPYVYLKDVLTRLPTQRASEI
TELLPHKWMLA
Blast result :
Comments
ISPa75 is 97% aa similar to ISPpu14.
There is an insertion of a copy of ISPa79 between the left end and the first ORF, in silico we have deleted it.
There is an insertion of a copy of ISPa79 between the left end and the first ORF, in silico we have deleted it.
References
1] Lijun Zeng (2018) Direct submission.