ISBli31

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014869 ND Brevibacterium linens
Brevibacterium linens
Brevibacterium linens BS258
Brevibacterium epidermidis BS258
DNA section
IS Length : 1407 bp

Ends


Left end : TGTGAGTATTGACAGTGGCTGGTCTGGGACTGGCTGGCAGAGTAGGTGTTGGCCTCTCCGTCCAGTGATCGTGACTCCACCTCGCGCTGACCCACACCGT
Right end : CAAGCGCAACCTCAAACGGTATCTAGCGCGCCGGGTCTACAAGATCCTCAACGCGCTAGATACCGTTCCTCAACCCGCTTGACAAGACATAGAAGGATCG

Insertion site


Left flankDirect repeatRight flankDR Length
TACCTCGCGCAGGTTGCTGG0

DNA sequence

TGTGAGTATTGACAGTGGCTGGTCTGGGACTGGCTGGCAGAGTAGGTGTTGGCCTCTCCGTCCAGTGATCGTGACTCCACCTCGCGCTGACCCACACCGT
GGTGTCTTGCCCTCGATTTGTCCGATCACATGGATGGTGCGGCCGGCACCAGCTCGGCCCACATCGGTAACTTGATCAGAAGGCTGTCCACCCCCGAAAA
TCCGGGGGTGTGACTCATCACAGTGTTGTTCCGAAGTGATCTCTAACCCGGACCGGTACCGGCCGCAAGCGGCCACGCAACCCATCGGTCAAACAGGGAG
CTTCGAACCGCTATGTCTATTGTCGCGCACTTATACAGTTTCTTCATCGGTGTTGATACACACGCCAGAAACCACGTGTATTCCATCGTCACCAACACCG
GAATTCTTGTCGAAACCCGTTCCTTCCCCACCACGTCAGCAGGAATCAAACGAGCCCTCACCTGGGCCGGCAGGCGCACCAGCGGTGACCTCGACACCCT
CTGGGTCGTTGAAGGTGCGGCCTCGTACGGTGCGGTGCTGACCGGACACATCGCCGCAGCCGGGTACCCGGTAGTCGAAGCCGGGCGTATGGATGCCAAA
GCCCGCCACGGTGTCGGTAAGAGCGACGAGCTTGATTCCCGCCGGATCGCGGCATCTGTATTGCCTCTCGACGCCGATCAACTGCGGTGGCCGCGTCACG
GTGAAGGCGTCCGGCAGGCGCTGCGTGTCCTGCTGGCAGCCCGGGACGCGATGAGTACGGAACGGACTCGTGCGATCAACTCTCTGACCGCGCTGGTGCG
CACCATCGATCTTGGCATCGATGCCCGCAAGTCGTTGACCAGTGACCAGGTCGACGAGATCGCGAAATGGCGGACCCGCAACGAAGACGTCGACTTGTCC
ACCGCCCGGGAAGAAGCGATCCGTCTGGCCAAACGCGTCCTCGCTTTGAACGATGATCTGCAGACCAACCATGACAGGCTCACCGAGCTTGTTGAAGCTA
GTCCGGCCGCACCCTTGCTGGATGAGCCCGGGATCGGCCCATTCAGCGCCGCTGTGTGCTTCACCGCGTGGTCCCACCCGGGGCGGGTGCGGAACGAGGC
CGCGTTCGCAGCTCTGGCGGGAGTGAACCCGATACCTGCGTCGTCGGGCAACACGCGCCGGCACCGGTTGAACCGGGGCGGGGATCGGCAGTTGAACCGG
GCCCTACACACGGTGATCATGAACCGGATGGTCCATGACGAACGGACCAGGAACTACGTGGCCCGCCACTACGGTGAAGAACCGACGAAGAAATCCAAGA
GGGAGATCAAGCGCAACCTCAAACGGTATCTAGCGCGCCGGGTCTACAAGATCCTCAACGCGCTAGATACCGTTCCTCAACCCGCTTGACAAGACATAGA
AGGATCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1077 bp358 aa3131389+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSIVAHLYSFFIGVDTHARNHVYSIVTNTGILVETRSFPTTSAGIKRALTWAGRRTSGDLDTLWVVEGAASYGAVLTGHIAAAGYPVVEAGRMDAKARHG
VGKSDELDSRRIAASVLPLDADQLRWPRHGEGVRQALRVLLAARDAMSTERTRAINSLTALVRTIDLGIDARKSLTSDQVDEIAKWRTRNEDVDLSTARE
EAIRLAKRVLALNDDLQTNHDRLTELVEASPAAPLLDEPGIGPFSAAVCFTAWSHPGRVRNEAAFAALAGVNPIPASSGNTRRHRLNRGGDRQLNRALHT
VIMNRMVHDERTRNYVARHYGEEPTKKSKREIKRNLKRYLARRVYKILNALDTVPQPA

 

Blast result :
Comments
ISBli31 is 76% aa similar to ISAar29.
There is an empty site in Brevibacterium siliguriense strain DSM 23676 (LT629766).
Inserted in a higthly repeted sequence.
References
1] Sebastien Levesque (2017) Direct submission.
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.