ISSsu10
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002640 | ND | Streptococcus suis | Streptococcus suis SS12 |
DNA section
IS Length : 1523 bp
Ends
Left end : GGGAGCGGGAAAGACATCCATGATGGCTCCGCCCTCACCCACAGAATAATGAAAACGAACATAAAGCCCTCACTAGGTGTATAATCTTAGTGAGGGCTTT
Right end : AATATAAAAATTGTTTCACTTTGATTCTATCATAGGGAGGGAGTTTCTGCATTCTTTTGAGTTTTCGTATAAGAACTCGACTGGTCAAAAAGAGTTCGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATTAAAAA | AACAAGTCTT | 0 |
DNA sequence
GGGAGCGGGAAAGACATCCATGATGGCTCCGCCCTCACCCACAGAATAATGAAAACGAACATAAAGCCCTCACTAGGTGTATAATCTTAGTGAGGGCTTT
GTGGTTAACGAGTTAATGATGTTAGTCATCGCGGGAAAAACTAACTCACTCTACTGACGAGCACCCCAAAATATGCGACAGGCATGAGTATAAAAATACG
ACTAAAATTCGGTAGATAAGCTCTCTAATTTTTAGAAGGAGGGAATTATCATGGATGTTCTCTATCAATCTTGTGCAGGTATTGATGTCCATCAAGCCAA
TATTGTTGTCTGTATCCTACATGGACCACTCACCTCAACTCGTCCAAAGCGTGAGATGGCTACATTTGATACAACGACTAAAGGCCTACGTGCTTGCCAC
GATTTTCTCAGTCAATTTCATGTGGAAGCTGTTGGTATGGAAAGCACCGGTGTCTATTGGCGACCTGTCTGGCATGCTCTCTGTGATGACTTCGAGCTGA
TACTCGCTCAACCAGCCCACATGAAGGCTATTCCAGGTCAGAAAACCGACAAGAAGGACGCTCACTGGATTGCCAAATTAACACGGATTGGTCTGCTTCC
TCGGAGTTTCGTTCCCGATGAAACCATTCAAGAATTGAGGGAGTTGACCAGACAACGAAAACATTATGTGGAAAGTCGCAATCGAGAAACAAACCGTATC
CATAAATTTCTTCAGTCAGGTGGTATCAAGCTAACAACCTATATTGAAGATATTATGGGGCTATCTGGTCGCAATCTCCTTCAGCTACTGGTTGATGGGA
CGCCTATTACACCTCGCATTGTTCATCAATCCGTTTATACCAGCTTGAAGAAGAAAGTGCCGCAGCTTCTGGAAGCCTTGGACGGTTATTTCTCTGACCA
TCATCGCTTTATGTTAAAGCAGTCCTTAGAGATTTATGATTTTTATCAGAAGCAGATTGAGTTGTTGGAAGAGCGAATTACTGTCTATCTATCACAATAT
GAAAACCATGTAGAAACATTGGATTCCATCCCAGGCATTGATGTCATTACAGCTTCTGTTATCATTTCTGAGGTTGGAGTTGACATGAGTCAGTTTCCGA
CATCTGGACATTTAGCTTCTTGGGCTGGACTCTGTCCAGGTAATAATGAGAGTGCTGGTAAAAAACGAAGTACCAAGATTCGACACGGAAATTCATATTT
GAAGAAAATGTTAATGTCAAGCCGCTTTTCGCCGCTAGGACCCAGAAAGGAAGTACCCCTAGCAGACCGATTTTATCAGATTCAAAGTCGGCGTGGCTCA
CAAAAAGCAACCATTGCACTTGCGCATCAACTATTAAAAATAGCCTATATCCTTTTAAAAGAACAGATGACTTATCCTGAATTTTTAGCACAAAAAAGAC
TACTAGGGACGAGCTAGTAGCCTAATATAAAAATTGTTTCACTTTGATTCTATCATAGGGAGGGAGTTTCTGCATTCTTTTGAGTTTTCGTATAAGAACT
CGACTGGTCAAAAAGAGTTCGTC
GTGGTTAACGAGTTAATGATGTTAGTCATCGCGGGAAAAACTAACTCACTCTACTGACGAGCACCCCAAAATATGCGACAGGCATGAGTATAAAAATACG
