ISBli31
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP014869 | ND | Brevibacterium linens | Brevibacterium linens Brevibacterium linens BS258 Brevibacterium epidermidis BS258 |
DNA section
IS Length : 1407 bp
Ends
Left end : TGTGAGTATTGACAGTGGCTGGTCTGGGACTGGCTGGCAGAGTAGGTGTTGGCCTCTCCGTCCAGTGATCGTGACTCCACCTCGCGCTGACCCACACCGT
Right end : CAAGCGCAACCTCAAACGGTATCTAGCGCGCCGGGTCTACAAGATCCTCAACGCGCTAGATACCGTTCCTCAACCCGCTTGACAAGACATAGAAGGATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACCTCGCGC | AGGTTGCTGG | 0 |
DNA sequence
TGTGAGTATTGACAGTGGCTGGTCTGGGACTGGCTGGCAGAGTAGGTGTTGGCCTCTCCGTCCAGTGATCGTGACTCCACCTCGCGCTGACCCACACCGT
GGTGTCTTGCCCTCGATTTGTCCGATCACATGGATGGTGCGGCCGGCACCAGCTCGGCCCACATCGGTAACTTGATCAGAAGGCTGTCCACCCCCGAAAA
TCCGGGGGTGTGACTCATCACAGTGTTGTTCCGAAGTGATCTCTAACCCGGACCGGTACCGGCCGCAAGCGGCCACGCAACCCATCGGTCAAACAGGGAG
CTTCGAACCGCTATGTCTATTGTCGCGCACTTATACAGTTTCTTCATCGGTGTTGATACACACGCCAGAAACCACGTGTATTCCATCGTCACCAACACCG
GAATTCTTGTCGAAACCCGTTCCTTCCCCACCACGTCAGCAGGAATCAAACGAGCCCTCACCTGGGCCGGCAGGCGCACCAGCGGTGACCTCGACACCCT
CTGGGTCGTTGAAGGTGCGGCCTCGTACGGTGCGGTGCTGACCGGACACATCGCCGCAGCCGGGTACCCGGTAGTCGAAGCCGGGCGTATGGATGCCAAA
GCCCGCCACGGTGTCGGTAAGAGCGACGAGCTTGATTCCCGCCGGATCGCGGCATCTGTATTGCCTCTCGACGCCGATCAACTGCGGTGGCCGCGTCACG
GTGAAGGCGTCCGGCAGGCGCTGCGTGTCCTGCTGGCAGCCCGGGACGCGATGAGTACGGAACGGACTCGTGCGATCAACTCTCTGACCGCGCTGGTGCG
CACCATCGATCTTGGCATCGATGCCCGCAAGTCGTTGACCAGTGACCAGGTCGACGAGATCGCGAAATGGCGGACCCGCAACGAAGACGTCGACTTGTCC
ACCGCCCGGGAAGAAGCGATCCGTCTGGCCAAACGCGTCCTCGCTTTGAACGATGATCTGCAGACCAACCATGACAGGCTCACCGAGCTTGTTGAAGCTA
GTCCGGCCGCACCCTTGCTGGATGAGCCCGGGATCGGCCCATTCAGCGCCGCTGTGTGCTTCACCGCGTGGTCCCACCCGGGGCGGGTGCGGAACGAGGC
CGCGTTCGCAGCTCTGGCGGGAGTGAACCCGATACCTGCGTCGTCGGGCAACACGCGCCGGCACCGGTTGAACCGGGGCGGGGATCGGCAGTTGAACCGG
GCCCTACACACGGTGATCATGAACCGGATGGTCCATGACGAACGGACCAGGAACTACGTGGCCCGCCACTACGGTGAAGAACCGACGAAGAAATCCAAGA
GGGAGATCAAGCGCAACCTCAAACGGTATCTAGCGCGCCGGGTCTACAAGATCCTCAACGCGCTAGATACCGTTCCTCAACCCGCTTGACAAGACATAGA
AGGATCG
GGTGTCTTGCCCTCGATTTGTCCGATCACATGGATGGTGCGGCCGGCACCAGCTCGGCCCACATCGGTAACTTGATCAGAAGGCTGTCCACCCCCGAAAA
TCCGGGGGTGTGACTCATCACAGTGTTGTTCCGAAGTGATCTCTAACCCGGACCGGTACCGGCCGCAAGCGGCCACGCAACCCATCGGTCAAACAGGGAG
CTTCGAACCGCTATGTCTATTGTCGCGCACTTATACAGTTTCTTCATCGGTGTTGATACACACGCCAGAAACCACGTGTATTCCATCGTCACCAACACCG
