ISSsu10

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002640 ND Streptococcus suis
Streptococcus suis SS12
DNA section
IS Length : 1523 bp

Ends


Left end : GGGAGCGGGAAAGACATCCATGATGGCTCCGCCCTCACCCACAGAATAATGAAAACGAACATAAAGCCCTCACTAGGTGTATAATCTTAGTGAGGGCTTT
Right end : AATATAAAAATTGTTTCACTTTGATTCTATCATAGGGAGGGAGTTTCTGCATTCTTTTGAGTTTTCGTATAAGAACTCGACTGGTCAAAAAGAGTTCGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TTATTAAAAAAACAAGTCTT0

DNA sequence

GGGAGCGGGAAAGACATCCATGATGGCTCCGCCCTCACCCACAGAATAATGAAAACGAACATAAAGCCCTCACTAGGTGTATAATCTTAGTGAGGGCTTT
GTGGTTAACGAGTTAATGATGTTAGTCATCGCGGGAAAAACTAACTCACTCTACTGACGAGCACCCCAAAATATGCGACAGGCATGAGTATAAAAATACG
ACTAAAATTCGGTAGATAAGCTCTCTAATTTTTAGAAGGAGGGAATTATCATGGATGTTCTCTATCAATCTTGTGCAGGTATTGATGTCCATCAAGCCAA
TATTGTTGTCTGTATCCTACATGGACCACTCACCTCAACTCGTCCAAAGCGTGAGATGGCTACATTTGATACAACGACTAAAGGCCTACGTGCTTGCCAC
GATTTTCTCAGTCAATTTCATGTGGAAGCTGTTGGTATGGAAAGCACCGGTGTCTATTGGCGACCTGTCTGGCATGCTCTCTGTGATGACTTCGAGCTGA
TACTCGCTCAACCAGCCCACATGAAGGCTATTCCAGGTCAGAAAACCGACAAGAAGGACGCTCACTGGATTGCCAAATTAACACGGATTGGTCTGCTTCC
TCGGAGTTTCGTTCCCGATGAAACCATTCAAGAATTGAGGGAGTTGACCAGACAACGAAAACATTATGTGGAAAGTCGCAATCGAGAAACAAACCGTATC
CATAAATTTCTTCAGTCAGGTGGTATCAAGCTAACAACCTATATTGAAGATATTATGGGGCTATCTGGTCGCAATCTCCTTCAGCTACTGGTTGATGGGA
CGCCTATTACACCTCGCATTGTTCATCAATCCGTTTATACCAGCTTGAAGAAGAAAGTGCCGCAGCTTCTGGAAGCCTTGGACGGTTATTTCTCTGACCA
TCATCGCTTTATGTTAAAGCAGTCCTTAGAGATTTATGATTTTTATCAGAAGCAGATTGAGTTGTTGGAAGAGCGAATTACTGTCTATCTATCACAATAT
GAAAACCATGTAGAAACATTGGATTCCATCCCAGGCATTGATGTCATTACAGCTTCTGTTATCATTTCTGAGGTTGGAGTTGACATGAGTCAGTTTCCGA
CATCTGGACATTTAGCTTCTTGGGCTGGACTCTGTCCAGGTAATAATGAGAGTGCTGGTAAAAAACGAAGTACCAAGATTCGACACGGAAATTCATATTT
GAAGAAAATGTTAATGTCAAGCCGCTTTTCGCCGCTAGGACCCAGAAAGGAAGTACCCCTAGCAGACCGATTTTATCAGATTCAAAGTCGGCGTGGCTCA
CAAAAAGCAACCATTGCACTTGCGCATCAACTATTAAAAATAGCCTATATCCTTTTAAAAGAACAGATGACTTATCCTGAATTTTTAGCACAAAAAAGAC
TACTAGGGACGAGCTAGTAGCCTAATATAAAAATTGTTTCACTTTGATTCTATCATAGGGAGGGAGTTTCTGCATTCTTTTGAGTTTTCGTATAAGAACT
CGACTGGTCAAAAAGAGTTCGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa2511417+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDVLYQSCAGIDVHQANIVVCILHGPLTSTRPKREMATFDTTTKGLRACHDFLSQFHVEAVGMESTGVYWRPVWHALCDDFELILAQPAHMKAIPGQKTD
KKDAHWIAKLTRIGLLPRSFVPDETIQELRELTRQRKHYVESRNRETNRIHKFLQSGGIKLTTYIEDIMGLSGRNLLQLLVDGTPITPRIVHQSVYTSLK
KKVPQLLEALDGYFSDHHRFMLKQSLEIYDFYQKQIELLEERITVYLSQYENHVETLDSIPGIDVITASVIISEVGVDMSQFPTSGHLASWAGLCPGNNE
SAGKKRSTKIRHGNSYLKKMLMSSRFSPLGPRKEVPLADRFYQIQSRRGSQKATIALAHQLLKIAYILLKEQMTYPEFLAQKRLLGTS

 

Blast result :
Comments
ISSsu10 is 61% aa similar to ISAzo28.
References