ACTAAAATTCGGTAGATAAGCTCTCTAATTTTTAGAAGGAGGGAATTATCATGGATGTTCTCTATCAATCTTGTGCAGGTATTGATGTCCATCAAGCCAA
TATTGTTGTCTGTATCCTACATGGACCACTCACCTCAACTCGTCCAAAGCGTGAGATGGCTACATTTGATACAACGACTAAAGGCCTACGTGCTTGCCAC
GATTTTCTCAGTCAATTTCATGTGGAAGCTGTTGGTATGGAAAGCACCGGTGTCTATTGGCGACCTGTCTGGCATGCTCTCTGTGATGACTTCGAGCTGA
TACTCGCTCAACCAGCCCACATGAAGGCTATTCCAGGTCAGAAAACCGACAAGAAGGACGCTCACTGGATTGCCAAATTAACACGGATTGGTCTGCTTCC
TCGGAGTTTCGTTCCCGATGAAACCATTCAAGAATTGAGGGAGTTGACCAGACAACGAAAACATTATGTGGAAAGTCGCAATCGAGAAACAAACCGTATC
CATAAATTTCTTCAGTCAGGTGGTATCAAGCTAACAACCTATATTGAAGATATTATGGGGCTATCTGGTCGCAATCTCCTTCAGCTACTGGTTGATGGGA
CGCCTATTACACCTCGCATTGTTCATCAATCCGTTTATACCAGCTTGAAGAAGAAAGTGCCGCAGCTTCTGGAAGCCTTGGACGGTTATTTCTCTGACCA
TCATCGCTTTATGTTAAAGCAGTCCTTAGAGATTTATGATTTTTATCAGAAGCAGATTGAGTTGTTGGAAGAGCGAATTACTGTCTATCTATCACAATAT
GAAAACCATGTAGAAACATTGGATTCCATCCCAGGCATTGATGTCATTACAGCTTCTGTTATCATTTCTGAGGTTGGAGTTGACATGAGTCAGTTTCCGA
CATCTGGACATTTAGCTTCTTGGGCTGGACTCTGTCCAGGTAATAATGAGAGTGCTGGTAAAAAACGAAGTACCAAGATTCGACACGGAAATTCATATTT
GAAGAAAATGTTAATGTCAAGCCGCTTTTCGCCGCTAGGACCCAGAAAGGAAGTACCCCTAGCAGACCGATTTTATCAGATTCAAAGTCGGCGTGGCTCA
CAAAAAGCAACCATTGCACTTGCGCATCAACTATTAAAAATAGCCTATATCCTTTTAAAAGAACAGATGACTTATCCTGAATTTTTAGCACAAAAAAGAC
TACTAGGGACGAGCTAGTAGCCTAATATAAAAATTGTTTCACTTTGATTCTATCATAGGGAGGGAGTTTCTGCATTCTTTTGAGTTTTCGTATAAGAACT
CGACTGGTCAAAAAGAGTTCGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 251 | 1417 | + | No |
Chemistry : DEDD
ORF sequence :
MDVLYQSCAGIDVHQANIVVCILHGPLTSTRPKREMATFDTTTKGLRACHDFLSQFHVEAVGMESTGVYWRPVWHALCDDFELILAQPAHMKAIPGQKTD
KKDAHWIAKLTRIGLLPRSFVPDETIQELRELTRQRKHYVESRNRETNRIHKFLQSGGIKLTTYIEDIMGLSGRNLLQLLVDGTPITPRIVHQSVYTSLK
KKVPQLLEALDGYFSDHHRFMLKQSLEIYDFYQKQIELLEERITVYLSQYENHVETLDSIPGIDVITASVIISEVGVDMSQFPTSGHLASWAGLCPGNNE
SAGKKRSTKIRHGNSYLKKMLMSSRFSPLGPRKEVPLADRFYQIQSRRGSQKATIALAHQLLKIAYILLKEQMTYPEFLAQKRLLGTS
KKDAHWIAKLTRIGLLPRSFVPDETIQELRELTRQRKHYVESRNRETNRIHKFLQSGGIKLTTYIEDIMGLSGRNLLQLLVDGTPITPRIVHQSVYTSLK
KKVPQLLEALDGYFSDHHRFMLKQSLEIYDFYQKQIELLEERITVYLSQYENHVETLDSIPGIDVITASVIISEVGVDMSQFPTSGHLASWAGLCPGNNE
SAGKKRSTKIRHGNSYLKKMLMSSRFSPLGPRKEVPLADRFYQIQSRRGSQKATIALAHQLLKIAYILLKEQMTYPEFLAQKRLLGTS
Blast result :
Comments
ISSsu10 is 61% aa similar to ISAzo28.
References