ISSpl1
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP025536 | ND | Streptococcus pluranimilium | Streptococcus pluranimilium TH11417 |
DNA section
IS Length : 1430 bp
Ends
IR Length : 20/25
IRL : TGAACTGCACCCCAAAAGTTAGACACAAAATCTAACGATTGGGGTGCTTT
IRR : TGTACTGACCCCAAAAAGTTGGACAACTCATTATTGAAAGGATTTAGTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGGTTCAAA | TTC | ATGAACCAGT | 3 |
GTGTTAATGC | ATT | ATTGACACAA | 3 |
CTTGCCGCTT | GGG | CAAGTCTTTT | 3 |
DNA sequence
TGAACTGCACCCCAAAAGTTAGACACAAAATCTAACGATTGGGGTGCTTTTCCTATGAAGTTAAGTTATAAAGATAAACTAGAAATCTATGAGCTGAGAA
AGAACGGAATGTCGTGGCCTTGGATTAGCCAACAATATGATGTTAATATTTCTAATCTCACATACATGATGAACCTCATGGATCGGTATGGCGTAGAAGT
CGTTGAAAAAGGTAACAATCGGTATTATTCTCCCGAATTAAAGGAGGAAATAATAGATAAAGTCTTGATTCATGGTTGTTCTCAACTCTCAGTTTCTCTT
GATTATGCCTTGCCAAATCGAGGAATACTTCCAAATTGGATAGCGCAATACAAGAAAAACGGTTATACTATTCTTGAAAAACCAAGAGGGAGACCGAGCA
AGATGGGACGTAAACGCAATAAAACCTGGGATGAAATGACGGAATTAGAACGCCTTCAAGAGGAAAATGAACGTCTCCGAACTGAGGTGGCCTTTCTAAA
AAAGTTGAGAGAACTTCGTTTAAGGGACGAAGCTCTAGCGCGCGAACGGCAGAAACAATTAGAGACATGGTCCAAGAAGGATTCCGACTAGACCTCCTAC
TTGCGACAGCTAAAATGCCTCGCTCCACCTATTATTATCAAGTCAAGCAACTGGATAAACTCGACAAGAACAAAGCAATTAAGACTGAAATTCAAGCCAT
TTATGATGAACATAAAGGTAATTACGGCTATCGTCGAATTTATTTAGAACTCAGAAATCGTGGATTTGTGGTCAATCATAAGAAAGTTCAACGTCTCATG
ACAGTCATGGGCCTAGCAGCCCGCATTCGTCGTAAGCGCAAGTATTCTTCTTACAAAGGTGGAGTTGGTAAGAAGGCTGATAATCTAATTAAACGTCAAT
TCGAGGGCTCTAAGCCTTGCGAGAAGTGTTATACCGATGTGACGGAGTTTGCCTTACCTGAAGGAAAACTCTACTTATCACCTGTTCTTGACGGCTATAA
CAGCGAGATTATTGATTTCACTCTGTCTCGATCTCCTAACTTGAAACAGGTTCAGACCATGCTGGATAAGGCATTTCCAGCAGATTCATACAGTGGAACT
ATTCTTCATAGTGACCAGGGTTGGCAATACCAACACCAGTCCTACCATGATTTTTTAGAGTCTAAAGGCATTCTGCCATCTATGTCCCGCAAGGGAAATA
GTCCAGATAATGGCATGATGGAATCTTTCTTTGGCATTCTCAAATCTGAAATGTTTTATGGACTCGAGACATCTTATCAATCCCTTGACGAGCTTGAAGA
AGCTATTATAGACTATATTTATTACTACAACAACAAACGCATTAAAGTAAAACTAAAAGGACTTAGTCCTGTCCAATACAGAACTAAATCCTTTCAATAA
TGAGTTGTCCAACTTTTTGGGGTCAGTACA
AGAACGGAATGTCGTGGCCTTGGATTAGCCAACAATATGATGTTAATATTTCTAATCTCACATACATGATGAACCTCATGGATCGGTATGGCGTAGAAGT
CGTTGAAAAAGGTAACAATCGGTATTATTCTCCCGAATTAAAGGAGGAAATAATAGATAAAGTCTTGATTCATGGTTGTTCTCAACTCTCAGTTTCTCTT
GATTATGCCTTGCCAAATCGAGGAATACTTCCAAATTGGATAGCGCAATACAAGAAAAACGGTTATACTATTCTTGAAAAACCAAGAGGGAGACCGAGCA
AGATGGGACGTAAACGCAATAAAACCTGGGATGAAATGACGGAATTAGAACGCCTTCAAGAGGAAAATGAACGTCTCCGAACTGAGGTGGCCTTTCTAAA
AAAGTTGAGAGAACTTCGTTTAAGGGACGAAGCTCTAGCGCGCGAACGGCAGAAACAATTAGAGACATGGTCCAAGAAGGATTCCGACTAGACCTCCTAC
TTGCGACAGCTAAAATGCCTCGCTCCACCTATTATTATCAAGTCAAGCAACTGGATAAACTCGACAAGAACAAAGCAATTAAGACTGAAATTCAAGCCAT
TTATGATGAACATAAAGGTAATTACGGCTATCGTCGAATTTATTTAGAACTCAGAAATCGTGGATTTGTGGTCAATCATAAGAAAGTTCAACGTCTCATG
ACAGTCATGGGCCTAGCAGCCCGCATTCGTCGTAAGCGCAAGTATTCTTCTTACAAAGGTGGAGTTGGTAAGAAGGCTGATAATCTAATTAAACGTCAAT
TCGAGGGCTCTAAGCCTTGCGAGAAGTGTTATACCGATGTGACGGAGTTTGCCTTACCTGAAGGAAAACTCTACTTATCACCTGTTCTTGACGGCTATAA
CAGCGAGATTATTGATTTCACTCTGTCTCGATCTCCTAACTTGAAACAGGTTCAGACCATGCTGGATAAGGCATTTCCAGCAGATTCATACAGTGGAACT