GAATTCTTGTCGAAACCCGTTCCTTCCCCACCACGTCAGCAGGAATCAAACGAGCCCTCACCTGGGCCGGCAGGCGCACCAGCGGTGACCTCGACACCCT
CTGGGTCGTTGAAGGTGCGGCCTCGTACGGTGCGGTGCTGACCGGACACATCGCCGCAGCCGGGTACCCGGTAGTCGAAGCCGGGCGTATGGATGCCAAA
GCCCGCCACGGTGTCGGTAAGAGCGACGAGCTTGATTCCCGCCGGATCGCGGCATCTGTATTGCCTCTCGACGCCGATCAACTGCGGTGGCCGCGTCACG
GTGAAGGCGTCCGGCAGGCGCTGCGTGTCCTGCTGGCAGCCCGGGACGCGATGAGTACGGAACGGACTCGTGCGATCAACTCTCTGACCGCGCTGGTGCG
CACCATCGATCTTGGCATCGATGCCCGCAAGTCGTTGACCAGTGACCAGGTCGACGAGATCGCGAAATGGCGGACCCGCAACGAAGACGTCGACTTGTCC
ACCGCCCGGGAAGAAGCGATCCGTCTGGCCAAACGCGTCCTCGCTTTGAACGATGATCTGCAGACCAACCATGACAGGCTCACCGAGCTTGTTGAAGCTA
GTCCGGCCGCACCCTTGCTGGATGAGCCCGGGATCGGCCCATTCAGCGCCGCTGTGTGCTTCACCGCGTGGTCCCACCCGGGGCGGGTGCGGAACGAGGC
CGCGTTCGCAGCTCTGGCGGGAGTGAACCCGATACCTGCGTCGTCGGGCAACACGCGCCGGCACCGGTTGAACCGGGGCGGGGATCGGCAGTTGAACCGG
GCCCTACACACGGTGATCATGAACCGGATGGTCCATGACGAACGGACCAGGAACTACGTGGCCCGCCACTACGGTGAAGAACCGACGAAGAAATCCAAGA
GGGAGATCAAGCGCAACCTCAAACGGTATCTAGCGCGCCGGGTCTACAAGATCCTCAACGCGCTAGATACCGTTCCTCAACCCGCTTGACAAGACATAGA
AGGATCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1077 bp | 358 aa | 313 | 1389 | + | No |
Chemistry : DEDD
ORF sequence :
MSIVAHLYSFFIGVDTHARNHVYSIVTNTGILVETRSFPTTSAGIKRALTWAGRRTSGDLDTLWVVEGAASYGAVLTGHIAAAGYPVVEAGRMDAKARHG
VGKSDELDSRRIAASVLPLDADQLRWPRHGEGVRQALRVLLAARDAMSTERTRAINSLTALVRTIDLGIDARKSLTSDQVDEIAKWRTRNEDVDLSTARE
EAIRLAKRVLALNDDLQTNHDRLTELVEASPAAPLLDEPGIGPFSAAVCFTAWSHPGRVRNEAAFAALAGVNPIPASSGNTRRHRLNRGGDRQLNRALHT
VIMNRMVHDERTRNYVARHYGEEPTKKSKREIKRNLKRYLARRVYKILNALDTVPQPA
VGKSDELDSRRIAASVLPLDADQLRWPRHGEGVRQALRVLLAARDAMSTERTRAINSLTALVRTIDLGIDARKSLTSDQVDEIAKWRTRNEDVDLSTARE
EAIRLAKRVLALNDDLQTNHDRLTELVEASPAAPLLDEPGIGPFSAAVCFTAWSHPGRVRNEAAFAALAGVNPIPASSGNTRRHRLNRGGDRQLNRALHT
VIMNRMVHDERTRNYVARHYGEEPTKKSKREIKRNLKRYLARRVYKILNALDTVPQPA
Blast result :
Comments
ISBli31 is 76% aa similar to ISAar29.
There is an empty site in Brevibacterium siliguriense strain DSM 23676 (LT629766).
Inserted in a higthly repeted sequence.
There is an empty site in Brevibacterium siliguriense strain DSM 23676 (LT629766).
Inserted in a higthly repeted sequence.
References
1] Sebastien Levesque (2017) Direct submission.
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.