ISBli30

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014869 ND Brevibacterium linens
Brevibacterium linens
Brevibacterium linens BS258
Brevibacterium epidermidis BS258
DNA section
IS Length : 1435 bp

Ends


IR Length : 27/31

IRL : GGCTCTTCGCAATTGAGAGTGTAGATCGGTGATTCCAGGACACGGCGAGT
IRR : GGCTCATCGTAATTGAGAGTGTAGAACCGGTCTGAAGCCACCGGACTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
ACGACCTTTCCGAGTTTCGCGTTGATCGAGGG8

DNA sequence

GGCTCTTCGCAATTGAGAGTGTAGATCGGTGATTCCAGGACACGGCGAGTCGCTGCGCGGATAGACGTCGAGGTCTTCCGATGATGGAAGTTCTCACACA
ATCCATCCGAAAGACCTCGACGTGGCCAAGCCTACTTTCTCGACCCCTGACCTCACGACATTCTGCCGACTCGACACCCTCGACCTCACTTGCATTGGCC
AGCACATCACCGGGCACAAGGCGATTCTGGAATGCCGGCCCAACACTGCTGATGACTGGTGCCGTCGGTGCGGTGGCCACGGGATCGTTCGCGATACCGT
CGTCCGCCGTCTGGCCCACGAACCTTTCGGCCACCGACCAACCACGCTTCATCTTCGCCTCCGCCGTTACAAATGCGTCGAGTGTGGCCGCGTCTGGCGT
CAAGACGCCACAGCCGCGGCACCACCACGAGCGAAGATCTCGCGAACCGGCCTCGACTGGGCGTTGCGTGCCCTCGTCATCGATCACGACACCGTGTCCG
TCATCGCTGCGAAACTCGCAGTGTCCTGGCACACCGCGAATTCCGCCGTCCTCGCTGAAGGTCAGCGGTTGTTGATCAACGACCCGACTCGTTTCGACGG
GGTCAGCGTCATTGGTGTCGACGAGCATGTATGGCGGCATACCCGGCGTGGTGACAAGTACGTCACCGTCATCATCGACCTCACCCCGATCAGCGAGGGA
ACAGGCTCGGCACGTCTGCTCGACATGGTGGCTGGCCGTTCGAAGCAGGTGTTCAAACAATGGTTGAAAGACCGACCGAAAAACTGGCGTGAGGGCATCG
ACGTCGTCGCGATGGACGGATTCTCCGGCTTCAAAACAGCCTCATCTGAGGAACTGCCCGACGCTGTCGAAGTCATGGACCCCTTCCACGTCGTCAAACT
CGCCGGTGATGCCCTCGACGAGGTACGTCGCCGAGTTCAGCAGGAGACAACCGGCCATCGCGGACGAGCAAAGGACCCGTTGTACCGGGCAAGAAGAACT
CTGCACACGGGCAGCAGCTTACTCACGACCAAGCAGCAGGAAAGAATCGCGAACCTCTTCGCTGATGCGAACTTCACCGAAGTCGAAGTCACTTGGGCCG
TCTACCAAGACATTGTCAGCGCCTACCGAACCGCGGACCGCAAAGAGGGCAAGAGACTCTTGCAAACGGTCATCGACGCCCTGACAACGAATCTGCCATC
CGAACTTGTCGAGCTCAAACGGTTAGGACGAACGTTGAAGCGTCGAGCTGCTGATGTGCTCGCGTTCTTCACCCGACCGGGAACGTCGAACGGTCCCACT
GAAGCGATCAACGGCAGACTCGAGCATCTACGCGGGTCCGCGCTGGGATTCCGCAACCTCACGCATTACATCGCGAGGTGTCTGCTCGAGTCCGGTGGCT
TCAGACCGGTTCTACACTCTCAATTACGATGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1311 bp436 aa1221432+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MAKPTFSTPDLTTFCRLDTLDLTCIGQHITGHKAILECRPNTADDWCRRCGGHGIVRDTVVRRLAHEPFGHRPTTLHLRLRRYKCVECGRVWRQDATAAA
PPRAKISRTGLDWALRALVIDHDTVSVIAAKLAVSWHTANSAVLAEGQRLLINDPTRFDGVSVIGVDEHVWRHTRRGDKYVTVIIDLTPISEGTGSARLL
DMVAGRSKQVFKQWLKDRPKNWREGIDVVAMDGFSGFKTASSEELPDAVEVMDPFHVVKLAGDALDEVRRRVQQETTGHRGRAKDPLYRARRTLHTGSSL
LTTKQQERIANLFADANFTEVEVTWAVYQDIVSAYRTADRKEGKRLLQTVIDALTTNLPSELVELKRLGRTLKRRAADVLAFFTRPGTSNGPTEAINGRL
EHLRGSALGFRNLTHYIARCLLESGGFRPVLHSQLR

 

Blast result :
Comments
ISBli30 is 93% aa similar to ISBli1.
References
1] Sebastien Levesque (2017) Direct submission.
2] Zhu,Y. and Sun,C. (2016) Direct GenBank submission.