ATTCTTCATAGTGACCAGGGTTGGCAATACCAACACCAGTCCTACCATGATTTTTTAGAGTCTAAAGGCATTCTGCCATCTATGTCCCGCAAGGGAAATA
GTCCAGATAATGGCATGATGGAATCTTTCTTTGGCATTCTCAAATCTGAAATGTTTTATGGACTCGAGACATCTTATCAATCCCTTGACGAGCTTGAAGA
AGCTATTATAGACTATATTTATTACTACAACAACAAACGCATTAAAGTAAAACTAAAAGGACTTAGTCCTGTCCAATACAGAACTAAATCCTTTCAATAA
TGAGTTGTCCAACTTTTTGGGGTCAGTACA
Recoding section
- Recoding by frameshift
- Frame -1
- Type translational
- Experimentally demonstrated No
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
537 bp | 178 aa | 55 | 591 | + | No |
Description : First part of the transposase
ORF sequence :
MKLSYKDKLEIYELRKNGMSWPWISQQYDVNISNLTYMMNLMDRYGVEVVEKGNNRYYSPELKEEIIDKVLIHGCSQLSVSLDYALPNRGILPNWIAQYK
KNGYTILEKPRGRPSKMGRKRNKTWDEMTELERLQEENERLRTEVAFLKKLRELRLRDEALARERQKQLETWSKKDSD
KNGYTILEKPRGRPSKMGRKRNKTWDEMTELERLQEENERLRTEVAFLKKLRELRLRDEALARERQKQLETWSKKDSD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
915 bp | 304 aa | 486 | 1400 | + | No |
Description : Second part of the transposase
ORF sequence :
GGLSKKVERTSFKGRSSSARTAETIRDMVQEGFRLDLLLATAKMPRSTYYYQVKQLDKLDKNKAIKTEIQAIYDEHKGNYGYRRIYLELRNRGFVVNHKK
VQRLMTVMGLAARIRRKRKYSSYKGGVGKKADNLIKRQFEGSKPCEKCYTDVTEFALPEGKLYLSPVLDGYNSEIIDFTLSRSPNLKQVQTMLDKAFPAD
SYSGTILHSDQGWQYQHQSYHDFLESKGILPSMSRKGNSPDNGMMESFFGILKSEMFYGLETSYQSLDELEEAIIDYIYYYNNKRIKVKLKGLSPVQYRT
KSFQ
VQRLMTVMGLAARIRRKRKYSSYKGGVGKKADNLIKRQFEGSKPCEKCYTDVTEFALPEGKLYLSPVLDGYNSEIIDFTLSRSPNLKQVQTMLDKAFPAD
SYSGTILHSDQGWQYQHQSYHDFLESKGILPSMSRKGNSPDNGMMESFFGILKSEMFYGLETSYQSLDELEEAIIDYIYYYNNKRIKVKLKGLSPVQYRT
KSFQ
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1346 bp | 448 aa | 55 | 1400 | + | Yes |
Chemistry : DDE
ORF sequence :
MKLSYKDKLEIYELRKNGMSWPWISQQYDVNISNLTYMMNLMDRYGVEVVEKGNNRYYSPELKEEIIDKVLIHGCSQLSVSLDYALPNRGILPNWIAQYK
KNGYTILEKPRGRPSKMGRKRNKTWDEMTELERLQEENERLRTEVAFLKKVERTSFKGRSSSARTAETIRDMVQEGFRLDLLLATAKMPRSTYYYQVKQL
DKLDKNKAIKTEIQAIYDEHKGNYGYRRIYLELRNRGFVVNHKKVQRLMTVMGLAARIRRKRKYSSYKGGVGKKADNLIKRQFEGSKPCEKCYTDVTEFA
LPEGKLYLSPVLDGYNSEIIDFTLSRSPNLKQVQTMLDKAFPADSYSGTILHSDQGWQYQHQSYHDFLESKGILPSMSRKGNSPDNGMMESFFGILKSEM
FYGLETSYQSLDELEEAIIDYIYYYNNKRIKVKLKGLSPVQYRTKSFQ
KNGYTILEKPRGRPSKMGRKRNKTWDEMTELERLQEENERLRTEVAFLKKVERTSFKGRSSSARTAETIRDMVQEGFRLDLLLATAKMPRSTYYYQVKQL
DKLDKNKAIKTEIQAIYDEHKGNYGYRRIYLELRNRGFVVNHKKVQRLMTVMGLAARIRRKRKYSSYKGGVGKKADNLIKRQFEGSKPCEKCYTDVTEFA
LPEGKLYLSPVLDGYNSEIIDFTLSRSPNLKQVQTMLDKAFPADSYSGTILHSDQGWQYQHQSYHDFLESKGILPSMSRKGNSPDNGMMESFFGILKSEM
FYGLETSYQSLDELEEAIIDYIYYYNNKRIKVKLKGLSPVQYRTKSFQ
Blast result :
Comments
ISSpl1 is 88% aa similar to ISStin7.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISSpl1 was identified in Streptococcus pluranimilium TH11417 strain from cattle.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISSpl1 was identified in Streptococcus pluranimilium TH11417 strain from cattle.
References
1] Yushan Pan (2017) Direct submission to ISfinder