ISPa83

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MF144194 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa 1160 p1160-VIM
Pseudomonas fluorescens PC24 pPHE24
DNA section
IS Length : 1128 bp

Ends


Left end : AATAGCGATGGCTCACCTTGGGTTATTCCAGAGCTATGGCACGCTGCCGACATGAAGCACACCAAGACCCTCCAGGTTCGCGTTCGAGACAAACACACTC II struct. : Yes
Right end : TCACGACCGCGACGTGAACGCGGCCAGGAACATTCTCGCGCTCGGGCATGAGCGTCCTGGAGAGGGAATCCCCGGCGTTTAAGCCGGGGGAGGATGTCAA II struct. : Yes
Comments : There is a secondary structure on LE end but the clivage site is not clear.

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCCTAGATCGGGGCGGCCTCCTTGGTTGTTGAAAAATTCAA

DNA sequence

AATAGCGATGGCTCACCTTGGGTTATTCCAGAGCTATGGCACGCTGCCGACATGAAGCACACCAAGACCCTCCAGGTTCGCGTTCGAGACAAACACACTC
AGCTGCTGCGCCAGATGGCCCGGCAGGTGAATTTCGTCTGGAACTACCTGAACGAACTCAGCCATCGCTCGATCCGTGAGCGCGGGGTCTTTCTGTCGGC
CTACGACTTAGATCGCTATACCCAGGGCGCAAGCAAGGAACTGGGCCTGCACTCGCAGACATTGCAGGAAGTGTCGCGGGAATACGCCACGCGCCGCCGG
CAGTTCAAGAAGGCCCGGCTGAGCTGGCGTAAATCGATCGGTGTTCGCCGCTCGCTCGGCTGGATTCCGTTCAAATCCGGCGCAGCGAGCTGGAAGAACG
GCCAGGTGTTCCACAATGGCAGATGCTTCAAGGTCTGGGACAGCTACGGGCTGGGCCAGTACCGCCTCCGCTCCGGCAGCTTCAGCGAAGACGCCCGAGG
CCGCTGGTATTTCAATGTGGTCGTCGAGCTGGAGACCCAGCTATCGACGGGGCAAGGGGTAGTAGGCATCGACCTGGGCCTGAAGGACGTGGCCACCTGT
AGCGACGGGCAGCGGCTGGAGAATGGCCGTTTCTACCGCGACCTGGAGCCCAAGCTGGCCAGCGCCCAGCGTGCTGGCAAGAAAGCTCGGGTGCGGGCAA
TCCACGCCAAGATAGCCAACCGGCGCAAGGATGCCTTACACAAATTCAGCCGCTCGCTGGTCGAGCGCTGCAACACGATCATCGTGGGCGATGTCAGCTC
GCAGAAACTCGTCAAAACCAAGATGGCCAAGTCGGTGCTCGATGCCGGCTGGGGTCAACTGAAAACAATGCTGGCCTACAAATGCGCGCACGCAGGCATC
GTCTTCAGGGTCGTGAACGAGGCGTACACCACCCAAACCTGTAGCTGTTGCGGTGCATTGCCCGCCAGCAGGCCGAGAGGTATCGCAGGGCTTGGAATAA
GGGAATGGATCTGTGAGTGCGGTGTCACTCACGACCGCGACGTGAACGCGGCCAGGAACATTCTCGCGCTCGGGCATGAGCGTCCTGGAGAGGGAATCCC
CGGCGTTTAAGCCGGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp352 aa521110+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKHTKTLQVRVRDKHTQLLRQMARQVNFVWNYLNELSHRSIRERGVFLSAYDLDRYTQGASKELGLHSQTLQEVSREYATRRRQFKKARLSWRKSIGVRR
SLGWIPFKSGAASWKNGQVFHNGRCFKVWDSYGLGQYRLRSGSFSEDARGRWYFNVVVELETQLSTGQGVVGIDLGLKDVATCSDGQRLENGRFYRDLEP
KLASAQRAGKKARVRAIHAKIANRRKDALHKFSRSLVERCNTIIVGDVSSQKLVKTKMAKSVLDAGWGQLKTMLAYKCAHAGIVFRVVNEAYTTQTCSCC
GALPASRPRGIAGLGIREWICECGVTHDRDVNAARNILALGHERPGEGIPGV

 

Blast result :
Comments
ISPa83 is 55% aa similar to ISBth17.
References
1] Dongsheng Zhou (2018) Direct submission.
2] Zeng,L., Zhan,Z., Liang,L., Feng,J., Zhao,Y., Luo,W., Jiang,X. and Zhou,D. (2017) Direct GenBank submission.